Illumina 5521 Hybridization Oven System Guide
Below you will find brief information for Hybridization Oven 5521. The Illumina Hybridization Oven Model 5521 is a high-capacity hybridization (hyb) oven that is customized for Illumina assays. Forced air circulation coupled with microprocessor-controlled temperature control combine to provide unsurpassed temperature performance and the most consistent conditions from procedure to procedure. It has the following features: Platform rocker, Universal applicability to any Illumina BeadChip format, Platform space for up to six Hyb Chambers, each holding up to four BeadChips, Ability to be used in either genotyping or gene expression assays.
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This document and its contents are proprietary to Illumina, Inc. and its affiliates ("Illumina"), and are intended solely for the contractual use of its customer in connection with the use of the product(s) described herein and for no other purpose. This document and its contents shall not be used or distributed for any other purpose and/or otherwise communicated, disclosed, or reproduced in any way whatsoever without the prior written consent of Illumina. Illumina does not convey any license under its patent, trademark, copyright, or common-law rights nor similar rights of any third parties by this document.
The instructions in this document must be strictly and explicitly followed by qualified and properly trained personnel in order to ensure the proper and safe use of the product(s) described herein. All of the contents of this document must be fully read and understood prior to using such product(s).
FAILURE TO COMPLETELY READ AND EXPLICITLY FOLLOW ALL OF THE
INSTRUCTIONS CONTAINED HEREIN MAY RESULT IN DAMAGE TO THE PRODUCT(S),
INJURY TO PERSONS, INCLUDING TO USERS OR OTHERS, AND DAMAGE TO OTHER
PROPERTY.
ILLUMINA DOES NOT ASSUME ANY LIABILITY ARISING OUT OF THE IMPROPER USE OF
THE PRODUCT(S) DESCRIBED HEREIN (INCLUDING PARTS THEREOF OR SOFTWARE) OR
ANY USE OF SUCH PRODUCT(S) OUTSIDE THE SCOPE OF THE EXPRESS WRITTEN
LICENSES OR PERMISSIONS GRANTED BY ILLUMINA IN CONNECTION WITH
CUSTOMER'S ACQUISITION OF SUCH PRODUCT(S).
© 2004-2012 Illumina, Inc. All rights reserved.
Illumina, illuminaDx, BaseSpace, BeadArray, BeadXpress, cBot, CSPro, DASL, DesignStudio,
Eco, GAIIx, Genetic Energy, Genome Analyzer, GenomeStudio, GoldenGate, HiScan, HiSeq,
Infinium, iSelect, MiSeq, Nextera, Sentrix, SeqMonitor, Solexa, TruSeq, VeraCode, the pumpkin orange color, and the Genetic Energy streaming bases are registered trademarks or trademarks of Illumina, Inc. All other brands and names contained herein are the property of their respective owners.
The Illumina Hybridization Oven was manufactured for Illumina by:
Boekel Scientific
855 Pennsylvania Road
Feasterville, PA 19053 USA
Tel: (800) 336-6929 or (215) 396-8200
Fax: (215) 396-8264
Email: [email protected]
Hybridization Oven System Guide ii
Revision History
Part #, Revision Letter
Part # 11317134 Rev. B
Part# 11317134 Rev. A
Date
December 2012
June 2008
Hybridization Oven System Guide iv
Table of Contents
Chapter 1 Overview . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1
Symbols on the Hyb Oven . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Temperature Cautions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Technical Specifications . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Environmental Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Chapter 2 Unpacking and Setup . . . . . . . . . . . . . . . . . . . . . . . . .9
Setting up the Platform Rocker . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Installing the Platform Rocker . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
Removing the Platform Rocker . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
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Chapter 3 Operations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Changing the Set Temperature . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .20
Using the High Temperature Alarm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .21
Turning the Timer Off During Operation . . . . . . . . . . . . . . . . . . . . . . . .23
Cancelling the Timer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .23
Chapter 4 Maintenance . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 25
Chapter 5 Troubleshooting . . . . . . . . . . . . . . . . . . . . . . . . . . . . 31
Part # 11317134 Rev. B
Overview
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1
Introduction
The Illumina Hybridization Oven Model 5521 is a high-capacity hybridization (hyb) oven that is customized for Illumina assays. Forced air circulation coupled with microprocessor-controlled temperature control combine to provide unsurpassed temperature performance and the most consistent conditions from procedure to procedure. It has the following features:
Platform rocker
Universal applicability to any Illumina BeadChip format
Platform space for up to six Hyb Chambers, each holding up to four BeadChips
Ability to be used in either genotyping or gene expression assays
Only assays that use the same oven temperature can be run concurrently. Please note that the convection fan operates continuously whenever the unit is turned on.
Figure 1
Illumina Hybridization Oven Model 5521
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Safety Precautions
This section describes the safety precautions that must be followed when installing, operating, or maintaining the Illumina Hybridization Oven.
Symbols on the Hyb Oven
Read this user guide fully before using the Hybridization Oven. Pay particular attention to sections containing this symbol.
Surfaces can become hot during use.
General Cautions
Power Cautions
Only use the Hybridization Oven as instructed in this guide. Any unauthorized use may impede the protections designed into the unit for your safety.
To avoid trapping or tangling your body or clothing in the hot unit, always wait until the motor has fully stopped before adding or removing anything from the Hybridization Oven.
If the Hybridization Oven is transported or stored in humid conditions, dry out the unit thoroughly before connecting it to the power supply.
When damp the safety protections designed into the unit may be impaired, so if the unit is not dry when you plug it in, you may receive an electric shock.
Connect the Hybridization Oven only to a power supply with a voltage that corresponds to the voltage indicated on the serial number label.
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Connect the Hybridization Oven only to a power supply that provides a safety ground terminal.
Ensure that the power switch is easily accessible at all times, especially during use.
Do not position the unit in a way that obstructs the power cord and power supply, or makes it difficult to disconnect the unit.
Before moving the Hybridization Oven for any reason, disconnect the power cord from the power supply. Do not remove the plug from the rear of the unit. The power cord supplied with the unit is the only means of disconnecting the unit.
Only use this product with a UL/CSA Certified power supply cord set rated for a minimum temperature of 90ºC.
Temperature Cautions
To check the temperature, refer to the temperature display or use a thermometer. Never touch the unit to check the temperature, as this may cause personal injury.
Do not touch surfaces that become hot during high temperature operation, as this may cause personal injury.
To reduce the risk of eye injury during high temperature operation, wear safety goggles or spectacles.
Ensure that the operating temperature is lower than the maximum operating temperature of your sample material.
Never block or restrict the ventilation slots.
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Cleaning Cautions
If liquid is spilled inside the unit, immediately disconnect the unit from the power supply and use clean up procedures appropriate for the substance spilled.
Carry out appropriate decontamination procedures if hazardous material is spilled on or inside the unit.
Use the cleaning and decontamination methods recommended by the manufacturer.
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Product Information
This section lists the equipment and accessories for the Illumina Hybridization Oven.
Equipment
Table 1
Illumina-Supplied Equipment
Item
Illumina Hybridization Oven with Rocker,
115 VAC
Illumina Hybridization Oven with Rocker,
230 VAC
Boekel
Scientific Part #
Illumina Part
#
230402-ILL 11277582
230402-2ILL 11277591
Accessories
Table 2
Boekel-Supplied Accessories
Item
Platform Rocker
Boekel Scientific Part #
47746-108
Technical Specifications
This table lists the technical specifications for the Illumina Hybridization Oven.
Table 3
Illumina Hybridization Oven Technical Specifications
Specification
Temperature Range
Illumina Hybridization Oven Rating
(Ambient + 10ºC) to 100ºC
Temperature Setting Range
Temperature Stability
0ºC to 100ºC
± 0.2ºC
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Table 3
Illumina Hybridization Oven Technical Specifications (Continued)
Specification Illumina Hybridization Oven Rating
Overall Temperature Accuracy ± 0.3ºC at 65ºC
Temperature Display Resolution 0.1ºC
Supply Ratings 115V Hyb Oven: ± 10%, 2.8A, 60 Hz
230V Hyb Oven: ± 10%, 1.6A, 50/60 Hz
Power Ratings
Heating Rate
115V Hyb Oven: 360W
230V Hyb Oven: 350W
Ambient to 65ºC within 30 minutes
Rotation Speed
Installation Category
5–60 rpm
Installation Category II (transient voltages)
Environmental Requirements
The Illumina Hybridization Oven will meet its performance figures when operated within the environmental constraints described in this table.
Table 4
Illumina Hybridization Oven Environmental Requirements
Requirement
Location
Acceptable Value or Range
Indoor use only
Ambient Temperature
Maximum Relative Humidity
Altitude
Pollution
0ºC to 35ºC
80% non-condensing
Up to 2000 meters (6500 feet)
Pollution degree 2 in accordance with IEC 664
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Warranty
When the Illumina Hybridization Oven is used in laboratory conditions and according to these operating instructions, Boekel Scientific warrants this product to be free of defective material and workmanship for a period of two years from the date of manufacture. The liability of Boekel Scientific for any defective equipment during the warranty period shall be limited to the repair of such equipment or replacement thereof without charge for parts or labor.
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Part # 11317134 Rev. B
Unpacking and Setup
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Unpacking
Perform the following steps to unpack the Illumina Hybridization Oven:
1 Position the box on the floor so that the opening is on the side.
2 Slide the Hybridization Oven out of the box.
3 Carefully remove all packaging materials from around the Hybridization Oven.
4 Retain all of the packaging materials so that you can safely repackage the unit for shipping or storage if necessary.
5 Verify that you have all of the following components:
• Illumina Hybridization Oven
• Power cord
• Operating instructions
• Hex keys (2)
• Stainless steel drip tray
• Platform rocker
6 If there is any shipping damage, report it to the carrier immediately. The carrier covers shipping damage, and repairs or replacements for shipping damages must be coordinated through the carrier.
7 Fill out and return the warranty registration card.
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Part # 11317134 Rev. B
Setting up the Platform Rocker
To set up the Illumina Hybridization Oven with the platform rocker, perform the
Figure 2
Illumina Hybridization Oven with Platform Rocker
Platform
Rocker
Head Screw
Hyb Oven
Drive Shaft
Platform
Rocker
Shaft Collar
Drip Tray
Platform
1 Place the hyb oven on the post-PCR lab benchtop, preferably away from drafts.
2 Open the hyb oven door and adjust the hyb oven drive shaft so that the flat side is facing forward.
3 Position the socket head screw on the platform rocker shaft collar so that it faces forward.
4 Remove the drip tray from the hyb oven packaging.
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Installing the Platform Rocker
1 Remove the platform rocker from the hyb oven packaging.
2 Ensure that the platform rocker head screw is facing forward.
3 Place the platform rocker on the drip tray and slide the drip tray into the hyb oven as far left as possible.
4 Push the platform rocker all the way to the right and insert the hyb oven drive shaft into the platform rocker shaft collar.
5 Secure the platform rocker head screw to the drive shaft, using the large hex key provided, making sure that the screw meets the flat portion of the drive shaft at a
90º
angle.
6 Manually move the platform to ensure it moves without restrictions.
7
Proceed to Turning-on the Hyb Oven on page 14.
Removing the Platform Rocker
To remove the platform rocker from the hyb oven, follow these steps
To avoid trapping or tangling your body or clothing in the hot unit, always wait until the motor has fully stopped before adding or removing anything from the Hybridization Oven.
Disconnect the power cord from the socket. Do not remove the plug from the rear of the unit.
Use caution when removing the platform rocker since it may be very hot.
1
Remove any Hyb Chambers from the platform rocker (see Loading the Platform Rocker on page 18).
2 Position the platform rocker so the platform rocker head screw is facing forward and turn the power off.
3 Loosen the platform rocker head screw using the large hex key provided.
4 Slide the platform rocker to the left and off of the drive shaft.
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Part # 11317134 Rev. B
5 Slide the platform rocker and the drip tray out of the oven.
6 Place the drip tray back into the hyb oven.
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Turning-on the Hyb Oven
To turn-on the Illumina Hybridization Oven, perform the following steps:
1 Insert the socketed end of the power cord into the plug on the back of the hyb oven.
2 Connect the power cord plug to a power supply outlet on the wall.
Figure 3
Illumina Hybridization Oven Rear View
Power
Switch
Power
Cord Plug
3 Turn on the hyb oven power switch. The current temperature appears on the control
panel display. (See Controls & Displays.)
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Part # 11317134 Rev. B
Reversing the Door
The door hinge on the Illumina Hybridization Oven is reversible to allow the door to be opened from the left or right side. To change the door opening position, perform the following steps:
Figure 4
Reversing the Illumina Hybridization Oven Door
Screws
Caps
1 Remove the door by removing the three screws and three caps from the door hinge
2 Rotate the door 180º so the holes on the door hinge align with the holes on the opposite side of the hyb oven front.
3 Secure the door hinge using the three screws. Be sure that all screws are secured properly.
4 Place the caps in the unused holes that the door hinge previously was mounted to.
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Part # 11317134 Rev. B
Operations
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Loading the Platform Rocker
To load the Hyb Chambers onto the platform rocker, follow these steps (Figure 5). It is
important to evenly distributed the load for user safety and to ensure a long product life.
To avoid trapping or tangling your body or clothing in the hot unit, always wait until the motor has fully stopped before adding or removing anything from the Hybridization Oven.
1 Prepare the Hyb Chambers as directed in the lab protocols of the appropriate assay guide.
2 Place the Hyb Chambers on the platform, as shown.
Figure 5
Hyb Chamber on the Platform Rocker
18
NOTE
If you are not performing the optional rocking step in the assay, make sure the platform is flat when you load the Hyb Chambers.
3 Continue with the lab protocols of the appropriate assay guide.
Part # 11317134 Rev. B
Controls & Displays
This section describes how to operate the Illumina Hybridization Oven controls and the display function.
Figure 6
Illumina Hybridization Oven Controls and Display
Carousel
Indicator
Heat
Indicator
Function
Switch
Display
Set Switch
Motor Jog
Switch
Increment/
Decrement
Dial
Table 5
Controls
Item
Function Switch (F)
Carousel Indicator
Heat Indicator
Display
Set Switch (S)
Description
Press to enter the function select mode.
Indicates whether the rocker is turned on.
Represents when the hyb oven is turning the heat on.
This will turn on when you increase the set point to a higher temperature.
Shows the chamber temperature in °C during normal operations.
Press to enter the set mode to set temperatures or accept menu changes.
Motor Jog Switch Press to turn on the platform rocker inside the hyb oven.
Increment/Decrement Dial Rotate to increase or decrease the displayed value of the current mode.
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Changing the Set Temperature
To change the set temperature:
1 Press the F button once to change the display to TSET. The display alternates between
TSET and the set-temperature value.
2 Press the S button to enter the set-temperature mode.
3 Turn the Increment/Decrement dial to adjust the set temperature to the required temperature. The setting appears on the display.
4 When the desired set temperature appears, press the S button to accept the value. The value is then stored in memory.
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Part # 11317134 Rev. B
Using the High Temperature Alarm
The hyb oven is equipped with a high-temperature alarm. The default setting for the alarm is off. To turn on this alarm follow these steps:
1 Press the F button four times until ALAr appears on the display. The display alternates between ALAr and the high-temperature alarm value.
2 Press the S button to enter the alarm mode.
3 Turn the Increment/Decrement dial clockwise to turn on the high-temperature alarm.
4 Press the S button to enter alarm adjust mode.
The current high temperature alarm value appears. The default value is 5°C above the set temperature.
5 To adjust the value setting, turn the Increment/Decrement dial until the display indicates to the desired high temperature alarm value.
6 When the desired alarm value appears, press the S button. This turns the high temperature alarm on.
7 If a high-temperature alarm condition is encountered, the display indicates ALAr and a buzzer sounds. The buzzer continues until the unit is turned off or until the unit returns to a non-alarm condition.
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Setting the Motor Speed
To set the motor speed follow these steps:
1 Press the F button twice until SPd appears on the display. The display alternates between SPd and the current motor speed value.
2 Press the S button to enter the motor speed mode.
3 Turn the Increment/Decrement dial to set the required motor speed. The setting appears on the display. The display flashes when in the set motor speed mode.
4 When the desired motor speed appears, press the S button to accept the value. The value is then stored in memory and retained after the unit is switched off.
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Part # 11317134 Rev. B
Using the Timer
The timer can be programmed up to 99 hours and 59 minutes. The default setting for the timer is off.
To turn the timer on and set the timer duration, follow these steps:
1 Press the F button three times until CLOC appears on the display.
2 Press the S button to enter the clock mode.
3 Turn the Increment/Decrement dial clockwise to turn on the timer.
4 Press the S button to enter the clock adjust mode.
5 Turn the Increment/Decrement dial to set the required timer value. The display indicates the current clock setting (HH.MM).
6 When the desired time appears, press the S button to accept the value. This starts the timer and stores the value in memory. The display alternates between the chamber temperature and the time remaining.
At the end of the timer operation a buzzer sounds and the display displays End. The heater shuts off, but the platform rocker continues to operate for 2 hours.
Turning the Timer Off During Operation
To turn the timer off when unit is operating in a timed operation, follow these steps:
1 Press the F button three times until CLOC appears on the display.
2 Press the S button to enter the clock mode.
3 Turn the Increment/Decrement dial counterclockwise to turn off the timer.
4 Press the S button to accept the timer off setting.
Cancelling the Timer
To cancel the timer press the F and S buttons simultaneously. The unit will resume normal operations.
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Part # 11317134 Rev. B
Maintenance
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Introduction
The Illumina Hybridization Oven has been factory calibrated and routine maintenance is not required.
Calibration should be performed annually. The specifications for the oven are ±2° C at
40° C and 60° C.
Intermittent cleaning may be necessary if spills occur and fuse replacement may be required. Information on these maintenance operations are described in this section.
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Part # 11317134 Rev. B
Calibrating
The Illumina Hybridization Oven has been factory calibrated for optimum performance.
A pedigreed, individually serialized thermistor is used to monitor and control the temperature in each unit. These thermistors are
+/- 0.1°C absolute accurate, and +/- 0.01°C reproducible over time.
If there is a specific need to recalibrate or add a temperature offset, please contact Illumina
Technical Support.
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Cleaning
It may be necessary to occasionally clean or decontaminate the Illumina Hybridization
Oven. When doing so, take the following precautions:
Remove the power cord from the power cord plug on the back of the hyb oven prior to cleaning.
Do not submerge or immerse the hyb oven in water.
Do not clean the plastic on the front door with any abrasive cleaning agent. This will severely scratch this material.
If a spill occurs, use clean up procedures appropriate for the substance spilled.
The floor of the chamber is protected with a removable stainless steel drip tray. You can slide out the drip tray for cleaning without removing the platform rocker.
Use caution when removing the drip tray because it may be very hot.
Clean the outer casing of the hyb oven with a cloth dampened with water.
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Part # 11317134 Rev. B
Replacing a Fuse
It may be necessary to replace a fuse in the Illumina Hybridization Oven (see
Troubleshooting). To replace a fuse perform the following steps (Figure 7):
1 Disconnect the hyb oven from the power supply outlet.
2 Remove the power cord from the power cord plug on the back of the hyb oven.
3 Push down on the fuse drawer catch and pull it away from the hyb oven.
4 Pull open the fuse drawer.
Figure 7
Illumina Hybridization Oven Fuse Drawer
Fuse Voltage
Fuse
Power Switch Fuse
Drawer
Catch
Power Cord Plug
Fuse Drawer Closed Fuse Drawer Open
5 Check the fuses and replace them with the correct fuses. Be sure the proper voltage appears in the entry window when reinstalling.
The fuses should be 5mm x 20mm, rated 250V.
• 115V Hyb Oven: 4.0AF Slo-Blo
• 230V Hyb Oven: 4.0AF Slo-Blo
6 Push the fuse drawer back in and close the fuse drawer catch.
7 Reinsert the socketed end of the power cord into the plug on the back of the hyb oven.
8 Reconnect the power cord plug to a power supply outlet on the wall.
9 Turn on the hyb oven power switch.
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Part # 11317134 Rev. B
Troubleshooting
This chapter describes issues that may appear while operating the Illumina Hybridization
Oven and provides solutions.
Symptom Probable Cause Resolution
The unit does not operate.
The unit is not turned on.
Turn on the unit.
The unit is not plugged into the power supply.
The fuses are blown.
The power supply has failed.
Plug in the unit and turn it on.
Replace the fuses.
Check to see that other electrical appliances on the same circuit are working.
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Symptom Probable Cause Resolution
The chamber temperature does not rise when expected to.
The actual temperature is higher than the set temperature.
The temperature control circuit faulted.
Check the set temperature.
Have the unit checked by a person trained to maintain the hyb oven.
The temperature continues to rise when it is not expected to.
The timer cycle has ended. Turn the timer off.
The actual temperature is lower than the set temperature.
Check the set temperature.
The temperature control circuit failed.
Have the unit checked by a person trained to maintain the hyb oven.
There is no platform rocker movement, but the display is illuminated.
The motor jog switch is not on.
Turn motor jog switch on.
An obstruction is preventing the rocker movement.
Remove the obstruction.
The platform rocker is loose.
Tighten the set screws with the hex key.
The belt is slipping or off.
Have the unit checked by a person trained to maintain the hyb oven.
Part # 11317134 Rev. B
Technical Assistance
For technical assistance, contact Illumina Customer Support.
Table 6
Illumina General Contact Information
Illumina Website
http://www.illumina.com
Table 7
Illumina Customer Support Telephone Numbers
Region Contact Number Region
North America 1.800.809.4566
Austria 0800.296575
Italy
Netherlands
Belgium
Denmark
Finland
France
Germany
Ireland
0800.81102
80882346
0800.918363
0800.911850
0800.180.8994
1.800.812949
Norway
Spain
Sweden
Switzerland
United Kingdom
Other countries
Contact Number
800.874909
0800.0223859
800.16836
900.812168
020790181
0800.563118
0800.917.0041
+44.1799.534000
MSDSs
Material safety data sheets (MSDSs) are available on the Illumina website at http:// www.illumina.com/msds.
Product Documentation
Additional product documentation in PDF is available for download from the Illumina website. Go to http://www.illumina.com/support and select a product. A MyIllumina login is requred. To register for a MyIllumina account, please visit https:// my.illumina.com/Account/Register.
Hybridization Oven System Guide
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Illumina
San Diego, California, U.S.A.
+1.800.809.ILMN (4566)
+1.858.202.4566 (outside North America) [email protected]
www.illumina.com
Advertisement
Key features
- Forced air circulation
- Microprocessor-controlled temperature control
- Platform rocker
- Universal applicability to any Illumina BeadChip format
- Platform space for up to six Hyb Chambers
- Ability to be used in either genotyping or gene expression assays