Illumina Experiment Manager v1.9 Release Notes

Illumina Experiment Manager v1.9 Release Notes
Illumina Experiment Manager Software Release Notes
Part Number: XXX
Revision: A
Release Date: March 6, 2015
Page 1 of 3
Illumina Experiment Manager (IEM)
Software
Release Notes
For MiSeq, HiSeq, NextSeq, and NeoPrep Systems
March 11, 2015
Revision History
Revision
Date
Description of Change
A
March 10, 2015
Initial Version
Illumina Experiment Manager Software Release Notes
Part Number: XXX
Revision: A
Release Date: March 6, 2015
Page 2 of 3
Introduction
These Release Notes detail the key changes to software components for the Illumina
Experiment Manager (IEM) between the specific versions listed in the table.
Software Application
Prior Version
New Version
Illumina Experiment Manager
1.8
1.9
This update is required to run samples prepared with the TruSight HLA DNA kit, or for
use on the HiSeq 3000/HiSeq 4000, and NeoPrep instruments.
If you are upgrading from a version before v1.8, review the v1.8 release notes for a list
of features and bug fixes introduced in that version.
New TruSight HLA and NeoPrep quick reference cards were created to include new
features in this release. The Illumina Experiment Manager User Guide and following
quick reference cards were also revised to include the new features:






I.
IEM Nextera
IEM TruSeq Custom Amplicon or TruSeq Amplicon Cancer Panel
IEM TruSeq DNA, RNA, or ChIP
IEM TruSeq Small RNA
IEM TruSeq Synthetic Long-Read DNA
IEM TruSight One, Enrichment, or Rapid Capture
Illumina Experiment Manager 1.9
NEW FEATURES:

IEM v1.9 can be used to create and edit sample sheets for use with the HiSeq 3000
and 4000 sequencing systems. For more information, see the new HiSeq 3000 and
HiSeq 4000 user guides, the revised Illumina Experiment Manager User Guide, and
the following revised quick reference cards:
o
o
o
o
o
o
IEM
IEM
IEM
IEM
IEM
IEM
Nextera
TruSeq Custom Amplicon or TruSeq Amplicon Cancer Panel
TruSeq DNA, RNA, or ChIP
TruSeq Small RNA
TruSeq Synthetic Long-Read DNA
TruSight One, Enrichment, or Rapid Capture

IEM v1.9 can be used to create and edit sample sheets for use with the NeoPrep
Library Prep System. For more information, see the revised Illumina Experiment
Manager User Guide and IEM NeoPrep quick reference Card.

IEM v1.9 can be used to create and edit TruSight HLA sample sheets and plates for
use with MiSeq sequencing systems. For more information, see the revised Illumina
Experiment Manager User Guide and IEM TruSight HLA quick reference card.

Nextera XT v2 sample sheets can now be created for 384 samples in a single sheet.
DEFECT REPAIRS:

IEM v1.9 no longer contains unnecessary options for the NextSeq sequencer. This
includes:
o Custom primer for Read 1
Illumina Experiment Manager Software Release Notes
Part Number: XXX
Revision: A
Release Date: March 6, 2015
Page 3 of 3
o
o
Custom primer for Read 2
Custom primer for index
KNOWN ISSUES:

A series of checkboxes for the use of customer primers is provided under the HiSeq
3000/4000 Sample Sheet – Workflow Parameters menu. However, the use of custom
primers has not been tested and is currently not supported on the HiSeq 3000/4000

To install IEM v1.9, previous versions of IEM must first be uninstalled. Before
installing, use Start Menu  Control Panel  Programs and Features to uninstall any
prior version of IEM. Note: if IEM v1.6 or higher is already installed, the user
receives a warning before installation of IEM v1.9 can proceed. Earlier versions of
IEM (1.5 or earlier) do not trigger this warning.
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