Using whole genome comparison to detect sequence similarities between plants and microbes

Using whole genome comparison to detect sequence similarities between plants and microbes
Using whole genome comparison to detect
sequence similarities between plants and
microbes
By
BAREND JUAN VORSTER
submitted in partial fulfilment of the requirements for the degree
PHILOSOPHIAE DOCTOR
in the
Faculty of Natural and Agricultural Sciences
Department of Plant Science
University of Pretoria
Pretoria
SUPERVISORS
PROF. KJ. KUNERT
PROF. CA. CULLIS
December 2007
The financial assistance of the National Research Foundation (NRF) towards this research is
hereby acknowledged. Opinions expressed and conclusions arrived at are those of the author and
are not necessarily to be attributed to the NRF.
© University of Pretoria
DECLARATION
I declare that this thesis, which I hereby submit for the degree, Philosophiae Doctor (Plant
Science-Plant Biotechnology) at the University of Pretoria, is my own work and has not
previously been submitted by me for a degree at any other University
____________________
Signed
15 December 2007
__________________
Date
TABLE OF CONTENTS
PAGES
Summary
I
Thesis composition
II
Acknowledgments
II
Index of figures
III
Index of tables
X
1
Introduction and literature review
1
1.1
The eukaryotic genome
2
1.2
Origin of the chloroplast and mitochondrion
6
1.3
DNA transfer
8
1.3.1 DNA transfer between the organelles and nucleus
8
1.3.2 DNA transfer between viruses and plants
9
I. The banana streak virus (BSV)
9
II. Tobacco vein clearing virus (TVCV)
10
III. Petunia vein clearing virus (PVCV)
11
IV. Rice tungro bacilliform virus (RTBV)
11
1.3.3 DNA transfer between bacteria and plants
11
1.3.4 DNA transfer between fungi and plants
13
1.3.5 DNA transfer between plants and plant mitochondria
14
1.5
Models for gene transfer and integration
17
2
Materials and Methods
20
2.1
Blast Analysis
21
2.1.1
Chloroplast and Mitochondrial Comparison
23
2.1.2
Viral Comparison
23
2.1.3
Bacterial Comparison
24
2.1.4
Fungal Comparison
24
3
Results
26
3.1
Chloroplast and Mitochondrial comparison
27
3.1.1
Chloroplast homologies in the rice nuclear genome
3.1.2
Representation of the chloroplast genome in the rice nuclear
27
genome
28
3.1.3
Chloroplast rRNA genes in the rice nuclear genome
28
3.1.4
Nature of the chloroplast insertions
30
3.1.5
Mitochondrial homologies in therice nuclear genome
30
3.1.6
Representation of the mitochondrial genome in the rice nuclear
genome
31
3.1.7
Mitochondrial ATPase-β genes in the nucleus
34
3.1.8
Co-alignments between the chloroplast and mitochondria
36
3.1.9
Sice distribution of insertions
37
3.2
Viral Comparison
38
3.3
Bacterial Comparison
41
3.4
3.3.1
Bacillus sequence similarities in the rice nuclear genome
41
3.3.2
Xanthomonas sequence similarities in the rice nuclear genome
43
3.3.3
Pseudomonas sequence similarities in the rice nuclear genome
44
Fungal comparison
46
3.4.1
Magnaporthe sequence similarities in the rice nuclear genome
46
3.4.2
Dendogram type 1
47
3.4.3
Dendogram type 2
50
3.4.4
Dendogram type 3
54
4
Discussion
57
4.1
Motivation for this study
58
4.2
Discussion of techniques and results
58
4.2.1
Search techniques and parameters
4.2.2
DNA homology between the plastid genomes and the rice
nuclear genome
4.2.3
58
59
Sequence similarities between the viral genomes and the rice
nuclear genome
62
4.2.4
Sequence similarities between the bacterial genomes and the
rice nuclear genome
4.2.5
65
Sequence similarities between the Magnaporthe genome
and the rice nuclear genome
67
4.3
Insertion dynamics
70
4.4
Models for DNA transfer
71
4.5
Benefits of insertion
72
4.6
Contribution of this study to science
74
4.7
Future perspectives
76
5
References
78
APPENDIX
Table A-1
Chloroplast DNA homologies in the rice nuclear genome
101
Table A-2
Mitochondrial DNA homologies in the rice nuclear genome
194
Table A-3
Regions in the rice genome that align with the chloroplast and
mitochondrial genomes
Table B-1
265
Rice tungro bacilliform virus (RTBV) alignments in the
rice genome
270
Table B-2
RNA viral alignments in the rice nuclear genome
285
Table C-1
Bacillus cereus alignments in the rice nuclear genome
287
Table C-2
Xanthomonas oryzae alignments in the rice genome
307
Table C-3
Pseudomonas syringae alignments in the rice genome
310
Table D-1
Magnaporthe grisea alignments in the rice genome
314
Summary
With an increasing amount of whole genome sequence data becoming available on a
daily basis we have an opportunity to study the interactions and dynamics of different
organisms on a whole genome level. In the past, reports of horizontal gene transfer have
focused mainly on the identification of single genes that show distorted phylogenetic
profiles to that of the organism it was isolated from. This study firstly did whole genome
comparisons between the rice nuclear and plastid genomes to determine the level and
dynamics gene transfer and insertion of the chloroplast ad mitochondrial genomes into
that of the nuclear genome of rice. Secondly, it looked to identify sequence similarities
between the rice genome and microbial genomes by performing whole genome
comparisons between the rice genome and that of several microbial genomes. These
sequences were analyzed further to identify possible instances of horizontal transfer of
DNA from microbes to the rice genome. Using this approach, this study reports several
fragments in the rice genome with significant sequence similarity to that of microbial DNA
fragments. This study also provides evidence supporting horizontal transfer of several of
these fragments. This study provides valuable information regarding intra- as well as
inter-genome DNA transfer dynamics.
I
Thesis Composition
The following thesis comprises of five sections. 1 Introduction and literature review
presents an overview regarding the origin and evolution of the eukaryotic genome as well
as the origin of the chloroplast and mitochondrion. It also review previous reports
regarding DNA transfer between the organelles and nucleus, as well as those regarding
transfer of DNA between various microbes and plants. It also discusses the proposed
models whereby transfer occurs. 2 Materials and Methods outlines the different
strategies and methods and sequences used in the whole genome comparisons and the
analysis of the results. 3 Results describes the results obtained from each of the different
comparisons. 4 Discussion provides an overall discussion of the study and provide
some future perspectives of research in the field of horizontal DNA transfer. In the Annex
the tables detailing the sequence similarities found between the rice genome and the
various other genomes used are presented.
Acknowledgements
I would like to thank the University of Pretoria and the National Research Foundation for
financial assistance that allowed me to conduct and complete my research.
Special
thanks also to Prof. Karl Kunert for years of patience and support as well as his advice
and encouragement. My sincere gratitude and appreciation also goes Prof. Chris Cullis
not only for allowed me to work in his laboratory and to use the facilities of Case Western
Reserve University to perform the whole genome comparisons, but also for his valuable
inputs and for sharing his vast knowledge on genomics and for his guidance. This thesis
would not have been completed if not for the help and support from friends, family and
lab colleagues. Thanks for all your encouragement and support throughout my project.
II
Index of figures
3
Figure 1.1
A schematic diagram of the ring of life.
5
Figure 1.2
The common ancestor of eukaryotes, bacteria, and archaea.
13
Figure 1.3
A diagrammatic summarization of all major cellular reactions involved in
Agrobacterium T-DNA transport.
27
Figure 3.1
Distribution of chloroplast homologies in the rice nuclear genome.
28
Figure 3.2
Representation of the chloroplast genome in the nuclear genome of rice.
29
Figure 3.3
Chloroplast rRNA insertions in the nuclear genome.
30
Figure 3.4
Chloroplast insertions on rice chromosome 12.
31
Figure 3.5
Distribution of mitochondrial homologies in the rice nuclear genome.
32
Figure 3.6
Representation of the mitochondrial genome in the nuclear genome of rice.
33
Figure 3.7
Localization of plastid NADH dehydrogenase subunits in the nuclear genome
of rice.
III
33
Figure 3.8
Position of the NADH subunits (red wide box) relative to the chloroplast
(green) and mitochondrial (blue) insertions.
35
Figure 3.9
Location of the five chloroplast ATPase CF1 β-subunit copies.
36
Figure 3.10
Alignment of the translated coding sequences of the two nuclear ATPase-β
copies in rice (Rice1 and Rice5) and the rice mitochondrial copy (Mt).
37
Figure 3.11
Mitochondrion, chloroplast and mitochondrion-chloroplast co-alignments on
each of the rice nuclear chromosomes.
38
Figure 3.12
Size distribution of plastid insertions in the nuclear genome.
40
Figure 3.13
Positions of the viral homologies in rice.
41
Figure 3.14
Distribution of Bacillus cereus alignments on the rice karyotype.
43
Figure 3.15
Distribution of Xanthomonas alignments on the rice karyotype.
45
Figure 3.16
Distribution of Pseudomonas alignments on the rice karyotype.
46
Figure 3.17
Distribution of Magnaporthe grisea alignments on the rice karyotype.
48
Figure 3.18
Sequence dendogram from a multiple sequence alignment with the rice
fragment 3:4074435:4074559
IV
49
Figure 3.19
Sequence dendogram from a multiple sequence alignment with the rice
fragment 10:65974:66122.
50
Figure 3.20
Sequence dendogram from a multiple sequence alignment with the rice
fragment 3:11502555 – 11502670.
51
Figure 3.21
Sequence dendogram showing the relationship between a DNA fragment
from a multiple sequence alignment with the rice fragment 6:4668751 –
4669004.
52
Figure 3.22
Sequence dendogram showing the relationship between DNA fragments
from a multiple sequence alignment with the rice fragment 8: 5640822 –
5640946.
53
Figure 3.23
Sequence dendogram showing the relationship between DNA fragments
from
a
multiple
sequence
alignment
with
the
rice
fragment
6:
5884317:5884417.
54
Figure 3.24
Sequence dendogram showing the relationship between DNA fragments
from a multiple sequence alignment with the rice fragment 2: 3341370:
3342015.
55
Figure 3.25
Sequence dendogram showing the relationship between DNA fragments
from
a
multiple
sequence
alignment
with
the
rice
fragment
4:
23876766:23876875.
56
Figure 3.26
Sequence dendogram showing the relationship between DNA fragments
from a multiple sequence alignment with the rice fragment 1: 36368256:
36368446.
V
Index of tables
7
Table 1.1
Mitochondrial and chloroplast genome sizes.
16
Table 1.2
Published accounts of horizontally acquired genes shown or thought to be
located in plant mitochondrial genomes.
101
Table A-1
Chloroplast DNA homologies in the rice nuclear genome.
194
Table A-2
Mitochondrial DNA homologies in the rice nuclear genome.
265
Table A-3
Regions in the rice genome that align with the chloroplast and mitochondrial
genomes.
270
Table B-1
Rice tungro bacilliform virus (RTBV) alignments in the rice genome.
285
Table B-2
RNA viral alignments in the rice nuclear genome.
287
Table C-1
Bacillus cereus alignments in the rice nuclear genome.
307
Table C-2
Xanthomonas oryzae alignments in the rice genome.
310
Table C-3
Pseudomonas syringae alignments in the rice genome.
314
Table D-4
Magnaporthe grisea alignments in the rice genome.
VI
1
Introduction and literature review
1
With the onset of whole genome analysis, made possible by the increasing amount of available
sequence data, our view on horizontal gene transfer (HGT) is rapidly changing. Scientists are
becoming aware that transfer of DNA between non-related species is occurring at much higher
rates than was previously thought. This introduction presents an overview of the relevant
literature available on this subject, particularly focusing on transfer events involving plant
genomes as the recipient genome from various donor genomes including plants, viruses,
bacteria and fungi.
1.1
The eukaryotic genome
Genomics and proteomics have greatly increased our awareness of the differences between
eukaryotic and prokaryotic cells. The origin of the eukaryotic cell is enigmatic and complex.
Early studies of nuclear-encoded enzymes, transfer RNAs, ribosome structures and ribosomal
RNA catalogues implied deep, but unresolved, connections between prokaryotes and
eukaryotes (Rivera and Lake, 2004). Informational genes (genes involved in transcription and
translation) are most closely related to archaeal genes, whereas operational genes (genes
involved in cellular metabolic processes, such as amino acid biosynthesis, cell envelope and
lipid synthesis), are most closely related to eubacterial genes (Rivera et al., 1998). It has been
difficult to reconcile these conflicting results with the origin of eukaryotes because of the
complicating effects of genome fusions and horizontal gene transfer (HGT) on phylogenetic
reconstructions. Several groups have inferred that the eukaryotic nuclear genome derives from
HGT through the fusion of archaebacterial and eubacterial genomes (Feng et al., 1997; Moreira
and Lopez-Garcia, 1998; Rivera et al., 1998; Horiike et al. 2001; Rivera and Lake, 2004), but
this interpretation has recently been called into question (Kurland et al., 2006).
Using a recently developed algorithm to do a conditioned reconstruction based on the two
character states of gene presence and absence, which can reconstruct genome fusions, Rivera
and Lake (2004) presented evidence that the eukaryotic genome arose through the fusion of
two diverse prokaryotic genomes. One fusion partner branches from deep within an ancient
photosynthetic clade, and the other is related to the archaeal prokaryotes. The eubacterial
organism is either a proteobacterium or a member of a larger photosynthetic clade that includes
the Cyanobacteria and the Proteobacteria. They therefore suggested that a more accurate
representation of the classic tree of life should be a ring of life (Figure 1.1). However, to state
2
that the eukaryotic cell is the result of a simple fusion of an archaeon and bacterium is an
oversimplification. This is supported by the existence of 347 eukaryotic signature proteins
(ESPs) identified by Hartman and Federoy (2002). This finding agrees with the predictions of
the ABC hypothesis. This hypothesis assumes that the nucleus formed from the endosymbiosis
of an archaeon and a bacterium in a third cell, C. One can symbolize this new conjecture as
E = A + B + C. This theory would imply that there are three cellular domains despite the large
infusion of prokaryotic proteins into the eukaryotic cell because of endosymbiosis (Hartman and
Federoy, 2002).
Fugure 1.1: A schematic diagram of the ring of life. The eukaryotes plus the two eukaryotic root
organisms (the operational and informational ancestors) comprise the eukaryotic realm.
Ancestors defining major groups in the prokaryotic realm are indicated by small circles on the
ring. The Archaea, shown on the bottom right, includes the Euryarchaea, the Eocyta and the
informational eukaryotic ancestor. The Karyota, shown on the upper right of the ring, includes
the Eocyta and the informational eukaryotic ancestor. The upper left circle includes the
Proteobacteria and the operational eukaryotic ancestor. The most basal node on the left
represents the photosynthetic prokaryotes and the operational eukaryotic ancestor (adapted
from Rivera and Lake, 2004).
3
These hypotheses that attribute eukaryote origins to genome fusion between archaea and
bacteria (Feng et al., 1997; Ribeiro and Golding, 1998; Lopez-Garcia and Moreira, 1999;
Cavalier-Smith 2002; Rivera and Lake, 2004) are uninformative about the emergence of the
cellular and genomic signatures of eukaryotes namely the subdivision into subcellular
compartments (SSCs) and the eukaryotic signature proteins (ESPs). The presence of ESPs and
SSCs are used to suggest an alternative hypothesis: while archea, bacteria and eukaryotes
might have shared common ancestors, the eukaryotic subdivision into sub-cellular
compartments (SSCs) define a unique cell type that cannot be deconstructed into features
inherited directly from archaea and bacteria (Kurland et al., 2006). Because their cells appear
simpler, prokaryotes have traditionally been considered ancestors of eukaryotes (Knoll, 1992;
Baldauf, 2003). Nevertheless, comparative genomics has confirmed a lesson from paleontology:
evolution does not proceed monotonically from the simpler to the more complex (Andersson and
Kurland, 1998; Klasson and Andersson, 2004; Olsen, 1999). The many ESPs within the
subcellular structures of eukaryote cells provide landmarks to track the trajectory of eukaryote
genomes from their origins. It is agreed that the unrooted tree of life divides into archaea,
bacteria, and eukaryotes (Figure 1.2), whether using gene content, protein-fold families, or RNA
sequences (Woese et al., 1990; Korbel et al., 2002; Snel et al., 2002),
On such unrooted trees, the three domains diverge from a population that can be called the last
universal common ancestor (LUCA). In this case it is the hypothetical node at which the three
domains combine in unrooted trees (Kurland et al., 2006). Once the data based on the bestmatch BLAST protocol are set aside, there seems to be no phylogenetic data available to
support the idea that the eukaryotic genome originated as a fusion of bacterial and archaeal
genomes. Rather, there are phylogenetic data, such as that for the translation apparatus, the
transcription apparatus, and glycolysis, suggesting that all three domains are vertical
descendents of a common ancient ancestor (Olsen and Woese, 1996; Canback et al., 2002;
Woese, 1998; 2000; 2002).
4
Figure 1.2: The common ancestor of eukaryotes, bacteria, and archaea may have been a
community of organisms containing the following: autotrophs that produced organic compounds
from CO2 either photosynthetically or by inorganic chemical reactions; heterotrophs that
obtained organics by leakage from other organisms; saprotrophs that absorbed nutrients from
decaying organisms; and phagotrophs that were sufficiently complex to envelop and digest
prey. +M: endosymbiosis of mitochondrial ancestor. (adapted from Kurland et al., 2006).
Regardless of the exact origin of eukaryotic cells, it is believed that they acquired genetic
material through horizontal transfer events from various sources and that it is an ongoing
process. There is evidence of gene transfer in all lineages of life such as the recently described
transfer of genes from bacteria and nematodes to insects (Hotopp et al., 2007). The following
review however only focuses on the documented transfer events between plants and various
microbial donors.
5
1.2
Origin of the chloroplast and mitochondrion
Chloroplasts and mitochondria are in many aspects similar to each other. Both function to
generate metabolic energy and both have their own sets of genes that are more similar to those
of prokaryotes than those of eukaryotes and as well as their own protein-synthesizing
machinery. It is now commonly believed that both chloroplast and mitochondria are the
consequence of endosymbiotic events. The ‘Endosymbiotic Theory’ was first proposed by
former Boston University Biologist Lynn Margulis in the 1960's and officially in her 1981 book
"Symbiosis in Cell Evolution". Although now accepted as a well-supported theory, both she and
the theory were ridiculed by mainstream biologists for a number of years. Thanks to her
persistence, and the large volumes of data that support this hypothesis gathered by her and
many other scientists over the last 40 years, biology can now offer a plausible explanation for
the evolution of eukaryotes. According to the ‘Endosymbiotic Theory’, eukaryotes evolved when
archaeal and eubacterial cells merged in anaerobic symbiosis. The archaeal cell provided the
cytoplasm while the eubacterial cell (a spirochete) allowed for mobility and, eventually, mitosis.
Some of these anaerobic cells then incorporated oxygen-respiring eubacteria to become
mitochondria-containing aerobes from which most protoctists, animals, and fungi evolved.
Finally, some of these aerobes went on to incorporate photosynthesizing cyanobacteria to
become chloroplast-containing algae and plants. The divisions or domains implied by this
description (Archaea, (true) Bacteria, and Eukarya) are consistent with the widely acknowledged
classification system described by Olsen et al. (1994).
Mitochondrial genome sizes are variable (Table 1.1) and are unrelated to the complexity of the
organism. Most multicellular animals have small mitochondrial genomes with a compact genetic
organization, the genes being close together with little space between them. Lower eukaryotes,
as well as flowering plants, have larger and less compact mitochondrial genomes, with a
number of the genes containing introns. Chloroplast genomes have less variable sizes (Table
1.1). In many eukaryotes the circular genomes coexist in the organelles with linear versions
and, in the case of chloroplasts, with smaller circles that contain subcomponents of the genome
as a whole. The latter pattern reaches its extreme in the marine algae called dinoflagellates,
whose chloroplast genomes are split into many small circles, each containing just a single gene
(Zhang et al., 1999). We also now realize that the mitochondrial genomes of some microbial
eukaryotes (e.g. Paramecium, Chlamydomonas and several yeasts) are always linear (Nosek et
al., 1998).
6
Table 1.1: Mitochondrial and chloroplast genome sizes
Species
Type of organism
Genome size (kb)
Plasmodium falciparum
Protozoan
6
Mus musculus
Vertebrate (mouse)
16
Homo sapiens
Vertebrate (human)
17
Aspergillus nidulans
Ascomycete fungus
33
Saccharomyces cerevisiae
Yeast
75
Brassica oleracea
Flowering plant
160
Arabidopsis thaliana
Flowering plant
367
Oryza sativa
Flowering plant
490
Zea mays
Flowering plant
570
Cucumis melo
Flowering plant
2500
Pinus tunbergii
Conifer
120
Pisum sativum
Flowering plant (pea)
120
Marchantia polymorpha
Liverwort
121
Oryza sativa
Flowering plant (rice)
136
Triticum aestivum
Flowering plant
136
Zea mais
Flowering plant
140
Arabidopsis thaliana
Flowering plant
155
Nicotiana tabacum
Flowering plant (tobacco)
156
Nephroselmis olivacea
Algae
201
Mitochondrial genomes
Chloroplast genomes
Genome sizes obtained from NCBI
7
1.3
DNA transfer
1.3.1
DNA transfer between the organelles and nucleus
Fragments of chloroplast and mitochondrial DNA are often found in nuclear genomes (Farrelly
and Butow 1983; Scott and Timmis 1984; Ayliffe and Timmis 1992; Thorsness and Fox 1990;
Sun and Callis, 1993; Yuan et al., 2002) and the transfer of DNA from the chloroplast to the
nucleus is known to be an ongoing and frequent process (Matsuo et al., 2005; Shahmuradov et
al., 2003; Ayliffe and Timmis, 1992, Stegemann et al., 2003). Throughout evolution, chloroplasts
and mitochondria appear to have lost most of their ancestral genes. It is thought that many
genes have been either transferred to the nucleus (i.e. by an 'endosymbiotic gene transfer') or
lost completely (Martin and Hermann, 1998; Race et al., 1999). During evolution, organelles
export their genes to the nucleus, but re-import the products with the help of transit peptides and
protein-import machinery, so that proteins are retained in organelles, but most of the genes are
not. This process, over time, concentrates genetic material in nuclear chromosomes. Generegulatory processes under the control of the nucleus are more complex and interrelated than
those under the control of organelles (Herrmann, 1997).
Some chloroplast genes have been extensively studied, especially the rbcL gene for the large
subunit of Rubisco (reviewed by Clegg, 1993). In land plants and green algae, the rbcL locus is
found on the large single copy region (LSC) in the chloroplast genome, and the rbcS locus for
the small subunit of Rubisco is found in the nuclear genome (Clegg et al., 1997). However, in
cyanobacteria, the rbcL and rbcS genes are adjacent to one another (Nierzwicki-Bauer et al.,
1984). Thus, the rbcS gene in plants was probably transferred to the nucleus, and subsequently
lost, from the chloroplast very early in the evolution of the plants. An example of a more recent
transfer is the rpl22 gene in legumes (Gantt et al., 1991). Gantt et al. (1991) also found that
tobacco rpl22 probes hybridized in all angiosperm cpDNA tested, except in legumes. However,
rpl22 was confirmed to be in the nucleus, thus legumes has lost rpl22 from the chloroplast
genome after its transfer to the nuclear genome. An example from the mitochondrion is the αsubunit of F1 ATPase which exists in mitochondrial DNA in some eukaryotes but in nuclear DNA
in others (Gray, 1992). Furthermore the ribosomal protein gene rps10 exists in the mitochondrial
genome in some angiosperm species, but in the nuclear genome in others (Wischmann and
Schuster, 1995; Adams et al., 2000). It has also been reported that the respiratory gene cox2,
which is normally present in mitochondria, is variably involved in the nuclear genome in legume
8
species. Some legume species possess the gene in both mitochondrial and nuclear genomes,
some in the mitochondrial genome only, and others in the nuclear genome only (Adams et al.,
1999). Gene transfer also takes place between the organelles (Joyce and Gray, 1989; Menaud
et al., 1998). In Arabidopsis thaliana for example, a gene coding for methionyl-tRNA synthetase
in the mitochondrial genome may have originated in the chloroplast (Menaud et al. 1998). In
wheat, three tRNA mitochondrial genes were found that show high sequence similarity to
chloroplast genes (Joyce and Gray, 1989).
1.3.2
DNA transfer between viruses and plants
Unlike animal and bacterial viruses, it was believed that plant viruses integrate rarely, if at all,
into their host genomes (Grierson and Covey, 1988). Observations over the past few years have
changed this view, as an increasing number of integrated plant viral sequences are being found
in plant genomes. Most plant viruses have single-stranded RNA genomes. There are however
two groups of DNA viruses that infect plants: the single-stranded DNA Geminiviridae that
replicate via a rolling circle mechanism and the double-stranded DNA (dsDNA) Caulimoviridae,
comprising the caulimoviruses and the badnaviruses, that replicate by reverse transcription
(Grierson and Covey, 1988). Examples of viral sequences that have been found integrated into
plant genomes are a single insertion of sequences related to a geminivirus, which has a singlestranded circular DNA genome, into tobacco nuclear DNA were of multiple direct repeats of
partial geminivirus sequence (Kenton et al., 1995; Bejarano et al., 1996; Ashby et al., 1997).
These sequences included only the origin of replication and the adjacent viral replication
protein, transcription was not detectable and there was no associated virus infection. Examples
of integrated viral sequences in plant genomes include:
I.
The banana streak virus (BSV)
BSV is a member of the Badnavirus genus and the causal agent of viral leaf streak of
banana and plantain (Lockhart, 1986). BSV contain a circular dsDNA genome of 7.4 kbp
in size (Harper and Hull, 1998). During tissue culture, infections can arise in healthy
plants from integrated BSV sequences (Harper et al., 1999). Every Musa spp. examined
to date contains BSV DNA integrated into its DNA. Probing of Musa genomic libraries
with BSV probes has identified two classes of BSV integrants. The first class of
9
sequences consists of partial BSV sequences (Geering et al., 2001; Ndowora et al.,
1999). The second class consists of multiple copies of a complete BSV genome, which
are believed to be the source of BSV infections that arise during tissue culture (Harper et
al., 1999; Ndowora et al., 1999).
II.
Tobacco vein clearing virus (TVCV)
TVCV is a distinct member of the family Caulimoviridae, differing from typical
caulimoviruses in both genome organization and biological properties. It is a plant
pararetrovirus that occurs only in Nicotiana edwardsonii (Lockhart et al., 2000). The first
evidence of TVCV sequences integrated in the N. edwardsonii genome was established
by hybridization analysis. Cloned TVCV genomic DNA hybridized to Eco R1- and Hind
III-restriction digested fragments of N. edwardsonii total genomic DNA that were larger
than virion genomic DNA, suggesting that the plant DNA moiety hybridizing to TVCV
DNA was an integral part of the host genome and not free virion DNA (Lockhart et al.,
2000). At present, no genomic clone containing the entire TVCV genome has been
identified.
The genome of N. tabacum also contains pararetrovirus-like sequences, tobacco
pararetrovirus-like (TPV-L) (Jakowitsch et al., 1999). Despite a copy number of
thousands in the N. tabacum genome, there was no evidence of any functionally intact
viral sequences, the TPV-L clones sequenced containing frameshifts and stop codons.
No episomal infections were detected, although there was evidence that the sequences
were transcribed. Based on an analysis of the junctions between plant and viral
sequences, it was proposed that integration occurred by illegitimate recombination
events involving gap regions of open circular viral DNA. TPV-L sequences have, like
TVCV, been detected in various other Nicotiana species including N. otophora, N.
sylvestris and N. tomentosiformis, and are also detected in Datura and tomato but not in
petunia, Arabidopsis, or pea (Jakowitsch et al., 1999).
10
III.
Petunia vein clearing virus (PVCV)
PVCV is a member of the family Caulimoviridae and the coding information is present as
one large open reading frame within the viral genome. Data indicate that the entire
PVCV genome is present in the P. hybrida cv Himmelsroschen genome (RichertPöggeler and Shepherd, 1997). The restriction endonuclease pattern and copy number
of the PVCV integrant in the white flowered P. axillaris ssp. axillaris plants resembles
more closely those of P. hybrida than do those of P. integrifolia ssp. inflata. The
correlation of integrated sequence, stress or physiological change, and detectable virus
indicates a similar phenomenon to BSV and TVCV (Harper et al., 2002).
IV.
Rice tungro bacilliform virus (RTBV)
There are also two reports by Nagano et al., (2000) and Kunii et al., (2004) regarding
segments of the rice tungro bacilliform virus (RTBV), in the nuclear genome of rice. Kunii
et al., (2004) characterized RTBV-like sequences in the Japonica (cv. Nipponbare)
genome. These sequences denoted endogenous RTBV-like sequences (ERTBVs), were
highly rearranged and dispersed throughout the rice genome. It was found that these
sequences were unlikely to have functional potential as a virus, while phylogenetic
analysis showed that at least three times integrations of authentic ERTBVs occurred
during Oryza speciation
1.3.3
DNA transfer between bacteria and plants
Nuclear HGT is rare in multicellular eukaryotes, with most known cases involving bacteria as
donors (Garcia-Vallve et al., 2000; Rosewich and Kistler, 2000; Screen and St Leger, 2000;
Intrieri and Buiatti, 2001; Veronico et al., 2001; Watts et al., 2001; Wolf and Koonin, 2001;
Kondo et al., 2002; Zardoya et al., 2002; Hall et al., 2005). The best characterized example of
horizontal DNA transfer between bacteria and plants is the Agrobacterium system (Figure 1.3).
Although plants represent the natural hosts for Agrobacterium, this microorganism can also
genetically transform a wide range of other eukaryotic species, from yeast (Bundock et al., 1995;
Piers et al., 1996; Sawasaki et al., 1998) to fungi (de Groot et al., 1998; Gouka et al., 1999;
11
Chen et al., 2000; Rho et al., 2001) as well as human cells (Kunik et al., 2001). Unlike other
plant pathogenic bacteria which affect the host-plant physiology by secreting compounds such
as toxins or growth regulators, Agrobacterium tumefaciens and its related pathogenic species,
A. rhizogenes and A. vitis, directly modify the genetic material of their hosts. This genetic
modification results from the transfer and integration into the plant genome of a specific DNA
segment termed transferred DNA or T-DNA, from the bacterial Ti (tumor inducing) plasmid
(Jouanin, 1984). Plant genetic transformation by A. tumefaciens requires the presence of two
genetic components located on the bacterial Ti plasmid: (i) T-DNA, the actual genetic element
transferred into the plant cell genome; and (ii) the virulence (vir) region composed of seven
major loci (virA, virB, virC, virD, virE, virG and virH), encoding most components of the protein
machinery mediating T-DNA transfer. In addition, a set of A. tumefaciens chromosomal
virulence (chv) genes participates in the early stages of the bacterial chemotaxis and
attachment to the plant cells (Hooykaas and Beijersbergen, 1994; Sheng and Citovsky, 1996;
Zambryski, 1992).
A. rhizogenes is responsible for the formation of adventitious roots known as "hairy roots." The
agropine-type strain of A. rhizogenes has two distinct T-DNA regions, left transferred DNA (TLDNA) and right transferred DNA, in its Ri plasmid. Four loci involved in root induction have been
identified from an analysis of TL-DNA by insertional mutagenesis. They are designated rolA,
rolB, rolC, and rolD (White et al., 1985). Ngrol genes (NgrolB, NgrolC, NgORF13, and
NgORF14) that are similar in sequence to genes in the left transferred DNA (TL-DNA) of A.
rhizogenes have been found in the genome of untransformed plants of Nicotiana glauca (Aoki
and Sy no, 1999). It has been suggested that a bacterial infection resulted in transformation of
Ngrol genes early in the evolution of the genus Nicotiana. It has been demonstrated that other
bacterial species outside the Agrobacterium genus transformed with the Ti-plasmid were also
able to transfer T-DNA to facilitate the transfer of foreign DNA to plants (Broothaerts et al.
2005). Other examples of bacterium-to-plant nuclear genome HGT include the acquisition of
aquaglyceroporins from a eubacterium 1200 million years ago (Zardoya et al., 2002), and of
glutathione biosynthesis genes from an alpha-proteobacterium (Copley and Dhillon, 2002), but
the mechanisms of transfer remains unclear.
12
Figure 1.3: A diagrammatic summarization of all major cellular reactions involved in
Agobacterium T-DNA transport. Steps 1 through 7 indicate sequential processes that occur
during Agrobacterium infection. Step 1, binding of Agrobacterium to the host cell surface
receptors; step 2, recognition of plant signal molecules by the bacterial VirA/VirG sensortransducer system; step 3, activation of the bacterial vir genes; step 4, production of the
transferable T-strand; step 5, formation of the T-complex and its transport into the host plant
cell; step 6, nuclear import of the T-complex; and step 7, T-DNA integration. IM, bacterial inner
membrane; NPC, nuclear pore complex; OM, bacterial outer membrane; PP, bacterial periplasm
(adapted from: Sheng and Cithosky, 1996).
1.3.4
DNA transfer between fungi and plants
Probably the best example of horizontal transfer to plants from a fungal donor involves the cox1
mitochondrial intron. During a survey of plant mitochondrial cytochrome oxidase subunit 1
(cox1) genes, Vaughn et al. (1995) discovered a group I intron in the angiosperm Peperomia
polybotrya. This was surprising, in so far as only group II introns had previously been found to
be associated with plant mitochondria. Phylogenetic analysis revealed different evolutionary
histories for the intron and the exon at that locus and clustered the intron together with group I
13
mitochondrial introns from fungi. It was therefore hypothesized that P. polybotrya acquired the
intron from a fungal donor. A follow-up study (Adams et al., 1998) determined the intron to be
present in all Peperomia species tested, therefore dating the transfer event(s) before the
divergence of the genus. Cho et al. (1998) revealed its presence in 48 genera, albeit with an
extremely patchy distribution. This is in stark contrast to a nearly universal presence of a cox2
group II mitochondrial intron.
In another example of DNA transfer from fungi to plants, sequences similar to fungal
cytoplasmic and mitochondrial virus RNA-dependent RNA polymerase (RdRp) proteins have
also been identified in translated protein sequences from the mitochondrial genomes of
Arabidopsis thaliana and Vicia faba (Marienfeld et al., 1997). Marienfeld et al. (1997) therefore
suggested horizontal transfer probably from fungi to those plant species. Plasmids are another
genetic element in fungi that are involved in HGT between fungal strains as well as between
different species (Taylor, 1986; Collins and Saville 1990; Masel et al., 1993; Yang and Griffiths,
1993; Griffiths et al., 1994; Arganoza et al., 1994; Debets et al., 1994; Kempken, 1995; Van der
Graag et al., 1998). Plasmids have been identified in many fungal species, but are only
infrequently encountered in other eukaryotes (Kempken et al., 1992; Griffiths, 1995). In yeasts,
plasmids are located in the cytoplasm, whereas in filamentous fungi, plasmids are ordinarily
associated with mitochondria (Griffiths, 1995). The S1 plasmid of maize appeares to be closely
related to linear plasmids of ascomycetes (Kempken et al., 1992) and might have been acquired
through a horizontal transfer event. However no model exists to explain DNA transfer from fungi
to plants.
1.3.5
DNA transfer between plants and plant mitochondria
There is evidence that nuclear transposable elements have moved horizontally on numerous
occasions in multicellular eukaryotes. The last couple of years have seen an explosion of
studies reporting additional cases of horizontal transfer of genes in plants (Kidwell and Lisch,
2001; Feschotte and Wessler, 2002; Bergthorsson et al., 2004; Davis and Wurdack, 2004;
Mower et al., 2004; Woloszynska et al., 2004; Nickrent et al., 2004; Davis et al., 2005;
Schönenberger et al., 2005; Diao et al., 2006). DNA transfer facilitated by direct plant-to-plant
contact through parasitism has emerged as a common mechanism of HGT with several reported
HGT events involving parasitic plants as donors (Mower et al., 2004; Davis et al., 2005) or as
14
recipients (Davis and Wurdack, 2004; Nickrent et al., 2004). However, this mechanism is unlikely
to explain all the transfers, as many of the donor and recipient groups do not have a host–
parasite relationship. Other possible mechanisms that have been postulated include illegitimate
pollination, herbivory, bacterial or viral transfer, uptake of naked DNA in the soil, and fungal
pathogens or symbionts (Bergthorsson et al., 2003; Won and Renner, 2003; Davis et al., 2005).
Plant mitochondrial genomes especially experience frequent and evolutionarily widespread
horizontal transfer of genes acquired from other eukaryotes in particular from other plants. Table
1.2 gives a summary of mitochondrial genes acquired through horizontal gene transfer. In one
case it was shown that Amborella trichopoda has acquired, via HGT, partial or full-length copies
of 20 of its 31 mitochondrial genes (Bergthorsson et al., 2004).
In all but one of the 40 plant-to-plant HGT cases reported thus far, the transferred gene is a
mitochondrial gene (encoding a housekeeping respiratory or ribosomal protein), and thus the
dominant mode of HGT in plants reported thus far is mitochondrion-to-mitochondrion. The one
apparent exception, involving chloroplast pvs-trnA in Phaseolus (Woloszynska et al., 2004), may
actually represent mitochondrion-to-mitochondrion transfer too. This is because chloroplast
sequences frequently become incorporated into mitochondrial genomes (Unseld et al., 1997;
Clifton et al., 2004; Sugiyama et al., 2005), and it is therefore possible that Phaseolus acquired
this chloroplast sequence via intermediate transfer through the donor's mitochondrial genome.
Although plant mtDNAs usually contain numerous nuclear- and chloroplast-derived sequences
(Unseld et al., 1997; Clifton et al., 2004; Sugiyama et al., 2005), there is not yet any good
evidence of a plant chloroplast genome containing DNA from other cellular compartments (Rice
and Palmer, 2006). Plant mitochondria possess an active DNA uptake system (Koulintchenko
et al., 2003), though there is no information on a similar system in chloroplast, the ability to
transform chloroplasts in intact plant cells indicate that chloroplast might have a similar DNA
uptake system (Svab et al., 1990). Such an uptake system may be critically important in the
incorporation of both foreign and native DNA. Another well-documented difference between the
two organelles that may account for their differential susceptibility towards HGT is their tendency
to fuse. Plant mitochondria regularly fuse (Arimura et al., 2004; Sheahan et al., 2005), promoting
recombination between parental mitochondrial genomes, whereas chloroplasts very rarely fuse
(Kanno et al., 1997; Mohapatra et al., 1998).
15
Table 1.2: Published accounts of horizontally acquired genes shown or thought to be located in
plant mitochondrial genomes
Citation
Bergthorsson
et
al.
Recipienta
Donorb
Gene
Actinidia
Monocot
rps2
Amborella
Eudicot
atp1
Betulaceae
Unclear
rps11
Caprifoliaceae
Ranunculales
rps11
Sanguinaria
Monocot
3' rps11
Gnetum
Asterid
nad1B-C
Rafflesiaceae
Vitaceae
nad1B-C
Plantago
Orobanchaceae
atp1
Plantago
Convolvulaceae
atp1
Apodanthaceae
Fabales
atp1
(2003)
Won
and
Renner
and
Wurdack
(2003)
Davis
(2004)
Mower et al. (2004)
Nickrent et al. (2004)
Woloszynska
et
al.
Phaseolus
Angiosperm
cp pvs-trnA
et
al.
Amborella
Angiospermc
atp4, atp6, atp8, atp9, ccmB,
(2004)
Bergthorsson
ccmC, ccmFN1, cox2 (2x), cox3,
(2004)
nad1, nad2, nad4, nad5, nad7,
rpl16, rps19, sdh4
Moss
cox2, nad2, nad3, nad4, nad5,
nad6, nad7
Schönenberger et al.
Ternstroemia
Ericaceae
atp1
Bruinsmia
Cyrillaceae
atp1
Botrychium
Santalales
nad1B-C, matR
(2005)
Davis et al. (2005)
a
Recipient lineages are indicated by the genus examined, or when multiple related genera were
found to share the same foreign gene, the family name. Parasitic plants are in bold.
b
Donor lineages as best defined by current data. Parasitic plants are in bold.
c
All but atp9, nad5, nad7, and cox3 are from eudicots, a derived group within angiosperms.
(Table adapted from: Richardson and Palmer, 2007)
16
1.4
Models for gene transfer and integration
There are no models available for the exact mechanism of transfer and integration of foreign
DNA into a new genome. The best studied system is that of Agrobacterium-mediated transfer.
Though the early events that lead to recognition and transfer are reasonably well characterized
(Sheng and Cithosky, 1996) (also see Figure 1.3), the mechanism that leads to DNA integration
is still largely unknown. T-DNA integration is the culmination point of the entire process of the
Agrobacterium-plant cell DNA transfer. T-DNA does not encode enzymatic activities required for
integration (Tinland et al., 1995; Mysore et al., 1998) and plant DNA ligases, must provide these
functions (Ziemienowicz et al., 2000; Friesner and Britt, 2003). Chilton and Que (2003) provide
strong evidence for T-DNA integration into double-stranded breaks created in the plant genome
by a transiently expressed rare cutting endonuclease I-CeuI. Nucleotide sequence analysis of
the plant DNA/T-DNA junctions indicated that T-DNA integration occurred by a non-homologous
end-joining mechanism (Chilton and Que, 2003). Tzfira et al. (2003) utilized the double-stranded
DNA breaks created by transient expression of another endonuclease, I-SceI, to demonstrate
preferential T-DNA integration into these 18 bp long I-SceI recognition sites as determined by
sequencing analyses of integration junctions from 620 independent transgenic lines (Tzfira et al.,
2003). Both studies suggested that T-strands are first converted to double-stranded
intermediates and only then are integrated into the plant DNA (Chilton and Que, 2003; Tzfira et
al., 2003).
Illegitimate recombination has also been proposed as a model for integration (Gheysen et al.,
1991). Illegitimate recombination is basically a two-step process: DNA ends are first generated
and then joined. For T-DNA integration, the ends of the T-DNA would be joined to plant
chromosomal breaks. The T-DNA most likely enters the plant as a linear molecule (Zambryski,
1988; Bakkeren et al., 1989). Free ends within the plant DNA, which is the other substrate for
the reaction, can be generated in a variety of ways, such as errors during replication or repair,
or nicks during exposure of single strands in transcription (Roth and Wilson, 1988). Several
enzymes involved in these processes, such as topoisomerases I and II, are known to nick or
break DNA. There are indications that T-DNA would preferentially integrate in transcriptionally
active regions (Koncz et al., 1989; Herman et al., 1990). This could be explained by the higher
likelihood of nicks in these regions, as well as the better accessibility of the target due to
unraveling of the nucleosomes of transcribed DNA by comparison with tightly coiled,
transcriptionally silent sequences (Patient and Allan, 1989). It has also been hypothesized that
17
histone H2A plays an important role in illegitimate recombination of T-DNA into the plant
genome. Arabidopsis plants with mutants in this gene are recalcitrant to Agrobacterium root
transformation (Mysore et al., 2000).
The infection cycle of plant viruses, unlike those that infect vertebrates and bacteria, is not
known to involve an integration event. In the two groups of DNA viruses that infect plants, the
single-stranded DNA Geminiviridae replicates via a rolling circle mechanism and the doublestranded DNA Caulimoviridae, replicate by reverse transcription, making use of a virally
encoded reverse transcriptase (Grierson and Covey, 1988). They are classified as
pararetroviruses to distinguish them from true retroviruses, which have RNA genomes.
Retrovirus DNA integrates into host chromosomes by means of a virally encoded integrase
(Patience et al., 1997), pararetroviruses generally lack the gene for this enzyme, and integration
is not required for virus replication. With the absence of an integrase enzyme, the integration of
viral sequences into the plant genome must take place via illegitimate recombination, in cells
undergoing active genetic processes (Hull et al., 2000).
Fungi have no known infectious viruses analogous to transducing bacteriophage that transport
foreign DNA from one individual to another in prokaryotes. However, several experimental
systems point to potential ways in which DNA could move between fungi or between fungi and
other organisms. Gene transfer through mechanisms similar to DNA transformation appears to
take place in culture or in natural settings, as evidenced by transfer of genes and plasmids
(Hoffmann et al., 1994; Kempken, 1995).
With the ever increasing amount of available sequence and complete genome data such as the
rice genome (Goff et al. 2002; International Rice Genome Sequencing Project 2005), comparing
whole genomes using computational biology offers a new way to search and identify possible
instances of DNA transfer and sharing between non-related genomes. The aim of this study was
to identify sequences in the rice nuclear genome sharing similarities with non-rice nuclear
sequences, originating either from the rice chloroplast or mitochondrial genomes, or from other
possible sources such as viruses, bacteria and fungi associated with plants. Since it is possible
that ‘accidental’ DNA transfer, in contrast to the specific and directed transfer seen with
Agrobacterium, might occur as well between rice and its associated microorganisms, an
important focus of this study was not to limit the search to possible transferred genes but to
asses the total amount of sequence similarities between the different genomes, including
18
functional and non-functional sequences. The thesis describes the results found when looking at
chloroplast and mitochondrial DNA transfer to the rice nuclear genome. It also provides a
comparison between the amount and representation of the different organellar genomes in the
nuclear genome of rice. It further describes the different searches done in order to identify
sequence similarities in the rice nuclear genome and several rice related viruses, tree different
bacterial genomes, namely Bacillus cereus, Pseudomonas syringae pv. syringae and
Xanthomonas oryzae pv. oryzae, chosen because of their different degrees of association with
rice. Lastly it provides a description of the shared sequences between the nuclear genome of
rice and that of the rice blast fungi, Magnaporthe grisea.
19
2
Materials and Methods
20
2.1 Blast analysis
All homology searches were done against the Oryza sativa cv. japonica genome database
release 16.0 available from TIGR.
Blastn searches were done on a local server against the rice genome (release 16.0 downloaded
from the TIGR website) using the following Perl scripts.
Larger genomes were firstly divided into 100 000 bp sections using the splitter script in Perl
Example:
splitter -size 100000 -sequence ‘Sequence name’ -outseq ‘Sequence
name’.split
#creates an output file with FASTA records 100000 bases long
#‘Sequence name’ = name of the sequence file to be divided
The subset of sequences was then saved as separate .fasta files in a folder named fastafiles.
These files were searched against the rice genome database on the local server using the
following script:
use strict;
use Bio::SeqIO;
use Bio::Tools::Run::StandAloneBlast;
my $DB="RICE";
#Which blast database
my $DIR="fastafiles";
#where are the query files
21
my @files = `ls $DIR`;
#get a list of all files in $DIR
my $element="";
#init $element;
foreach $element (@files){
#put the next element in @files
into $element
chomp $element;
#remove extraneous \n
my $FILE = "$DIR/$element";
# setup a var with path to file
my $OUTPUT = "blast.out.".$element;
my @params = ('program' =>'blastn','database' => $DB,'outfile'
=> $OUTPUT,'_READMETHOD' => 'Blast');
#blast.out.$element
should
generate
an
ouput
file
for
each
query file so you do not overwrite previous blasts
my $factory = Bio::Tools::Run::StandAloneBlast->new(@params);
my $seq_in = Bio::SeqIO->new (-file => $FILE ,'-format' =>
'fasta');
my $query = $seq_in->next_seq();
print "Starting blast on $FILE","\n";
#let the user know
where we are
This script resulted in a output file for each sequence file to be searched against the database
containing the alignment results (if any). The individual fragments from the different genomes
that produced alignments with e-values e-20 or smaller were then realigned with the rice
genome database on the Gramene genome browser (http://www.gramene.org) to obtain the
specific start and end positions on the various rice chromosomes. The results of these
alignments were then combined in excel spreadsheets for each genome comparison for further
analysis. Mapping the alignment data back onto the karyotype of rice was done using the
various facilities provided by Gramene.
22
The specific criteria and sequences used for each analysis are as follows:
2.1.1
Chloroplast ad Mitochondrial Comparison
The Oryza sativa cv. japonica chloroplast genome (NC_001320) of 134525 bp as well as the
mitochondrial genome (BA000029) of 490520 bp were obtained from the National Center for
Biotechnology Information (NCBI) website (http://www.ncbi.nlm.nih.gov/index.html).
For the chloroplast and mitochondrial genomes the intact sequence were used in homology
searches against the rice. Only alignments greater than 100 bp with a homology of 95% and
greater were kept for further analysis. Each of these 100bp and greater fragments were then realigned with the rice genome using the Gramene genome browser. This provided the specific
start and end positions of the alignments on the different rice chromosomes. Once again only
alignments of 100 bp and greater with and expectation value of e-20 and smaller were used. All
repeated sequences within the plastid genomes that aligned to the same positions on the rice
genome as well as internal and smaller alignments within larger alignments in the rice
chromosomes were removed from the data sets. Where more than one fragment aligned to the
same position in the rice nuclear genome, the one with the lower homology or greater e-value
were removed.
2.1.2
Viral Comparison
The viral genomes used in the comparison included: Magnaporthe grisea virus 1 (NC_006367 );
Oryza rufipogon endornavirus (NC_007649); Oryza sativa endornavirus (NC_007647); Rice
dwarf virus (Taxonomy id: 10991); Rice gall dwarf virus (Taxonomy id: 10986); Rice black
streaked dwarf virus (Taxonomy id: 10990); Rice grassy stunt virus (Taxonomy id: 66266); Rice
ragged stunt virus (Taxonomy id: 42275); Rice stripe virus (Taxonomy id: 12331); Rice tungro
bacilliform virus (NC_001914); Rice tungro spherical virus (NC_001632); Rice yellow mottle
virus (NC_001575); Rice yellow stunt virus (NC_003746) and the Soil-borne cereal mosaic virus
(Taxonomy id: 100887); Wheat dwarf virus (NC_003326); Maize streak virus (NC_001346);
Sugarcane streak virus (NC_003744); Panicum streak virus (NC_001647); Wheat streak mosaic
23
virus (NC_001886); Wheat eqlid mosaic virus (NC_009805); Sorghum mosaic virus
(NC_004035) and Maize dwarf mosaic virus (NC_003377).
Full length DNA sequences of the viral genomes were submitted to the Gramene Blastn server
(http://www.gramene.org/multi/blastview) for homology and similarity searches against the rice
(Oryza sativa cv. japonica) genome. Searches were done to identify and include distant
homologies with a word size of 9; mismatches scored at -1; gap open penalties at 2 and gap
extension penalties at 1. Results were limited to matches with e-values of e-5 and smaller and
fragments of 100 bp and longer.
2.1.3
Bacterial Comparison
The following bacterial genomes were used in the comparative studies: Bacillus cereus ATCC
10987 (NC_003909), Pseudomonas syringae pv. syringae B728a (NC_007005) and
Xanthomonas oryzae pv. oryzae KACC10331 (NC_006834).
The bacterial genomes were divided into 100 Kb fragments that were each aligned with the rice
genome using the Blastn algorithm. Only alignments greater than 100 bp were kept for further
analysis. Each of these 100 bp and greater fragments were then re-aligned with the rice
genome using the Gramene genome browser (http://www.gramene.org/multi/blastview). This
provided the specific start and end positions of the alignments on the different rice
chromosomes. Once again only alignments of 100 bp and greater with and expectation values
of e-20 and smaller were used. Further identification and characterization of the sequences
were done using the facilities provided by the National centre for biotechnology information
(http://www.ncbi.nlm.nih.gov/index.html). All repeated sequences within the bacterial genomes
that aligned to the same positions on the rice genome as well as internal and smaller alignments
within larger alignments in the rice chromosomes were removed from the data sets.
2.1.4 Fungal Comparison
The Magnaporthe grisea genome (Data Version 10/31/2003; Release 2.3) were downloaded
from Magnaporthe Sequencing Project, Ralph Dean, Fungal Genomics Laboratory at North
24
Carolina State University (www.fungalgenomics.ncsu.edu), and Centre for Genome Research
(www.broad.mit.edu).
The Magnaporthe genome was used in the contigs of various lengths in which it was
downloaded and aligned against the rice genome on a local server using Perl scripts. Only
alignments of 100 bp and greater with and expectation values of e-20 and smaller were used.
All repeated sequences within fungal genomes that aligned to the same positions on the rice
genome as well as internal and smaller alignments within larger alignments in the rice
chromosomes were removed from the data sets. Sequence dendograms were created by
multiple alignments using ClustalW and sequence fragments with the best homologies
compared to the rice genomic fragments found with Blastn.
25
3
Results
26
3.1 Chloroplast and Mitochondrial Comparison
3.1.1
Chloroplast homologies in the rice nuclear genome.
A substantial amount of homologies were found between the chloroplast and nuclear genomes.
Table A-1 (Appendix, pp 101-193) shows the alignment data, including all the alignments found
during the initial BLAST search. In order to eliminate small sequence repeats and nonsignificant alignments only fragments 100 bp and greater with 95% or higher homology were
used. This 95% threshold was also used to limit the inclusion of sequences of mitochondrial
origin in the chloroplast analysis and vice versa.
Using the above mentioned parameters, the rice chloroplast genome aligned to a total of
778678 bp in the nuclear genome. Figure 3.1 shows the distribution of these homologous
regions over the rice karyotype. A total of 1070 alignments that made up the 778678 bp were
used to draw the map. However fewer positions are visible on the map as insertions tend to
group together in certain areas rather than being randomly distributed over the whole genome.
Figure
3.1:
Distribution
of
chloroplast
homologies
in
the
rice
nuclear
genome.
27
3.1.2
Representation of the chloroplast genome in the rice nuclear genome
Figure 3.2 shows the frequency in which each region of the chloroplast genome is represented
in the nuclear genome of rice. It is clear from this figure that while most of the chloroplast
genome is present to some level in the nucleus there are some areas like 16S rRNA and the
NADH dehydrogenase subunits that is present at a much higher frequency than the rest of the
chloroplast genome.
Figure 3.2: Representation of the chloroplast genome in the nuclear genome of rice. Vertical
bars indicate the frequency (number of insertions) in which each area is present in the nuclear
genome. Below are some of the genes that present in the areas that are highly represented.
These are: psbD – PSII D2-protein; rpoB – RNA polymerase subunit B; atpA - H+-ATPase
subunit CF1 α; spbG – PSII G protein; ndhC - NADH dehydrogenase ND3 subunit; rps3 - 30S rprotein CS3; rpl2 - 50S r-protein CL2; rps7 - 30S r-protein CS7; rrn16S – 16 S rRNA; ndhB NADH dehydrogenase ND2 subunit.
3.1.3
Chloroplast rRNA genes in the rice nuclear genome
As mentioned one of the chloroplast genome regions that is present at a high frequency in the
nuclear genome is that of the rRNA genes. Thirty-nine fragments of the 16S rRNA larger than
100 bp make up 29035 bp (3.7%) of the total chloroplast homology with the nuclear genome.
For the 23S rRNA gene 46 fragments and 38012 bp make up 4.8% of the total chloroplast
insersions. The 5S rRNA gene is only present 26 times in fragments larger than 100 bp that
28
accounts for 9071 bp (1.2%). Together these account for 9.8% of the chloroplast insertions in
the rice nuclear genome. Figure 3.3 shows the distribution and frequency of these rRNA
subunits in the rice nuclear genome.
Figure 3.3: Chloroplast rRNA insertions in the nuclear genome showing the position and the
density of the insertions. Max refers to the density or number of insertions in a particular region.
29
3.1.4
Nature of the chloroplast insertions
Though some chloroplast insertions represent large or whole chloroplast genome insertions with
subsequent deletions, there are areas that seem to have arisen from the insertion of multiple
fragments in the same area. Figure 3.4 shows the composition of such an area on chromosome
12 of rice. The numbers on top shows the position in relation to the chloroplast genome,
measured in base pairs from the origin of replication, while the bottom numbers represent the
start and end positions of the insertions on chromosome 12. The spacer sequences between
the insertions were found contain a high number of thiamine (T) repeats.
Figure 3.4: Chloroplast insertions on rice chromosome 12.
3.1.5
Mitochondrial homologies in the rice nuclear genome
Homologies between the mitochondrial and nuclear genomes were less than compared with the
chloroplast genome. Table A-2 (Appendix, pp 194-264) shows the raw alignment data, including
all the alignments found during the initial BLAST search. This includes fragments less than 100
pb with less than 95% homology that were discarded during further analysis.
Using the above mentioned parameters, the rice mitochondrial genome aligned to a total of
614165 bp in the nuclear genome. Figure 3.5 shows the distribution of these homologous
regions over the rice karyotype. A total of 1329 alignments were used to draw the map.
However as for the chloroplast, individual insertions seem to be grouped together in certain
areas rather than being randomly distributed over the whole genome.
30
Figure
3.1.6
3.5:
Distribution
of
mitochondrial
homologies
in
the rice
nuclear
genome.
Representation of the mitochondrial genome in the rice nuclear genome
The representation profile of the mitochondrial genome on the nucleus is shown in Figure 3.6.
The distribution pattern shows that only small parts of the genome is represented at high
frequencies while most parts are absent from the nuclear genome. Although the NADH
dehydrogenase subunits are present at high frequencies in the nuclear genome it is mostly
present as fragments rather than complete gene sequences and account for 14841 bp in the
nuclear genome. Figure 3.7 and 3.8 shows the frequency and position of these insertions.
31
Figure 3.6: Representation of the mitochondrial genome in the nuclear genome of rice. Vertical
bars indicate the frequency in which each area is present in the nuclear genome. Below are
some of the features in the regions that are highly represented, like the NADH dehyrogenase
subunits (nad) the ATPase subunits (atpB and atpE as well as the rRNA genes (rrn5, rrn18 and
rrn26).
32
Figure 3.7: Localization of plastid NADH dehydrogenase subunits in the nuclear genome of
rice. Max indicates the number of fragments in that area, the height of the peaks is also an
indication of the length of the insertions.
33
Figure 3.8: Position of the NADH subunits (red wide box) relative to the chloroplast (green) and
mitochondrial (blue) insertions.
3.1.7
Mitochondrial ATPase-β genes in the nucleus
Five copies of the chloroplast ATPase CF1 β-subunit that formed part of the chloroplast
insertions in the nuclear genome were found (Chr. 1:14120102-14121600;
5:20783405-
20784761; 6:23544648-23546144; 10:10349658-10351154 and 12:5610836-5612332). Two
more copies of the ATPase β-subunit were found in the nuclear genome (Chr. 1:2825735128261681 and 5:27245171-27249646). The first is located between two mitochondrial insertions
(1:28097561-28097714 and 1:28361408-28361977) but the second is located well outside of
any plastid DNA insertions, (Figure 3.9). One of the distinguishing features of these two copies
is eight intron-like sequences that interrupt the coding sequence compared to the chloroplast
copies.
34
A similar copy is found in the genome of Arabidopsis thaliana (Chr. 5:2825714-2828663;
At5g08690.1). This has been well annotated in terms of intron and exon positions. The intronlike sequences of the two rice copies is located in the same positions as that of the one in
Arabidopsis. While the exon-sequences were well conserved between the 3 copies the intronsequences showed no homology between the three copies. Figure 3.9 shows the location of the
five chloroplast ATPase CF1 β-subunit copies and the two intron-containing copies in relation to
the chloroplast and mitochondrial insertions in the nuclear genome of rice.
Figure 3.9: Location of the five chloroplast ATPase CF1 β-subunit copies (green arrow, left) and
the two intron-containing copies (red arrows right) in relation to the chloroplast insertions (green
boxes) in the nuclear genome of rice.
When the intron sequences are removed from these copies and the translated protein
sequences compared to that of the ATPase-β peptide from the chloroplast (NP_039390) as well
as the mitochondrial ATPase-β (BAA01372) they show a high degree of homology with the
mitochondrial peptide (Figure 3.10), and to a lesser degree with the chloroplast peptide.
35
Figure 3.10: Alignment of the translated coding sequences of the two nuclear ATPase-β copies
in rice (Rice1 and Rice5) and the rice mitochondrial copy (Mt).
3.1.8
Co-alignments between the chloroplast and mitochondria
Co-alignment of the chloroplast and mitochondrion accounts for some of the homology in the
nuclear genome; 8997 bp of the rice chloroplast genome align to 17168 bp in the rice
mitochondrial genome, corresponding mainly to the ATP synthase B and E subunits as well as
to NADH dehydrodgenase subunits 1, 2 and 5. This accounts for 64453 bp of shared homology
in the rice nuclear genome. Table A-3 (Appendix, pp 265-269) shows the exact positions of
36
these co-alignments in the rice nuclear genome. Figure 3.9 gives a summary of the chloroplast,
mitochondrial and shared homology on each chromosome.
Figure 3.11: Mitochondrion, chloroplast and mitochondrion-chloroplast co-alignments on each
of the rice nuclear chromosomes.
3.1.9
Size distribution of insertions
Figure 3.12 shows the size distribution of the chloroplast and mitochondrial insertions. In the
filtered data set, using only alignments longer than 100 bp with a homology of 95% and greater,
for both the chloroplast as well as the mitochondria the majority of fragments were between 100
- 200 bp in size with a steady decline in the number of fragments with an increase in fragment
length.
37
Insertion Length Distribution
Number of Insertions
1200
1085
1000
800
723
Chloroplast
600
Mitocondrial
400
142
94
200
62 62
59 43
11001599
16002099
26 9
21 6
22 13
17 17
21002599
26003099
31003599
3600 +
0
100-599
6001099
Insertion Lengths
Figure 3.12: Size distribution of plastid insertions in the nuclear genome. The number of
insertions in each increment is indicated on top of each bar.
3.2 Viral Comparison
Comparisons between the genomes of several rice- and grass related viruses resulted in the
identification of a variety of fragments in the rice genome with distant homology to viral
sequences. Figure 3.13 shows the position of the different fragments mapped on the rice
karyotype. The largest number of fragments was found in the comparison between the rice
genome and the Rice tungro bacilliform virus (RTBV). Previous reports on RTBV-like sequences
in the rice genome identified 29 fragments (with a total length of 225 719 bp) (Kunii et al., 2004).
In this study we identified 409 fragments between 100 and 2443 bps (with a total length of 280
912) with 56 to 71% identity covering most of the RTBV genome (Table B-1, Appendix pp 270284). Some of the RTBV fragments are represented up to 40 times. Fragments of the RTBV
virus in the rice genome include a 844 bp sequence on chromosome 11 (26839202-26839983)
corresponding to TIGR Locus LOC_Os11g45180.1 which is a putative disease resistance
peptide. There is also a 2436 bp fragment (8: 11221697-11223971) that falls within TIGR Locus
LOC_Os08g18820.1 (novel transcript, zinc knuckle family protein). This fragment forms part of
the last intron and half of the last exon of this gene in rice. Using the complete gene sequence
to do a blastn search identifies the sequence in the Oryza sativa Japonica, Indica and
38
Nipponbare groups as well as in the RTB virus. A translated search (blastx) of this sequence
identifies it as a hypothetical protein from RTBV (FAA00012.1) (e=0.0). A third fragment of 2322
bp (8: 11161887-11164077) that falls within TIRG Locus LOC_Os08g18220.1 is annotated as a
putative unclassified retrotransposon protein. Using blastn to search the complete gene
sequence gives results in Oryza sativa Japonica and Indica as well as in the RTB virus and
blastx searches identifies the rice gene as a hypothetical protein from RTBV (FAA00009.1)
(e=0.0). Using the complete genome of the RTB virus in a blastn search on the NCBI nonredundant database, the top 174 hits include only RTBV (0.0), Vitis vinifera (792 bp, 65%, 8e25), Oryza sativa Japonica (6e-14) and Tobacco vein-clearing virus (248 bp, 69%, 3e-10).
Fifty-one additional fragments with sequence similarities between the rice genome and 5 RNA
viruses were also found that has not yet been reported in the literature (Table B-2, Appendix pp
285-286). These included the Oryza rufipogon endornavirus (ORE) (NC_007649), Oryza sativa
endornavirus (OSE) (NC_007647), Rice black streaked dwarf virus (RBSDV) (segment 4,
NC_003735), Rice grassy stunt virus (RGSV) (segment 3, NC_002325 and segment 6,
NC_002328) and the Rice stripe virus (RSV) (RNA4, NC_003753) were also found to have
similarities to the rice genome. These fragments of similarity ranged between 167 to 1800 bp in
length, with an average size of 460 bp and were unevenly spread among the viruses.
Fragments from the Rice grassy stunt virus fragment 3 include a 1800 bp fragment on
chromosome 6 (6644000-6645675) that does not fall within any expressed portion of the rice
genome as well as a 350 bp fragment on chromosome 2 (21462026-21462352) that is also in a
‘non-functional’ portion of the rice genome and that can only be identified in Oryza sativa
Japonica using a blast search in the plant database of NCBI. A 550 bp fragment with sequence
similarity to Oryza sativa endornavirus is found within the intron of a putative potassium
transporter 1 (2:18870105-18870616) in the rice genome. Using this fragment to search the
plant database on NCBI only identifies this sequence fragment in Oryza sativa Japonica. There
is also a 1034 bp fragment with similarity to Oryza rufipogon endornavirus in a non-genic region
of chromosome 12 (13977633-13978583) that is also only found within Oryza sativa Japonica.
A genome comparison were also done between the rice genome and 8 other monocot-related
viral genomes (4 ssDNA and 4 ssRNA) namely the Wheat dwarf virus (NC_003326); Maize
streak virus (NC_001346); Sugarcane streak virus (NC_003744); Panicum streak virus
(NC_001647); Wheat streak mosaic virus (NC_001886); Wheat eqlid mosaic virus
(NC_009805); Sorghum mosaic virus (NC_004035) and the Maize dwarf mosaic virus
39
(NC_003377). Even with low stringency parameters no significant sequence similarities were
found between these genomes and the rice genome
Figure 3.13: Positions of the viral homologies in rice. Oryza rufipogon endornavirus (blue left
hand arrow); Oryza sativa endornavirus (green right hand arrows); Rice black streaked dwarf
virus (brown left hand arrows); Rice stripe virus (yellow right hand arrows); Rice grassy stunt
virus (red filled box) and RTBV (blue filled box).
40
3.3 Bacterial comparison
3.3.1
Bacillus sequence similarities in the rice nuclear genome
Comparisons between the genomes of Bacillus cereus and that of rice resulted in the
identification of a great number of regions with sequence similarity. Limiting the results only to
fragments 100 bp or longer with an e-value equal smaller than 10-20 resulted in 74 fragments
totaling 12123 bp. The positions of these fragments are shown in figure 3.14.
Figure 3.14: Distribution of Bacillus cereus alignments on the rice karyotype.
The majority of alignments represent repeats in the Bacillus aligning to the same position in the
rice genome. The figure of 12123 bp counted regions in rice regardless of the number of
alignments in the Bacillus genome. Table C-1 (Appendix, pp 287- 306) shows the alignments
found in rice.
41
Taking the results found with Xanthomonas and Pseudomonas, discussed below into account,
and eliminating cross-alignments between these and Bacillus, 39 of the 74 fragments totaling
6139 bp were unique between Bacillus and rice.
All but one of the alignments between the Bacillus genome and the rice genome were within the
23S and 16S rRNA subunits of Bacillus and the chloroplast subunits located in the nuclear
genome of rice. The cross-homology between the Bacillus, Xanthomonas and Pseudomonas
alignments also occurred in this regions. Comparing the 23S subunits of the three bacteria and
the chloroplast subunit found a higher degree of homology between the rice chloroplast and
Bacillus 23S subunits that between Bacillus and Xanthomonas or Pseudomonas. The one
fragment found exclusively between Bacillus and rice genome (excluding the rRNA fragments),
which also had the highest similarity of the fragments identified between rice and Bacillus (0.0)
was a fragment of 770 bp (3:1817627-1818395) in rice showed 100% (0.0e) sequence similarity
with part of the HD domain protein from Bacillus (AE017194.1). This region is within the known
gene in the rice genome TB2_DP1_HVA22; TB2/DP1, HVA22 family. This family includes
members from a wide variety of eukaryotes. It is interesting to note that the similarity with this
fragment starts in an intron, includes 2 exons and then terminates in a longer intron. Using
Blastn on the NCBI website the two top results (100%) is in rice and Bacillus followed by
alignments 99% and less in various organisms, including Arabidopsis thaliana. Limiting the
results just to plants using the NCBI database the only two plants with significant sequence
similarities are rice and Arabidopsis, but with 8 different annotations in Arabidopsis. Using the
Gramene database, no results are found with Arabidopsis but 5 fragments varying between 656
to 143 bp are found within the maize genome, not shown in searches using the NCBI database.
Using Blastx the translated protein sequence gave significant matches in various bacteria,
limiting the search to eukaryotes resulted in only one hit (AAN17394.1, 7e-88) in Oryza sativa cv.
japonica annotated as putative InsB from Escherichia coli.
Various other alignments with different regions in the rice genome not related to the rRNA
subunits were also found with the initial alignments but were either less than 100 bp long or had
e-values lower than e-20.
42
3.3.2
Xanthomonas sequence similarities in the rice nuclear genome
Comparisons between the genomes of Xanthomonas oryzae pv. oryzae and that of rice resulted
in the identification of 37 homologous regions 100 bp or longer with an e-value equal smaller
than 10-20 totaling 5673 bp. The positions of these fragments are shown in figure 3.15. As with
the Bacillus alignments most alignments represented repeats in the bacterial genome aligning to
the same positions in the rice genome, once again the figure of 5673 bp counted regions in rice
regardless of the number of alignments in the Xanthomonas genome. Table C-2 (Appendix, pp
307-309) shows all the alignments found in rice. Accounting for cross-alignments with the other
two bacterial genomes tested, 5 of the 37 fragments totaling 698 bp were unique alignments
between Xanthomonas and rice. Cross-alignments between Bacillus and Xanthomonas all
occurred in the 16 and 23S sequences, which are discussed above under the Bacillus results.
Figure 3.15: Distribution of Xanthomonas alignments on the rice karyotype.
43
Sequences unique to Xanthomonas include a 145 bp fragment (AE013598.1) in Xanthomonas
that aligned to chromosome 1: 21872692-21872833 in rice (1.4e-33) that is part of the
carbamoyl-phosphate synthase large subunit in Xanthomonas; a 147 bp fragment (AE013598.1;
elongation factor Tu) aligning to 2: 23057548 – 23057691 in rice (2.3e-32); and 3 alignments with
the molecular chaperone DnaK (AP008229.1) of 162 bp (5:17472623-17472780; 6.4e-22), a 101
bp fragment (5:20846967-20847064; 4.5e-23) and a 143 bp fragment (8:5640788-5640925; 1.6e22
). Using the 100 bp fragments on each side of the of the 3 alignments resulted in hits only in
rice with the first two sequences but using the fragment from chromosome 8 plus 100 bp
flanking on each side (8: 5640688 – 5641025), resulted in significant alignments in Scherffelia
dubia (AJ312020.1|SDU312020; 5.0e-34) partial mRNA for luminal binding protein, Triticum
aestivum
(AF005993;
2.0e-30)
70
kDa
heat
shock
protein,
Lilium
longiflorum
(D21824.1|LILLIM18; 8.0e-30) as well as Sorghum bicolor (AY503363.1; 7.0e-27). The best
alignment with this extended fragment other than rice was with the fungal Blastocladiella
emersonii heat shock protein (hsp70) gene (L22497.1|BSIAHSP70X; 2e-58).
The only other sequence similarities found between Xanthomonas and rice of were 3 fragments
of which 2 were also shared with Pseudomonas that are annotated as the glycine
dehydrogenase gene in the bacterial genomes, aligning to these 3 positions in rice respectively
1:29540592-29540764 (177 bp; 5.7e-37) (1:29540592-29540767; 181 bp; 3.8e-26 with
Pseudomonas); 6:24360517-24360642 (128 bp; 1.3e-26) (6:24360464-24360643; 185 bp; 5.9e-31
with Psuedomonas) and 8:9239422-9239630 (217 bp; 1.5e-52).
3.3.3
Pseudomonas sequence similarities in the rice nuclear genome
Comparisons between the genomes of Pseudomonas syringae pv. syringae and that of rice
resulted in the identification of 33 fragments with significant sequence similarity 100 bp or longer
with an e-value equal smaller than 10-20 totaling 6332 bp. The positions of these fragments are
shown in figure 3.16. As discussed in the results above there was substantial cross-homology
between the bacterial sequences that aligned with the rice genome. Excluding these the
Pseudomonas genome had 655 bp of unique similarity with that of the rice genome. This 655 is
made up of three fragments of the 23S gene a 156 bp fragment on chromosome 2 in rice (2:
815417 – 815567; 6.2e-40) and a smaller piece of the same fragment on chromosome 11 (11:
13074159 – 13074260; 9.0 e-21).
44
A 128 bp fragment (CP000075.1) that is part of the Pseudomonas catalase gene with 87% (7e60) sequence similarity to rice (3:1767897-1768024). The region in the rice genome containing
this fragment falls close to the end of the TIGR Locus LOC_Os03g03910 catalase-1 (86 bases
past the end of the gene) and prior to the TIGR Locus LOC_Os03g03920 ubiquilin-1 gene.
However, when the rice catalase gene was used in Blastx against the Pseudomonas genome
sequence a region of 374 amino acids (Identities = 201/374, Positives = 260/374) with an e
value of e-115 was identified. When the rice catalase gene is used in a Blastn against the nr
database, then the first non-plant homology that is identified is the Pseudomonas catalase gene
fragment. In fact the Pseudomonas similarity is greater than that for Arabisopsis.
Table C-3 (Appendix, pp 310 - 313) shows the detailed search results.
.
Figure 3.16: Distribution of Pseudomonas alignments on the rice karyotype.
45
3.4 Fungal Comparison
3.4.1
Magnaporthe sequence similarities in the rice nuclear genome
Comparisons between the genomes of Magnaporthe grisea and that of rice resulted in the
identification of 46 fragments (totaling 8274 bp) in the Magnaporthe genome and 144 fragments
(totaling 25033 bp) of in the rice genome of 100 bp and longer that share significant sequence
similarity, with e-values equal smaller than 10-20. Figure 3.17 show the position of these regions
on the rice karyotype. Table D-1 (Appendix, pp 314 - 320) shows al the rests of the comparison
between rice and Magnaporthe that were 100 bp and longer, including repeats that were
subsequently removed in further analysis.
Figure 3.17: Distribution of Magnaporthe grisea alignments on the rice karyotype.
There were no co-alignments between the Magnaporthe genome and any of the nuclear plastid
sequences or with the bacteria and viral sequences. Ninety one percent of the
of the
alignments were between conserved regions of genic sequences such as beta-tubulin and
polyubiquitin while nine percent were either in unknown or Magnaporthe related sequences.
When the rice sequences identified as similar were used in the reverse blast, these similarities
were greatest between rice or monocots and Magnaporthe, but there was also wide homology
46
across different fungi and plants. Some insertions showed significant sequence similarity only to
Magnaporthe grisea such as the 131 bp insertion on chromosome 5 (5775966 - 5776097) to
locus XM_370434.1 of Magnaporthe grisea (9e-27; 87% identical without gaps), this falls within
the TIGR Locus LOC_Os05g10630.1 (putative O-sialoglycoprotein endopeptidase). Another
such fragment was a 109 bp sequence on chromosome 4 (23876766-23876857) to locus
XM_365128.1 (9e-11; 83% identical without any gaps) although the latter of these was eliminated
from the final statistics of similarity due to the high e-value. Another fragment on rice
chromosome 6: 4668751-4669004 shows significant sequence similarity only in maize
(AY104186.1; 8e-63) and the fungus Coprinopsis cinerea okayama (XM_001833442.1; 4e-31).
In rice this forms part of TIGR Locus LOC_Os06g09290.1 (putative 26S protease regulatory
subunit 7).
Multiple sequence alignments using the best fungal and plant related alignments found in Blastn
searches on the NCBI database showed three patterns in the sequence dendogram trees as
described below.
3.4.2
Dendogram type 1:
This sets of sequences group the fungal sequences together and the plant sequences together.
In figures 3.18 and 3.19 Magnaporthe grisea groups closest to the plants from the set of fungal
sequences used, while in figure 3.20 Blastocladiella emersonii is the closest grouping fungi.
47
Figure 3.18: Sequence dendogram from a multiple sequence alignment with the rice fragment
3:4074435:4074559 compared to Hordeum vulgare (emb|Z50789.1|HVEF1ALFA); Triticum
aestivum (gb|M90077.1|WHTTEF1X); Zea mays (gb|BT016514.1); Saccharum officinarum
(gb|AF281361.1); Suaeda japonica (dbj|AB073630.1); Arabidopsis thaliana (ref|NM_125432.3);
Cucumis sativus (gb|EF446145.1); Scolecobasidium humicola (gb|DQ307355.1); Magnaporthe
grisea (ref|XM_361098.1); Stachybotrys chlorohalonata (gb|AY180269.1); Lichinella iodopulchra
(gb|DQ832327.1); Pleopsidium chlorophanum (gb|DQ782920.1) and Diploschistes ocellatus
(gb|DQ366251.1). Green blocks indicate the plant sequences.
48
Figure 3.19: Sequence dendogram from a multiple sequence alignment with the rice fragment
10:65974:66122 compared to Triticum aestivum (gb|DQ150097.1); Zea mays (gb|AY106100.1);
Phaseolus vulgaris (gb|AY007525.1); Glycine max (gb|DQ139265.1); Nicotiana tabacum
(gb|AY532656.1); Brassica rapa (gb|AC189362.1); Medicago truncatula (gb|AC145022.29);
Arabidopsis thaliana (ref|NM_129380.2); Magnaporthe grisea (ref|XM_369484.1); Aspergillus
terreus (ref|XM_001216938.1); Gibberella zeae (ref|XM_385211.1); Neosartorya fischeri
(ref|XM_001259876.1);
Yarrowia
lipolytica
(ref|XM_502217.1);
Ustilago
maydis(ref|XM_754878.1); Coccidioides immitis (ref|XM_001242284.1) and Ashbya gossypii
(gb|AE016815.3). Green blocks indicate the plant sequences.
49
Figure 3.20: Sequence dendogram from a multiple sequence alignment with the rice fragment
3:11502555 - 11502670 compared to Triticum aestivum (gb|U49105.1|TAU49105); Hordeum
vulgare (gb|DQ995512.1); Zea mays (gb|BT017909.1); Orchidantha sp. (gb|AF430094.1);
Arabidopsis thaliana (ref|NM_123137.3); Lilium longiflorum (emb|Z12839.1|LLCALMOD);
Aspergillus
terreus
(ref|XM_001210822.1);
Blastocladiella
emersonii
(gb|AF264065.1);
Phaeoacremonium australiense (gb|AY579280.1); Davidiella tassiana (gb|DQ289831.1);
Penicillium roseopurpureum (gb|AY678541.1); Gibberella zeae (ref|XM_382067.1) and
Magnaporthe grisea (ref|XM_370387.2). Green blocks indicate the plant sequences.
5.3.3
Dendogram type 2:
In this set of dendograms rice sequences group with the fungal sequences. In figures 3.21 and
3.22 the rice sequence group with the fungal sequences and closest to the Magnaporthe
sequence. In Figure 3.23 Rice as well as maize group with the fungi based on sequence
similarity, while the grass species Setaria italica group with the other plant sequences used in
the alignment. In figure 3.24 the sequence from rice japonica cultivar groups with that of the
other plants while the sequence from the indica cultivar group closer to Magnaporthe and the
other fungi.
50
Figure 3.21: Sequence dendogram showing the relationship between a DNA fragment from a
multiple sequence alignment with the rice fragment 6:4668751 – 4669004 compared to
Arabidopsis
thaliana (ref|NM_104252.2);
Zea
mays
(gb|AY104186.1);
Pisum sativum
(gb|AY623108.1); Lactuca sativa (gb|AY243359.1); Prunus persica (gb|AF041258.1 AF041258);
Lupinus albus (gb|DQ118122.1); Spinacia oleracea (dbj|D86121.1|SPI26SPAS); Medicago
truncatula (gb|AC135796.25); Aspergillus fumigates (ref|XM_749738.1); Neosartorya fischeri
(ref|XM_001263659.1);
(ref|XM_380735.1);
Cryptococcus
Magnaporthe
neoformans
grisea
(gb|AE017347.1);
(ref|XM_363655.1);
Gibberella
Chaetomium
zeae
globosum
(ref|XM_001220658.1); Ustilago maydis (ref|XM_751676). Green blocks indicate the plant
sequences.
51
Figure 3.22: Sequence dendogram showing the relationship between DNA fragments from a
multiple sequence alignment with the rice fragment 8: 5640822 – 5640946 compared to Triticum
aestivum (gb|AF005993.1|AF005993); Zea mays (gb|U58209.1|ZMU58209); Hordeum vulgare
(gb|L32165.1|BLYHSPHAA); Lilium longiflorum (dbj|D21824.1|LILLIM18); Sorghum bicolour
(gb|U41653.1|SBU41653);
Nicotiana
tabacum
(gb|AY372070.1);
Arabidopsis
thaliana
(ref|NM_180788.2); (gb|L22497.1); Chaetomium globosum (ref|XM_001227132.1); Aspergillus
kawachii (gb|AF183893.1); Yarrowia lipolytica (ref|XM_503913.1) and Magnaporthe grisea
(ref|XM_361717.1). Green blocks indicate the plant sequences.
52
Figure 3.23: Sequence dendogram showing the relationship between DNA fragments from a
multiple sequence alignment with the rice fragment 6: 5884317:5884417; Zea mays
(gb|AY921640.1); Setaria italica (gb|DQ393721.1); Brassica rapa (gb|AC189331.1); Vitis
vinifera (emb|AM437355.2); Arabidopsis thaliana (emb|BX816218.1|CNS0ABRK); Magnaporthe
grisea
(ref|XM_362751.2);
Aspergillus
terreus
(ref|XM_001217694.1);
Cryptococcus
neoformans (ref|XM_572706.1); Chaetomium globosum (ref|XM_001223430.1); Neurospora
crassa (ref|XM_959546.1) and Yarrowia lipolytica (emb|CR382127.1). Green blocks indicate the
plant sequences.
53
Figure 3.24: Sequence dendogram showing the relationship between DNA fragments from a
multiple sequence alignment with the rice fragment 2: 3341370: 3342015; Oryza sativa indica
cultivar-group (emb|CT837820.1|); Sporobolus stapfianus (gb|AF148448.1|AF148448); Zea
mays (gb|BT016652.1); Saccharum hybrid (gb|L41658.1|SCFPOLY); Ananas comosus
(gb|AY098526.1); Ustilago maydis (ref|XM_753127.1); Glycine max (dbj|D16248.1|SOYUBI);
Magnaporthe grisea (ref|XM_363356.1); Aspergillus niger (ref|XM_001401978.1); Gibberella
zeae
(ref|XM_388944.1);
Yarrowia
lipolytica
(ref|XM_504128.1);
Botrytis
cinerea
(emb|AL114489.1|CNS01BOH) and Saccharomyces cerevisiae (emb|X05731.1). Green blocks
indicate the plant sequences.
5.3.4
Dendogram type 3:
This set of dendograms is characterized by the fact that there seems to be no or little
evolutionary order present in the grouping of the species using these sequences. In figure 3.25
rice and Magnaporthe group closer than rice and sorghum or maize which groups with the fungi
Chaetomium globosum. The other cerials wheat and barley group separately while Arabidopsis,
grape vine and cotton group with the fungi Aspergillus terreus and Ustilago maydis. In Figure
3.26 the fungi Blastocladiella emersonii interrupts the plant sequences while Nicotiana and
Brassica interrupts the fungal sequences.
54
Figure 3.25: Sequence dendogram showing the relationship between DNA fragments from a
multiple sequence alignment with the rice fragment 4: 23876766:23876875; Sorghum bicolor
(gb|AY372819.1); Zea mays (gb|AY366085.1); Arabidopsis thaliana (ref|NM_116413.1); Vitis
vinifera (emb|AM472754.2); Triticum monococcum (gb|AF459639.1); Gossypium hirsutum
(gb|AF216497.1);
Hordeum
vulgare
(dbj|AB063580.1);
Magnaporthe
grisea
(ref|XM_001413121.1); Chaetomium globosum (ref|XM_001224928.1); Aspergillus terreus
(ref|XM_001216110.1) and Ustilago maydis (ref| XM_757063.1). Green blocks indicate the plant
sequences.
55
Figure 3.26: Sequence dendogram showing the relationship between DNA fragments from a
multiple sequence alignment with the rice fragment 1: 36368256: 36368446; Sorghum bicolor
(gb|U41653.1|SBU41653); Zea mays (gb|BT016692.1); Triticum aestivum (gb|AF005993.1);
Lilium longiflorum (dbj|D21824.1|LILLIM18); Brassica rapa subsp. pekinensis (gb|AC189429.1);
Nicotiana tabacum (gb|AY372070.1); Blastocladiella emersonii (gb|L22497.1); Neurospora
crassa
(emb|BX284745.1);
(ref|XM_503148.1);
Hypocrea
Rhizophlyctis
(ref|XM_001225917.1);
Ustilago
jecorina
rosea
maydis
(gb|AY281746.1);
(gb|AY582832.1);
(ref|XM_754845.1)
Yarrowia
Chaetomium
and
lipolytica
globosum
Magnaporthe
grisea
(ref|XM_370461.2). Green blocks indicate the plant sequences.
56
4
Discussion
57
4.1 Motivation for this study
Two sets of results obtained within our research group prompted this study. The first was an
observation that when using representational difference analysis (RDA) to compare highly
similar genomes for DNA differences between them, chloroplast fragments, especially the
ribosomal subunits, located in the nuclear genome were isolated as RDA products from various
plant species. These results indicated that the chloroplast insertions in the nuclear genome
were highly variable within different plants of the same species or cultivar and even between
different individual plants obtained from the same tissue culture process. It was therefore
decided to do a detailed analysis of the plastid insertions in the nuclear genome to better
understand the dynamics of nuclear located plastid insertions. The second observation was the
isolation of a 215 bp sequence from tobacco with high similarity to a Bacillus cereus sequence.
Subsequent analysis identified similar fragments within the genome of the grass Monocymbium
ceressiiforme as well as white clover, Trifolium repens. Submitted manuscripts incorporating
these results have been met with criticism that the fragments were most likely artifacts of DNA
contamination rather than genuine differences between the genomes being compared. It was
therefore decided to asses the rice nuclear genome for the presence of all sequences similar to
any part of the completely sequenced microbes with which rice was likely to have been in
intimate contact, rather than just focusing on genes.
4.2 Discussion of techniques and results
4.2.1
Search techniques and parameters
The first objective of this study was to establish and refine the techniques and parameters used
with which these comparisons were done by comparing these results to existing reports of
chloroplast insertions in the rice genome.
In this study the raw alignment data for the chloroplast shows a combined length of homology of
over 1 Kb in the nuclear geome, this however include a number of repeats. Eliminating all the
repeats as well as fragments shorter than 100 bp and with homology of less than 95% or Evalues larger than 10-20 the combined length was 0.78 Kb. This is less than the 0.9 Kb obtained
by Matsuo et al., (2005) but since they used E-values of <10–10 with unspecified homology, with
58
the higher stringency used in this study this is to be expected. The reason for the higher
stringency was to distinguish between fragments from possible mitochondrial or chloroplast
origin, as well as to eliminate older smaller and older fragments. This was achieved when
looking at the small amount of co-alignment shown in figure 3.11.
Overall the search results indicate that the methods and parameters used to do the homology
analysis was effective and could be used for the further analysis of viral, bacterial and fungal
insertions.
4.2.2
DNA homology between the plastid genomes and the rice nuclear genome
This study confirmed the presence of large amounts of plastid DNA in the nuclear genome of
rice. While other studies have reported on the nuclear location of plastid DNA in various
eukaryotic species, it was mostly reports of specific fragments or more general findings. Matsuo
et al., 2005 was the first to publish a genome wide analysis of chloroplast insertions. This study
provides the first comparative analysis of both the chloroplast and mitochondrial genome
insertions in the nuclear genome of any plant species. It is then interesting to find that there is a
marked difference in the representation of these two plastids in the nuclear genome of rice. This
leads to a hypothesis that firstly the process of transfer and insertion or secondly that the
process of elimination of the inserted fragments differs between the chloroplast and
mitochondria.
To examine the hypothesis that there is a possible difference in the transfer and insertion of the
chloroplast and mitochondria to the nuclear genome and rice, one has to consider studies on
transfer rates. Recently, two research groups experimentally detected plastid–nuclear DNA
transfer in tobacco, with an apparent transfer rate of a marker gene of 1 per 16,000 pollen
grains (Huang et al., 2003) or 1 per 5 million leaf cells (Stegemann et al., 2003). Interestingly,
the number of cells in a mature tobacco leaf (Possingham, 1980) is at least 10 times higher than
the average number of leaf cells required to select one chloroplast gene transfer event, which
indicates that cells within a single leaf are not genetically identical but may differ in their nuclear
genome with respect to the pattern of chloroplast DNA integrations. Taking this transfer rate into
account, a given gene locus on the tobacco plastid genome is expected to translocate to the
nucleus 63 x 10-6 times per plant generation or 0.2x10-6 times per somatic cell division. Matsuo
59
et al., (2005) estimate that a given gene locus of the rice chloroplast genome should have
transferred to the nucleus at least 4 x10-6 times per plant generation. Rice fields generally
produce 100 to 300 x106 grains/hectare. Therefore, in a rice field of 1 hectare, there may be
hundreds of grains in which a given gene of the chloroplast genome has newly transferred to
the nucleus. The occurrence of grains in which the nuclear genome had newly integrated any
part of the chloroplast genome would be far higher. The rate of transfer for mitochondrial DNA
was determined in yeast by Thorsness and Fox (1990) and was similar to the rates of
chloroplast DNA transfer in tobacco leaf cells found by Stegemann et al., (2003) at
2 x 10–5
per cell per generation.
While the total length of insertions for both the chloroplast and mitochondria were similar in this
study (1070 fragments totaling 779 Kb for the chloroplast and 1329 fragments totaling 614 Kb)
their genomes show a remarkable difference in the way they are represented in the nuclear
genome (see figures 3.2 and 3.6), with the chloroplast genome represented on average
approximately 5.8 times and that of the mitochondria is only represented on average less than
2.1 times. While most of the chloroplast genome is present to some extent, only parts of the
mitochondrial genome are present in the nuclear genome, most of the areas of the
mitochondrial genome present in high frequencies are the NADH subunits that also account for
most of the shared homology with the chloroplast. To differentiate between NADH copies from
the chloroplast and the mitochondrion, fragments were assigned to one or the other by
identification of the flanking sequences as either chloroplast of mitochondrial. Two copies of the
ATPase β-subunit were found in the nuclear genome. The first is located between two
mitochondrial insertions while the second is located well outside of any plastid DNA insertions,
(see figure 3.9). One of the distinguishing features of these two copies is eight intron-like
sequences that interrupt the coding sequence compared to the chloroplast copies. While there
are TATA promoter-like motives in the 5’ sequence of these copies no data is available on
whether they are indeed expressed. In literature the function ATPase β-subunit has not been
shown to have been transferred to the nucleus though these results would seem to indicate that
it might be in the process of being transferred.
It has been shown that while plastid DNA is frequently transferred to the nucleus, it is also
rapidly eliminated (Matsuo et al., 2005). If the insertion rates are indeed similar for chloroplasts
and mitochondria in rice as well, then there must be some system operating in the nucleus that
preferentially eliminate mitochondrial DNA from the nucleus. Unfortunately there is no evidence
60
available to support this hypothesis. Comparing the two different representation profiles, that of
the chloroplast have a high base representation with a few areas that are represented at a much
higher frequency while that of the mitochondria show only a few areas that are highly
represented. Assuming that the base in the chloroplast representation is the result of younger
insertions that has not yet been through the process of elimination and the areas that are highly
represented are the remains of older insertions, similar to the mitochondrial profile. If the
chloroplast and Mitochondrial DNA is eliminated at the same rate, then a higher insertion rate of
the chloroplast might explain this difference in representation observed.
Taking into account that the rates were estimated in tobacco leaf cells for tobacco and yeast
cells for the mitochondria, we should consider that in plants only fragments transferred in the
gametophytic cells would stand a chance of being transferred to the next generation, after which
it could be incorporated into the general population over time. Therefore what happens in the
somatic cells does not necessarily reflect the situation in the gametophytic cells. And unless
these somatic cells are involved in vegetatively propagated structures, these insertions will be
lost. There is no research available to support a hypothesis for a different transfer rate in
gemetophytic cells, we might speculate about this from other data. It has been proposed by
Richly and Leister, (2004) that because extranuclear DNA is usually maternally inherited in
flowering plants. We also know from observations in tobacco by Yu and Russell (1993) that
while the chloroplast content decreased to an average of 0.48 plastids/generative cell
mitochondria were present in larger numbers at approximately 80 mitochondria per generative
cell. Thus if we assume a similar situation in rice, coupled with the hypothesis of Richly and
Leister that organelle-to-nucleus transfer of DNA should preferentially occur during the
degradation of plastids during pollen formation, the higher decrease of chloroplast should result
in a larger amount of free chloroplast DNA in the cell available for transfer to the nucleus.
Although this cannot be proven in this study, this would explain the higher abundance of
chloroplast DNA in the nucleus observed in this study.
Another contributing factor that might explain this difference is that if insertion happens mainly
as whole genome insertions as postulated by Matsuo et al., (2005). We know from studies on
transformation of Escherichia coli with plasmids by Hanahan (1983) that the transformation
efficiency declines linearly with increasing plasmid size. Therefore the smaller genome of the
rice chloroplast (130 Kb) would be more efficiently transferred and incorporated into the nucleus
than the much larger genome of the rice mitochondrion (490 Kb). Although Matsuo et al., (2005)
61
view the process of insertion to occur mainly through the insertion of whole genome fragments
or fairly large fragments with the subsequent deletion and fragmentation of these pieces, it is
also reasonable to consider that it might occur through multiple insertions of small fragments,
some of which might act like transposable elements. A fragment on chromosome 12 of the rice
genome shows a position where possible multiple independent insertions of chloroplast
fragments took place (see figure 3.4). These insertions are interspersed with short highly
repetitive T-rich DNA sequences.
The non-contiguous nature of the fragments seems to
indicate multiple independent insertions rather than insertion with subsequent deletion of parts
of the fragment.
It also appears that the insertions are not randomly distributed over the whole nuclear genome,
but rather that they tend to be concentrated in specific areas. There are at least three possible
explanations for this: (1) Insertions occur throughout the genome but some regions are “swept’
more effectively than others. (2) Some regions of the genome are more available/ receptive than
others to insertion events and therefore these regions have a higher number of insertions. (3)
Insertions in other areas are mostly deleterious or decrease the cells fitness to such an extent
that they are selected against.
Furthermore the size distribution of the insertions shows that the majority of fragments are
between 100 – 599 bps long. If we consider that most insertions occur as whole genomes of as
large pieces, this indicates that the insertions we are observing for both the chloroplast and
mitochondrion is fairly old and has been degraded significantly, but that they are efficiency with
which they are degraded decrease significantly once they reach this size class. Combined with
this, the insertion of fragments might also occur most efficiently for this size class.
4.2.3
Sequence similarities between the viral genomes and the rice nuclear genome
In this analysis we confirmed a previous report that the Rice tungro bacilliform virus (RTBV) is
integrated into the rice nuclear genome. Nagano et al., (2000) reported a highly variable region
on chromosome 6 with homology (54 – 59%) to RTBV that was also highly variable in copy
number between rice cultivars. Kunii et al., (2004) reported on 29 segments homologous to
RTBV. Previous studies focused on the characterization of specific fragments through PCR,
sequencing and Southern Blot Analysis rather than a whole genome comparison. Using this
62
approach this study identified additional fragments that have not yet been reported. Up to 40
copies of some regions of the Rice tungro bacilliform virus were found to be present in the rice
genome, indicating either multiple integrations or subsequent duplication of some regions. If
indeed the RTBV genome has been inserted more than 40 times over the course of time, it
would seem that it has been accompanied by extensive elimination. Even so most of the
genome is still represented in the rice nuclear genome at various copy levels. It is interesting
that we find similar fragments of RTBV only in one other plant species namely Vitis vinifera. We
could find no reports of RTBV infecting Vitis, but is seems likely that it does or that there is a as
yet unidentified/ un-sequenced counterpart of RTBV associated with Vitis.
Furthermore this study provides evidence of possible integration events between rice and five
different RNA viruses and the rice genome were also identified. Fifty-one fragments that show
similarity to rice related RNA viruses have been identified. The integration of RNA viruses into
the plant genome has not yet been reported (Harper et al., 2002), except for the finding that
grapevine genomic DNA carries the entire gene of a potyviral coat protein (CP) and the potyviral
3′UTR. Potyviral-homologous sequences were also found in tobacco DNA, albeit in a
rearranged form (Tanne and Sela, 2005). The sequence fragments identified in this study show
between 40 – 70% identity with the viral genome and range in length between 184 and 1800
bps. This variation in homology would seem to indicate different times of integration during the
evolution of the rice genome. Only fragments of the viral genomes are present. Since many of
the RNA viruses of rice have genomes containing several fragments rather than circular
genomes, partial integration would be more likely. With animal and bacterial retroviruses the
early steps of replication involve reverse transcription of the viral RNA genome to make a cDNA
copy followed by the integration of that cDNA copy into a chromosome of the host cell. The
integration reaction requires specific sequences at the ends of the viral cDNA, which bind the
viral-encoded integrase and other proteins to form pre-integration complexes (Schröder et al.,
2002). The infection cycle of plant viruses is not known to include an integration event, mainly
because integration of retrovial DNA is facilitaded by a virally encoded integrase (Patience et
al., 1997). Plant pararetroviruses generally lack the gene for this enzyme, and integration is not
required for virus replication (Jakowitsch et al., 1999), even so there are is evidence of the
integration of non-retroviral genomes into plant genomes (Tanne and Sela, 2005; Staginnus and
Richert-Pöggeler, 2006).
63
With the absence of an integrase enzyme the integration of viral sequences into the plant
genome must involve a recombination event. In the absence of viral sequence in the host
genome, recombination must be non-homologous (Jakowitsch et al., 1999). If there are already
viral sequences already present, the recombination could be homologous. It is still unknown if
the complete viral DNA genome itself integrates or whether integration occurs through
replication intermediates such as cDNAs. During replication, pararetrovirus genomes form
multiple copies of nuclear mini-chromosomes and gapped dsDNA replication intermediates, and
the ssDNA geminivirus genomes are replicated to high levels in the nucleus. Both modes of
replication provide potential recombinogenic sequences for integration, via illegitimate
recombination, in cells undergoing active genetic processes (Hull et al., 2000). Integrated
sequences of banana streak virus and RTBV integrated sequences suggest that the cDNAs can
integrate as well (Harper et al., 1999; Ndowora et al., 1999; Jakowitsch et al., 1999; Kunii et al.,
2004). It is however possible that a retroelement integrase function can be used in trans, as has
been suggested for SINE element integration from LINE element integrase (Eikbush, 1992). It
might also be plausible that RNA virus segments are integrated after the viral segments get
reverse-transcribed by reversetranscriptase used by other viruses in the cell.
It would seem likely that viral sequence integration can occur during every infection. However,
as most viruses do not infect meristematic tissues, the integrations are not usually fixed and are
lost on passage through seed. Furthermore cells and plants in which functional copies of the
integrated virus can readily excise, be transcribed or otherwise result in disease might not be
viable. Rapid rearrangement and/or deletion of viral sequences through recombination would
effectively disrupt the process. This is a possible reason for all reported cases of integration
involving rearrangement or deletions.
The possibility that viral DNA might insert regularly into plant genomes, has considerable
implications for plant genome evolution. Little is yet known about the contribution of integrated
viral sequences to plant genome organization, function and evolution. Similar to vertebrate
endogenous retroviruses (Patience et al., 1997), integrated pararetroviral DNA could act as
insertional mutagens; could contribute strong constitutive promoters to neighboring plant genes,
altering gene expression patterns; or they could accumulate to generate new repetitive
sequence families. As components of the genome, they can be altered, recombined and
amplified, providing another source of variation.
64
Overall this analysis presents the first comprehensive assessment of viral integration and
contribution to the rice nuclear genome.
4.4.4
Sequence similarities between the bacterial genomes and the rice nuclear genome
With the exception of Agrobacterium tumefaciens, transfer of DNA from bacteria to plants
remains a controversial subject. Recent research by Broothaerts et al. (2005) has shown that
several bacterial species outside the Agrobacterium genus, modified with a Ti-plasmid were
able to facilitate the transfer of foreign DNA to plants. We know that various eukaryotic genes
are of bacterial origin, presumably acquired during endosymbiosis and subsequent transfer of
DNA from the pre-chloroplast and pre-mitocondria (Timmis et al., 2004).
This analysis aimed to identify recent lateral DNA transfer events from bacterial genomes to that
of the rice genome. In the first whole genome comparison between a bacterium and rice, done
with the Bacillus subtilus genome, various sequences with a significant degree of similarity were
identified. On closer analysis of these sequences the similarity were found to be mostly between
the 16S and 23S rDNA genes of the chloroplast located in the nuclear genome of rice. This is
not a surprising observation since the chloroplasts are thought to have originated from
cyanobacteria (McFadden, 2001). When cross similarities between the bacteria especially within
the rRNA regions were eliminated as possible HGT events then the possible contributions from
the various organisms became more differentiated with a ten-fold greater amount of similarity
between rice and Bacillus than either of the other two bacterial species. These similarities are
unlikely to be simply due to chance events or more regions would have been expected to be
identified with the other organisms and/or regions of the microbial genomes.
The 770 bp fragment found exclusively between Bacillus and rice genome (excluding the rRNA
fragments), which also had the highest similarity of the fragments identified between rice and
Bacillus with sequence similarity with part of the HD domain protein from Bacillus. This region is
within the known gene in the rice genome. This gene family includes members from a wide
variety of eukaryotes. It is interesting to note that the similarity with this fragment starts in an
intron, includes 2 exons and then terminates in a longer intron. Using Blastn on the NCBI
website the two top results (100%) is in rice and Bacillus followed by alignments 99% and less
in various organisms, including Arabidopsis thaliana. This sequence seems to represent a good
65
candidate of a transfer event of DNA from bacteria to plants. The transfer could have occurred
before the split between monocots and angiosperms, thus its presence in Arabidopsis as well as
maize and rice. Its absence from other plants can be due to lack of sequence information, or
can point either to multiple transfer events or the loss of that sequences from these genomes.
The sequence similarities found between the rice genome and Pseudomonas included a
possible candidate for horizontal acquisition namely the 181 bp fragment (1:2954059229540767) that showed sequence similarity to a Glycine cleavage system P-protein from
Pseudomonas syringae. Since the fragment falls within an intergenic region of about 80,000bp
and is not part of a functional gene in rice the sequence similarity is unlikely to be as a result of
sequence conservation during the course of evolution. It is also possible that this might have
been part of a larger sequence fragment that has been degraded to its current form as is the
case for inserted fragments of the mitochondrion and chloroplast.
Xanthomonas might have been expected to have the highest number of similarities due to its
intimate association with rice. However, since Xanthomonas is a rice pathogen, the association
mostly results in the death of the infected cells. Further, the interaction occurs mostly on leaf
tissue not contributing to the formation of seeds. Therefore, any DNA transferred during the
interaction is unlikely to be incorporated in the progeny of the plant. In contrast, Bacillus has a
beneficial relationship with the plant by suppressing the growth of pathogens. This provides a
greater chance of stable integration of transferred DNA into the progeny and this expectation is
borne out by the higher degree of homology found between rice and Bacillus. The similarities
identified here are unlikely to be simply due to chance events or more regions would have been
expected to be identified with the other organisms and/or regions of the microbial genomes.
From literature as well as this study we can see that there are a lot of sequences in plants with
similarity to bacterial sequences that cannot be explained by conventional evolutionary theories,
and where horizontal gene transfer seems to offer the best explanation. Though it is assumed to
be rare events, the data for transfer of chloroplast and mitochondrial DNA to the nucleus
demonstrate that though it happens quite frequently in leaf tissue the actual incorporation into
the general plant population is much lower since only DNA incorporated into the nucleus of cells
that will give rise to progeny will stand a chance of being incorporated into the plant population.
A similar scenario will be true for horizontal transfer of bacterial DNA. While it might happen
much more often in stems and leaves we might never observe these. Another important factor
66
will be the specific association of the bacterium and the plant, since pathogens usually kill the
cells they invade or the cells are killed by a hypersensitive response in the plant to prevent
further infection, any transfer of DNA will be lost. Gene transfer between bacteria in a symbiotic
association with the plant such as Rhizobacteria in roots could be much higher but since roots
are seldom the progenitors of new offspring these transfers would not be transferred to
subsequent generations.
This analysis demonstrates that a whole genome comparative analysis can be useful in
identifying similarities between genomes that can be attributed to horizontal DNA transfer
events between unrelated genomes.
4.4.5
Sequence similarities between the Magnaporthe genome and the rice nuclear genome
The whole genome comparison between rice and Magnaporthe revealed 144 sequences, 100
bp or longer, with significant similarity in the rice genome. These sequence fragments are
spread over the rice genome (as shown in figure 3.17). Ninety one percent of the of the
alignments were between conserved regions of genic sequences such as beta-tubulin and
polyubiquitin while nine percent were either in unknown or Magnaporthe related sequences.
There were also a number of fragments identified as putative heat-shock proteins while other
fragments could not be identified. When the rice sequences identified as similar were used in
the reverse blast, these similarities were greatest between rice or monocots and Magnaporthe,
but there was also wide homology across different fungi and plants. The higher amount of
sequence similarity found between Magnaporthe and rice can be attributed to the higher
number of conserved genes between fungi and plants. However, a number of examples of DNA
sequences were found with the only significant homology being between rice and Magnaporthe
grisea, of either unknown function in both organisms or annotated only in Magnaporthe as
hypothetical proteins. Some insertions showed significant homology only to Magnaporthe grisea
such as the 131 bp insertion on chromosome 5 (5775966 - 5776097) to locus XM_370434.1 of
Magnaporthe grisea (9e-27; 87% identical without gaps), this falls within the TIGR Locus
LOC_Os05g10630.1 (putative O-sialoglycoprotein endopeptidase). Another such fragment was
a 109 bp sequence on chromosome 4 (23876766-23876857) to locus XM_365128.1 (9e-11; 83%
identical without any gaps) although the latter of these was eliminated from the final statistics of
similarity due to the high e-value. Another fragment on rice chromosome 6: 4668751-4669004
67
shows significant sequence similarity only in maize (AY104186.1; 8e-63) and the fungus
Coprinopsis cinerea okayama (XM_001833442.1; 4e-31). In rice this forms part of TIGR Locus
LOC_Os06g09290.1 (putative 26S protease regulatory subunit 7). This mitigates against
evolutionarily-related genes being the only source of these genomic similarities. The non-genic
conserved fragments are most likely to represent concrete examples of horizontally transferred
DNA between Magnaporthe and rice, but each would require in-depth analysis.
Analysis of the fragments to determine the relatedness between the rice and Magnaporthe
sequences were done by using similar fungal and plant sequences identified using Blastn
homology searches in the plant and fungal databases to do multiple sequence alignments and
draw sequence dendograms. Since these sequences are mostly less than a 1000 bp long a
significant phylogenetic analysis was not possible. Using these as guides some conclusions can
be drawn about the origin and relationships between the fragments found to be similar between
rice and Magnaporthe. The first set of dendograms (figures 3.18 - 20) would seem to indicate
conserved sequences inherited via a common ancestor since the plant and fungi group
separately. Magnaporthe is the closest grouping fungi to the plants which could be explained by
its close evolution with the cereals as a cereal pathogen.
The second set of dendograms (figures 3.21 – 5.24) supports horizontal DNA transfer events
between Magnaporthe and rice or a common ancestor of maize and rice (figure 3.23). The first
dendogram in this set (figure 3.21) represents a 253 bp sequence only identifiable as a
hypothetical protein in rice, but with similar sequences in different plants and fungi present. It is
clear however that the sequence from rice groups well away from the other plants with that of
the fungi as would be expected for a horizontal transferred sequence. The second dendogram
in this set (figure 3.24) represents a 124 bp hypothetical protein sequence from rice and the
dendogram again suggest a transfer event rather than homology via a common ancestor. In this
dendogram the fungus Blastocladiella emersonii group between the plants. It is thought that
Blastocladiella emersonii which is an aquatic fungus of the Chytridiomycete class, and lying at
the base of the fungal phylogenetic tree could have retained some ancestral characteristics of
fungi and animals or fungi and that were lost in members of late-diverging fungal species
(Ribichich et al., 2006). The third dendogram (figure 3.23) also represents a sequence that
could only be classified as a hypothetical protein in rice of 100 bp. The dendogram would again
support a transfer event from an early ancestor of Magnaporthe grisea, Aspergillus terreus and
68
Neurospora crassa to an early ancestor of both rice and maize. The fourth dendogram (figure
3.24) was constructed using a 645 bp sequence annotated as rub1 mRNA for polyubiquitin. This
dendogram also shows that the sequence from the indica cultivar group of rice groups with the
fungi and separate from the sequence in the japonica cultivar group, indicating a DNA transfer
event that took place after the two cultivars split an estimated 0.4 mya (Zhu and Ge, 2005).
The third set of dendograms support a hypothesis for multiple DNA transfer events between
plants and fungi. The firs dendogram (figure 3.25) that were drawn using a 109 bp fragment
identified as a hypothetical protein from Magnaporthe grisea, groups Magnaporthe and rice
together while sorghum and maize are grouped with the fungus Chaetomium globosum an
ascomycete found on grasses with known antifungal activity against the Magnaporthe grisea
and wheat leaf rust Puccinia recondita (Kim et al., 2005). The other two cereals wheat and
barley grouped separately. Cotton (Gossypium hirsutum) grouped with the fungus Ustilago
maydis as well as Arabidopsis and grape (Vitis vinifera). The second dendogram in this group
(figure 3.26) that was constructed using a 190 bp fragment identified as a putative heat shock
protein in rice, shows the cereal sequences group together while wheat (Triticum aestivum)
group closer to the fungus Blastocladiella emersonii than rice maize and sorghum. The rest of
the fungi follow interrupted by Lilium longiflorum, Brassica rapa subsp. pekinensis and tobacco
(Nicotiana tabacum); the only other plants in which a sequence of significant similarity could be
found.
This analysis shows that while some of the sequence similarities between the genome of rice
and that of Magnaporthe may originate as a result of a common ancestor there are some
sequences for which this similarity can only be explained by a transfer event from a fungi
(Magnaporthe grisea or related fungi) to the rice genome or that of an ancestor of rice and the
other cereals. The exact model of how transfer and integration is facilitated is still unclear but
illegitimate recombination is a likely explanation.
69
4.3 Insertion dynamics
This study clearly shows that there are sequence similarities in the rice genome with “non-plant”
sequences. For rice genome assembly 80% of the sequences were from paired (forward and
reverse) reads with an average clone size of ~1700 bp (18.5-fold genome coverage). More than
fivefold coverage was from randomly selected clones, with the remainder from resequencing
gaps or low-quality regions. The resulting sequences were analyzed for contamination from
non-rice DNA sources (~500,000 reads) or rice repetitive DNA (~1,500,000 reads) (Goff et al.,
2002). Since the fragments identified in this study are all relatively short (shorter than the BAC
reads ass well as the stringency with which the rice genome has been assembled and the fact
that these fragments are flanked by rice-related sequences; it is highly unlikely that they are
artifacts of contaminating microorganisms in the original DNA preparations.
Through the various analyses of the insertion sites, it is also clear that the insertion sites of
these sequences do not appear to be randomly distributed throughout the genome and has at
least three possible explanations:
i.
More transfer occurs but some regions are “swept’ more effectively than others due
to adverse consequences of exogenous DNA insertions.
ii. Some regions of the genome are more available/ receptive than others to insertion
events and therefore these regions have a higher number of insertions or,
iii. Insertions in other areas are mostly deleterious or decrease the cells fitness to such
an extent that they are directly selected against.
One view is that only genes that convey a certain benefit will be transferred between organisms
(Jain et al., 1999; Gogarten and Townsend, 2005) but it is unlikely that benefit could be the
determining factor in the actual transfer. Any benefit would rather affect the persistence of the
transferred DNA. Alternatively, the degradation and/or rearrangement of any inserted fragment
might itself possibly confer a benefit. Therefore it would be more accurate to state that certain
genes or regions have a better chance of surviving the mechanisms in the nucleus responsible
for degrading insertions and repetitive elements and therefore will be maintained and integrated
into the functioning of the organism by conferring a positive selection pressure. Another factor
that must be considered is that the position of insertion might play an equal or greater role than
its actual coding function, through the influence of the inserted fragment on the adjacent genes
and sequences and vice versa. It is also clear with the analysis of the organellar insertions that
70
not all regions of the organellar genomes are present in the nuclear genome at the same
frequency. This is especially true for the sequences of the 16S and 23S ribosomal subunits of
the chloroplast and the NADH subunits of the mitochondrion. Possible reasons for this are that
they either are preferentially inserted, or, more likely, because they are not removed at the
same rate as the other insertions. This might be because the genome has an evolutionary builtin mechanism to recognize and protect these essential gene sequences.
4.4 Models for DNA transfer
For the insertion of foreign DNA to take place, the DNA firstly has to enter the nucleus and
secondly need to be incorporated into the genome. For the mitochondrion and chloroplast the
only obstacle to cross would be the nuclear envelope. While for viruses, bacteria and fungi the
cell wall and cell membrane would present an initial and more robust barrier. In host-pathogen
interactions, the invading microorganism generally does not invent novel metabolic pathways;
instead it insinuates into the existing cellular processes and adapts them for its life cycle. Thus,
nuclear uptake of foreign DNA shus as the T-complex from Agrobacterium spp and viral
genomes probably follows one of the pathways for nuclear transport of cellular RNAs.
Transport of nucleic acids through cell membranes is a biological process basic to all living
organisms. Nucleic acid molecules are transported through membrane channels during hostpathogen interactions (e.g. transport of viral genomes into the host cell) as well as during
normal cellular processes (e.g. nuclear export/import of mRNA) (Citovsky and Zambryski,
1993). Molecular transport across the nuclear envelope involves many different proteins and
nucleic acids. This transport is bidirectional and occurs exclusively through the nuclear pore
complex (NPC), integrated into the two membranes of the nuclear envelope (Akey, 1992). In the
passive state, the NPC allows diffusion of small molecules (up to 40 kDa) (Akey, 1992), while
the transport of larger molecules occurs by an active mechanism mediated by specific nuclear
localization signal (NLS) sequences contained in the transported molecule (Garcia-Bustos et al.,
1991). The best studied case of nuclear import of DNA in plants is the Agrobacterium T-DNA
system. As discussed in the introduction Agrobacterium transforms plant cells through the Ti
plasmid. The Ti plasmid has two important genetic components. One, the T-DNA, is copied and
transferred to the plant cell and the second component of the Ti plasmid, the virulence (vir)
region, provides most of the trans-acting products for T-DNA transfer. In addition to functioning
71
in nuclear targeting, VirE2 acts as a single-stranded (ss) DNA binding protein (SSB) (Christie, et
al., 1988; Citovsky et al., 1988). The T-strand with a molecule of VirD2 covalently attached to its
5’-end likely exists as a folded and collapsed structure. Following cooperative binding of VirE2,
the ssDNA is unfolded to form a long and thin protein-ssDNA T-complex. The T-complex is
composed of three structural elements: one copy of the T-strand, one VirD2 molecule, and more
than 600 copies of VirE2 (Citovsky et al., 1988). The T-strand is not sequence specific, and any
DNA sequence located between the 25-bp T-DNA border repeats can be transported to plants
and function as T-DNA (Citovsky et al., 1992). Thus, the T-strand probably does not possess
specific nucleotide sequences for nuclear uptake; instead it likely is passively transported into
the nucleus by its associated proteins, leaving the other two components of the T-complex, the
VirD2 and VirE2 proteins, to function in nuclear transport (Citovsky and Zambryski, 1993). There
may be plant cellular proteins analogous to VirE2 that serve as molecular chaperones coating
and unfolding nucleic acids and targeting them to and through nuclear pores. If true, this could
explain observations that VirE2 function is not essential on some hosts (Stachel and Nester,
1986); in this case, one can argue that another plant-cell SSB can provide the VirE2-like
function. This idea supports the possibility that nuclear transport of Agrobacterium spp. Tcomplex may represent a generalized process by which ssDNA or RNA molecules move within
the cell; i.e. as unfolded nucleic acid--protein complex.
In plants, however, nucleic acids also can be transported between cells. Plant cells are
connected by cytoplasmic channels called plasmodesmata (PD) that allow the transfer of
nutrients and signals necessary for growth and development. Although plasmodesmata and
nuclear pores are structurally different, both are complex proteinaceous pores involved in active
bidirectional traffic of macromolecules (Citovsky and Zambryski, 1993). Although essential for
plant development and function, plasmodesmata represent an ‘Achilles heel’ that can be
exploited and manipulated by viruses to allow them to spread throughout plant tissues (Oparka
and Roberts, 2001). Most plant viruses enter the initially infected cell following mechanical
damage inflicted by a biological carrier (insect, fungus, etc) or by abrasion. After initial infection,
plant viruses move into adjacent healthy cells through plasmodesmata, the only direct link
between plant cells. Some viruses move through plasmodesmata as intact virions, causing
permanent modification to plasmodesmal structure. Viruses such as the Cauliflower mosaic
virus (CaMV) and the Tomato spotted wilt virus use protein tubules, encoded by viral proteins to
pass through the PD (Hull, 1992; Storms et al., 1995). Others viruses, such as the Dahlia
mosaic virus and Tobacco etch virus (TEV) pass through the PD as intact virions (Santa et al.,
72
1998). Other viruses such as the Tobacco mosaic virus, cause more subtle and often transient
alterations to plasmodesmata, allowing the viral genome to move as a ribonucleoprotein
complex, and encode for viral MPs which modify plasmodesmata (Citovsky and Zambryski,
1993). The variety of viral movement mechanisms suggests that a unified ‘strategy’ for viral
movement is unlikely to occur, given the variety of viral proteins and genome organizations
involved (Roberts and Oparka, 2003).
Though the exact method of DNA transfer between the organelles and the nucleus as well as
between the genomes of species remains largely unclear. Transfer of mitochondrial DNA to the
nucleus has been inferred to occur by an RNA intermediate (Adams el al., 1999), because the
nuclear copy resembles an edited mitochondrial mRNA rather than an unedited gene. The exact
model for chloroplast insertions is unknown but is thought to occur mainly as complete
insertions or in large tracts (Matsuo et al., 2005) rather than through an mRNA intermediate
and, as proposed in this thesis, to occur during pollen formation. It is possible that DNA from the
plastids as well as invading bacteria and fungi are non-specifically bound to movement proteins
and transported into the nucleus or to adjacent cells and then to the nucleus where it is
incorporated into the genome through non-homologous recombination or even through
homologous recombination with similar plant sequences.
4.5
Benefits of insertions
Continuous transfer of DNA from the plastid to the nucleus must either have a neutral effect or
confer some sort of positive selective advantage otherwise natural selection would have
selected against a phenomena that is undirected. A possible benefit of translocation of genes
from the plastids to the nucleus is that genes are moved from the plastid with no recombination
and a high redox-load to an environment with recombination and without the associated redoxload of the plastids. This would be beneficial to the genes of the plastids but the continuous
addition of more DNA into the nucleus could eventually lead to ‘genome obesity’ (Bennetzen
and Kellogg, 1997). A report by Van der Vyver et al. (publication submitted) has shown that the
mutation frequency in the nuclear located plastid sequences is far higher that in other nuclear
sequences and that similar mutations occur in the same regions of these nuclear located plastid
regions during independent radiation experiments. This would suggest that these ‘nonfunctional’ plastid sequences in the nucleus might play an important role as mutation buffers in
73
the nuclear genome. The incorporation of DNA of microbial origin in the plant nucleus might
lead to the acquisition of new genes increasing the fitness of the plant. Inserted tracts of noncoding DNA are probably dealt with in the same way as that of the plastids which is continually
eliminated. Acquisition of microbial and viral sequences might also lead to increased resistance
against the specific pathogen.
4.3 Contribution of this study to science
It is clear from this study that whole genome comparative analysis can provide valuable
information on genome regulation, variability and interactions. This study details some of the
dynamics of the nuclear genome of rice and the potentially fluctuating contributions from plastid
and mitochondrial genomes, their internal interaction, as well as potential their interaction with
microbial genomes resulting in DNA exchange. The starting hypothesis of this study was that
the rice genome contains DNA fragments acquired through horizontal DNA transfer events from
the genomes of its plastids and mitochondria as well as from microorganism living in association
with rice. To evaluate this hypothesis a bioinformatical approach was used to make whole
genome comparisons between the rice genome and each of the plastid and mitochondrial
genomes, as well as with various completed viral, bacterial and a fungal genome. While
insertions of the plastid genomes into the nuclear genome of plants and in particular rice is well
documented (Matsuo et al., 2005), this study was the first to do a comprehensive comparison of
the mitochondrial and chloroplast insertions in the nuclear rice genome regarding the total
amount of each in the nucleus, the representation of the different regions of the plastid and
mitochondrial genomes in the nucleus and the specific sites of insertion of each within the
nuclear genome. This study presented new evidence that showed that there is a difference in
the representations of the mitochondrial and chloroplast genomes in the nuclear genome. It is
hypothesized that this is either due to the different sizes of the two genomes or to different
mechanisms that regulate the insertion and deletion of DNA from the different organelles. was
by The data from this study supported the second alternative showing that not all areas of the
organellar genomes are equally represented, but that some sequences, like the rDNA
sequences from the chloroplast and the NADH sequences from the mitochondrion, are
represented at a much higher frequency, consistent with the notion that there are processes of
selective insertion or deletion of these transferred sequences.
74
A further contribution of this study towards the understanding the dynamics of the nuclear plant
genome was to investigate the insertion of viral DNA sequences. Overall this study presents the
first comprehensive assessment of viral integration and contribution to the rice nuclear genome.
The study confirmed a previous report of inserted fragments of the rice tungro bacilliform virus
(RTBV) (Nagano et al., 2000) but also identified additional fragments that have not yet been
reported. Another important finding was the identification of possible integration events of five
different RNA viruses into the rice nuclear genome. Fifty-one fragments that show similarity to
rice related RNA viruses were identified. The integration of RNA viruses into the plant genome
has not previously been reported. These viruses could form an important source of foreign DNA
contribution to the variation in plant genomes that has previously been ignored.
A third leg of this study investigated the possible contribution of bacterial genomes to that of the
rice genome. By comparing the genomes of three diverse bacteria with different levels of
association with plants, this study was able to identify a number of sequence similarities
between the rice and the bacterial genomes. While some of these sequence similarities may be
ascribed to conservation of sequences during evolution others point to horizontal transfer
events. The methods followed in this study, using different diverse bacteria in the comparison
proved valuable in distinguishing between evolutionarily conserved sequences and sequences
that are potential candidates for horizontal transfer events.
The fourth part of this study investigated the possible DNA contributions to the plant genome by
fungi. Performing a whole genome comparison between the nuclear genome of rice and that of
Magnaporthe grisea resulted in the identification of 144 sequences that shared significant
sequence similarity between the two genomes. Further analysis of these fragments showed that
while some of the similarity could be contributed to conserved evolution, others were most likely
due to a horizontal transfer event. The events could be the result of transfers either from fungi to
plants (and specifically between rice and Magnaporthe) or from plants to fungi.
From this study it appears that exogenous DNA insertions might be targeted to certain regions
of the chromosome rather than occurring at random. The identification and characterization of
these regions might be a powerful tool to develop highly polymorphic markers in rice or other
organisms. These regions might be especially valuable in clonal plants with low genetic diversity
that would otherwise hinder the use of genetic markers. Furthermore, understanding which
areas are more receptable to insertions could be valuable in the application of genetic
75
transformation of crop plants in targeting gene insertion into certain regions that would ensure
stable expression and inheritance of the transgene. Understanding the dynamics between plant
nuclei and the organelles as well as between plants and the microbes in their environment in
terms of gene transfer is also important in the debate about ‘gene escape’ from genetically
engineered organisms. In plants, one strategy to limit gene escape is so called ‘transgene
containment’ (Daniell et al., 1998), whereby the transgene is located in the chloroplast rather
than the nucleus. Because chloroplasts are degraded during pollen formation, it is thought that
the pollen will therefore be free of the transgene and thereby will prevent gene escape through
pollen to non-transgenic plants. As discussed in Chapter 2 of this thesis, degradation of
chloroplast during pollen formation might be the preferred stage for transfer of the chloroplast
DNA to the plant nucleus and a strategy for ‘gene containment’ through chloroplast
transformation might limit gene escape but is not a failsafe method to prevent it.
Because of the recorded relative high frequency with which mitochondria exchange genes,
researchers have focused on chloroplast sequences “which seem essentially immune to HGT”
(Bergthorsson et al., 2003) to do phylogenetic studies in plants (including DNA barcoding;
Chase et al., 2005; Rubinoff et al., 2006). This study clearly shows that caution is necessary
when interpreting plant phylogenies using chloroplast genes as they may not reflect the
underlying phylogeny of the organism.
4.6
Future perspectives
The mechanisms whereby horizontal transfer and insertion of foreign DNA take place are still
poorly understood. While further bioinformatical comparative studies like this could provide
important information on this subject and help to elucidate some of the important factors, they
are limited by the fact that we are looking only at a representative genome of any species that
might not reflect the diversity of insertions that might be present in a given population of plants
or even the diversity within a plant. Another clear need is to uncover very recent transfers that
could provide further insight into the transfer process and answer several outstanding questions:
how long are the DNA tracts that are transferred; does DNA move back and forth between
donors and recipients, or is transfer unidirectional; are there lineages experiencing higher levels
of DNA transfer which have common characteristics that might suggest a transfer mechanism?
Addressing these questions will require both broad surveys and dense sampling.
76
To determine or demonstrate horizontal DNA transfer between microbes and plants in vivo is
difficult, since the major criticism of such studies would be that the observed results are simply a
measure of the contamination of the plant DNA sample with the microbe, rather than gene
transfer between the two genomes. One possible experiment to address the question would be
to co-culture a microbe containing an antibiotic resistance gene, with the appropriate plantspecific signals to be functional in the plant, and a plant cell-suspension or callus culture.
Treating the culture with an appropriate antibiotic treatment to kill the microbe it does not have
resistance to and subsequently selecting plant cells with antibiotic resistance acquired through
transfer of the antibiotic resistance gene from the microbe to the plant would confirm transfer.
Further analysis can then determine the exact position of the insertion of this gene into the plant
genome and the extent of the transferred DNA. The selection would also indicate the rate at
which a single gene is transferred and if regions outside the functional gene were co-transferred
then it would also give a frequency for the transfer of any microbial fragment. However this
experiment would not address the question of how frequently such a transfer would be
maintained in the absence of strong positive selection, an event that would occur most likely at
a far lower frequency than would the transfer of ‘non-functional’ DNA sequences between the
plant and microbe. Massive PCR screening and sequence analysis would be necessary to
identify the presence of non-functional sequences, and care would have to be taken to eliminate
the possibility of genetic contamination of the samples.
Another shortfall of current research in horizontal transfer of DNA is that so far all reported
cases of horizontal gene transfer in plants involve evolutionarily distant donors and recipients
(Mower et al., 2004; Wikström et al., 2001; Bergthorsson et al., 2004). This is most likely
because studies rely on the phylogenetic signal of the donated DNA being discordant with that
of the host to confidently detect horizontal transfer events. If transfer events occur within a plant
family or between closely related species, gene sequences may not be divergent enough to
provide strong enough evidence to support a hypothesis involving horizontal transfer. This
limitation may present a significant barrier to obtaining a comprehensive view of the tempo and
pattern of plant-to-plant transfer events. If any of the dominant modes of transfer involve
mechanisms, such as illegitimate pollination, that favor closely related donors and recipients it
would not be detected or accepted using the current criteria needed to support such
observations as likely resulting from a horizontal transfer event.
77
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Appendix
Description of table headings:
Start and End provides reference points on the respective genomes for the start and end of
each aligned fragment.
Ori shows the orientation of the alignment (5’-3’ as + or 3’-5’ as -) relative to its orientation in its
native genome
Name gives the chromosome number of each of the rice chromosomes
Stats provide the specific statistics associated with each alignment as follows:
Score: The bit score value is derived from the raw alignment score in which the
statistical properties of the scoring system used have been taken into account. Because
bit scores have been normalized with respect to the scoring system, they can be used to
compare alignment scores from different searches.
E-val: Expectation value. The number of different alignents with scores equivalent to or
better than S that are expected to occur in a database search by chance. The lower the
E-value, the more significant the score.
%ID: Percentage identity, the extent to which two sequences are identical.
Length: Length of the alignment in base pairs.
101
Table A-1
Chloroplast DNA homologies in the rice nuclear genome
Chloroplast
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
96210
96425
+
1
525553
525762
+
179
8.30E-94
96
215
49008
49091
+
1
2521305
2521393
+
61
1.50E-44
92
89
49097
49224
+
1
2521393
2521514
+
57
1.50E-44
86
129
21846
21953
-
1
3561919
3562026
+
100
1.60E-48
98
108
6536
6934
+
1
5002377
5002775
+
379
0
99
399
42532
42965
+
1
5002776
5003204
+
390
0
97
434
45519
45574
+
1
5003204
5003259
+
56
0
100
56
45613
45754
+
1
5003298
5003439
+
130
0
98
142
57885
58006
-
1
5180980
5181100
+
117
4.90E-109
99
121
57756
57875
-
1
5181111
5181229
+
107
4.90E-109
97
119
57885
58006
-
1
5182800
5182920
+
117
4.90E-109
99
121
57756
57875
-
1
5182931
5183049
+
107
4.90E-109
97
119
91192
91345
-
1
5726538
5726690
+
145
1.50E-73
99
153
82949
83035
+
1
5732527
5732612
+
70
7.30E-29
95
86
19358
19387
+
1
7189094
7189123
+
30
0.0016
100
30
22311
22367
-
1
7226377
7226433
+
53
7.40E-16
98
57
94325
94399
-
1
7226581
7226654
+
66
1.80E-26
97
74
12512
13987
+
1
7758510
7759987
+
1470
0
100
1478
13997
15200
+
1
7759996
7761198
+
1196
0
100
1204
19231
19341
+
1
8307163
8307274
+
45
5.20E-11
85
113
6407
6487
-
1
8474004
8474085
+
54
5.90E-18
91
82
43490
43683
+
1
9517040
9517231
+
160
6.50E-138
95
196
43700
43829
+
1
9517249
9517378
+
118
6.50E-138
98
130
56309
56410
+
1
11345224
11345325
+
56
1.60E-20
88
104
5683
5857
+
1
11419187
11419359
+
115
6.70E-66
91
175
5877
5937
+
1
11419362
11419421
+
41
6.70E-66
92
61
40083
40141
-
1
11424887
11424945
+
35
1.40E-05
90
59
89199
89625
-
1
12345480
12345904
+
326
2.10E-181
94
426
125496
125922
+
1
12345480
12345904
+
326
2.10E-177
94
426
126638
126654
+
1
12379680
12379695
+
16
2.10E-177
100
16
101
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
11817
11882
+
1
12842604
12842669
+
62
5.70E-21
98
66
81712
81770
+
1
12927880
12927937
+
54
7.10E-190
98
58
133351
133409
-
1
12927880
12927937
+
54
3.70E-188
98
58
81761
82163
+
1
12929119
12929514
+
306
7.10E-190
94
402
132958
133360
-
1
12929119
12929514
+
306
3.70E-188
94
402
31790
31842
+
1
13407835
13407887
+
49
8.80E-13
98
53
51627
53330
+
1
14119934
14121638
+
1546
0
98
1706
53424
53871
+
1
14121733
14122179
+
397
0
97
449
53859
53993
+
1
14122182
14122315
+
134
0
100
134
54010
54169
+
1
14122333
14122491
+
151
0
99
159
67855
68195
-
1
14122489
14122826
+
289
2.40E-159
96
341
38650
38731
-
1
14158933
14159014
+
39
3.10E-09
87
83
90814
91043
+
1
14724876
14725105
+
143
2.30E-72
90
231
22540
22826
+
1
15109868
15110154
+
263
6.40E-139
98
287
44985
45028
-
1
15792161
15792204
+
36
5.20E-08
95
44
36305
36423
-
1
16273246
16273364
+
65
1.50E-23
88
121
35827
35899
-
1
16678584
16678656
+
69
8.50E-25
99
73
95687
95863
-
1
17022813
17022988
+
168
3.00E-87
99
176
60691
61075
+
1
17321637
17322025
+
365
1.20E-204
98
389
79196
79509
+
1
17735430
17735741
+
277
5.40E-210
97
313
79567
79699
+
1
17735800
17735932
+
117
5.40E-210
97
133
39462
39556
+
1
18041405
18041497
+
30
0.0028
83
98
69142
69338
-
1
18315759
18315954
+
122
7.70E-60
90
198
4125
4200
+
1
18445151
18445228
+
51
5.50E-60
91
79
4257
4313
+
1
18445269
18445326
+
46
1.70E-56
95
58
4355
4435
+
1
18445365
18445446
+
54
1.70E-56
91
82
4156
4200
+
1
18460337
18460381
+
37
7.00E-52
96
45
4203
4316
+
1
18460379
18460492
+
63
5.50E-60
89
115
4355
4435
+
1
18460529
18460609
+
49
5.50E-60
90
81
24788
25264
-
1
18664084
18664560
+
465
1.40E-257
99
477
19839
19908
-
1
18806633
18806702
+
66
1.90E-24
99
70
129406
129421
-
1
18928121
18928135
+
15
0
100
15
109
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
124362
124378
+
1
18941120
18941135
+
16
0.00021
100
16
122359
122392
+
1
18952057
18952089
+
25
1.40E-09
94
33
100861
100876
+
1
18953988
18954002
+
15
3.80E-35
100
15
114300
114315
+
1
18971096
18971110
+
15
3.80E-35
100
15
133575
133590
-
1
19000471
19000485
+
15
0
100
15
85781
87335
+
1
19004491
19006043
+
1499
0
99
1555
127786
129340
-
1
19004491
19006043
+
1499
0
99
1555
128784
128814
+
1
19005016
19005045
+
30
1.40E-09
100
30
87329
87682
+
1
19009465
19009815
+
333
0
99
353
127439
127792
-
1
19009465
19009815
+
333
0
99
353
118117
118192
-
1
19011938
19012013
+
22
0
82
78
65773
66154
+
1
19014684
19015064
+
369
5.00E-207
99
381
99204
99290
-
1
19016193
19016278
+
86
2.20E-38
100
86
115831
115917
+
1
19016193
19016278
+
86
3.80E-35
100
86
121995
122013
-
1
19016201
19016218
+
18
0
100
18
109286
109301
-
1
19020803
19020817
+
15
0
100
15
109286
109301
-
1
19021451
19021465
+
15
0
100
15
100663
100678
-
1
19042940
19042954
+
15
0
100
15
103688
103703
-
1
19046636
19046650
+
15
0
100
15
88675
88804
-
1
19072483
19072611
+
81
2.10E-35
91
129
49675
49722
+
1
19301664
19301711
+
37
1.50E-06
94
49
63343
63443
+
1
19322527
19322625
+
92
3.10E-179
98
100
63434
63502
+
1
19323722
19323789
+
68
3.10E-179
100
68
63515
63761
+
1
19323804
19324048
+
201
3.10E-179
95
249
63780
64449
+
1
19324067
19324735
+
617
0
98
669
17208
17257
-
1
19442501
19442548
+
30
6.50E-15
90
50
17120
17198
-
1
19442550
19442623
+
39
6.50E-15
87
79
94523
94632
-
1
19789806
19789914
+
77
5.00E-33
93
109
56718
57010
+
1
20766806
20767098
+
273
0
98
293
57099
57875
+
1
20767167
20767940
+
736
0
99
776
57883
58265
+
1
20767949
20768330
+
346
0
98
382
58314
58674
+
1
20768380
20768741
+
342
0
99
362
110
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
58689
59130
+
1
20768761
20769201
+
425
0
99
441
59161
59410
+
1
20769234
20769482
+
233
0
98
249
59468
59548
+
1
20769541
20769618
+
68
0
96
80
59580
60031
+
1
20769619
20770068
+
431
0
99
451
60039
60639
+
1
20770076
20770674
+
556
0
98
600
60680
60828
+
1
20770716
20770863
+
148
0
100
148
60847
61075
+
1
20770869
20771100
+
208
0
97
232
61162
61319
+
1
20771187
20771343
+
153
0
99
157
61312
61984
+
1
20772415
20773085
+
632
0
99
672
1974
2176
-
1
22814887
22815087
+
104
3.00E-45
88
204
3553
3829
-
1
23599715
23599988
+
185
3.30E-95
91
281
24666
24714
-
1
23754948
23754996
+
41
1.30E-08
96
49
88677
88837
-
1
24018229
24018384
+
104
1.20E-87
91
160
88498
88662
-
1
24018382
24018548
+
84
1.20E-87
88
168
53591
53687
-
1
24482114
24482210
+
81
2.10E-35
96
97
22209
22423
-
1
24586006
24586223
+
37
1.90E-06
79
225
23130
23366
-
1
24730249
24730480
+
142
1.10E-68
90
238
115509
115525
+
1
25125613
25125628
+
16
1.70E-113
100
16
106988
107004
+
1
25135827
25135842
+
16
1.30E-111
100
16
83625
83931
-
1
25167332
25167640
+
215
2.90E-115
92
311
131190
131496
+
1
25167332
25167640
+
215
1.70E-113
92
311
50186
50267
-
1
26594624
26594704
+
57
4.10E-21
93
81
65222
65358
+
1
27573564
27573699
+
108
1.70E-51
95
136
93522
93632
-
1
28444635
28444745
+
80
8.10E-35
93
112
48525
48563
-
1
28575868
28575906
+
31
0.00048
95
39
82620
82958
+
1
28741733
28742071
+
319
3.10E-177
99
339
132163
132501
-
1
28741733
28742071
+
319
1.90E-172
99
339
55866
55957
-
1
28741789
28741880
+
76
2.00E-32
96
92
108419
108435
-
1
28751141
28751156
+
16
2.50E-171
100
16
109312
109819
+
1
28857412
28857918
+
479
2.70E-266
99
507
76238
76519
-
1
28857919
28858199
+
261
7.10E-159
98
281
121285
121304
+
1
28858879
28858898
+
16
2.70E-266
95
20
111
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
23457
23496
+
1
29484695
29484734
+
40
3.00E-09
100
40
49097
49170
-
1
29649160
29649229
+
35
2.30E-06
87
75
54489
54826
-
1
30408357
30408693
+
182
1.40E-95
88
338
43757
43866
+
1
30752874
30752981
+
58
4.60E-174
88
110
43909
44046
+
1
30753007
30753144
+
107
4.60E-174
94
139
43976
44028
+
1
30753149
30753202
+
38
9.90E-134
93
54
44021
44289
+
1
30753313
30753576
+
189
4.60E-174
93
269
77337
77526
-
1
31309861
31310049
+
103
1.60E-48
88
191
13639
13675
-
1
32289319
32289356
+
30
0.0036
95
38
23733
23767
-
1
32537633
32537667
+
31
0.0007
97
35
38396
38482
-
1
32730866
32730953
+
84
2.90E-35
99
88
123788
123805
-
1
33018677
33018693
+
17
5.30E-109
100
17
109572
109591
+
1
33023312
33023330
+
19
3.20E-93
100
19
98918
98981
+
1
33077890
33077952
+
59
2.60E-22
98
63
116140
116203
-
1
33077890
33077952
+
59
2.90E-19
98
63
67009
67109
+
1
33077952
33078051
+
88
5.20E-152
97
100
92040
92159
+
1
33078135
33078253
+
103
5.20E-152
97
119
122962
123081
-
1
33078135
33078253
+
103
5.30E-109
97
119
95701
95811
-
1
33078253
33078362
+
98
8.90E-95
97
110
119310
119420
+
1
33078253
33078362
+
98
3.20E-93
97
110
90684
90802
-
1
33078362
33078479
+
102
8.90E-95
97
118
124319
124437
+
1
33078362
33078479
+
102
3.20E-93
97
118
92696
92836
+
1
33078816
33078954
+
124
5.20E-152
97
140
122285
122425
-
1
33078816
33078954
+
124
5.30E-109
97
140
98545
98630
+
1
33359897
33359981
+
81
2.00E-35
99
85
13082
13422
+
1
33484586
33484926
+
341
0
100
341
15980
16301
-
1
33484964
33485285
+
322
0
100
322
15911
15940
-
1
33485325
33485354
+
30
0
100
30
15500
15902
-
1
33485363
33485765
+
403
0
100
403
15422
15491
-
1
33485774
33485843
+
70
0
100
70
15263
15418
-
1
33488995
33489150
+
156
0
100
156
14949
15219
-
1
33489194
33489463
+
263
0
99
271
112
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
13997
14909
-
1
33489503
33490413
+
893
0
99
913
13668
13987
-
1
33490424
33490744
+
317
0
100
321
21967
25531
+
1
33492335
33495899
+
3549
0
100
3565
44892
45431
+
1
33496051
33496593
+
295
0
88
547
47041
47170
+
1
33496831
33496960
+
90
0
92
130
47379
47635
+
1
33497242
33497497
+
206
0
95
258
47658
47823
+
1
33497579
33497741
+
119
0
93
167
47824
49055
+
1
33497752
33498988
+
1050
0
96
1238
48136
49091
+
1
33498069
33499029
+
833
0
97
961
49097
49224
+
1
33499029
33499150
+
77
0
90
129
36762
41364
+
1
33502201
33506803
+
4545
0
100
4605
41374
41491
+
1
33506813
33506930
+
118
0
100
118
41535
42468
+
1
33506974
33507907
+
920
0
100
936
42477
43683
+
1
33507916
33509114
+
1157
0
99
1209
43700
43898
+
1
33509131
33509329
+
195
0
100
199
43909
44314
+
1
33509341
33509744
+
398
0
100
406
30468
30738
+
1
33528293
33528563
+
227
0
96
271
29541
30299
-
1
33534404
33535162
+
755
0
100
759
29149
29503
-
1
33535200
33535554
+
355
0
100
355
27483
29137
-
1
33535567
33537221
+
1640
0
100
1656
49511
49583
-
1
33539456
33539528
+
73
0
100
73
49286
49502
-
1
33539537
33539753
+
217
0
100
217
46504
49273
-
1
33539764
33542536
+
2749
0
100
2773
46286
46495
-
1
33542545
33542754
+
210
0
100
210
46201
46276
-
1
33542764
33542839
+
76
0
100
76
45968
46165
-
1
33542873
33543065
+
178
0
97
198
45613
45946
-
1
33543087
33543420
+
330
0
100
334
45314
45552
-
1
33543456
33543694
+
239
0
100
239
8101
8203
+
1
33546519
33546621
+
103
0
100
103
8212
8513
+
1
33546630
33546931
+
302
0
100
302
8561
8607
+
1
33546979
33547025
+
43
0
98
47
8623
11432
+
1
33547041
33549855
+
2795
0
100
2815
113
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
11487
13987
+
1
33549910
33552407
+
2451
0
99
2503
36195
36238
+
1
33551207
33551250
+
36
0
95
44
13997
14346
+
1
33552417
33552764
+
338
0
99
350
43009
43044
+
1
33559890
33559925
+
32
0
97
36
16160
16195
-
1
33567267
33567302
+
36
0
100
36
94601
94767
-
1
33824661
33824826
+
166
0
100
166
120354
120520
+
1
33824661
33824826
+
166
0
100
166
121590
121607
+
1
33824800
33824816
+
17
0
100
17
71468
71749
+
1
33824834
33825114
+
281
0
100
281
71784
74265
+
1
33825150
33827634
+
2444
0
100
2488
74282
74547
+
1
33827652
33827916
+
261
0
100
265
74585
75875
+
1
33827955
33829244
+
1282
0
100
1290
75987
76222
+
1
33829356
33829590
+
231
0
100
235
76238
76511
+
1
33829606
33829878
+
273
0
100
273
76597
77696
+
1
33829964
33831063
+
1084
0
100
1100
129478
129495
-
1
33830294
33830310
+
17
0
100
17
77724
78372
+
1
33831092
33831738
+
637
0
100
649
118587
118615
+
1
33831736
33831763
+
28
0
100
28
119712
119735
-
1
33833112
33833134
+
19
0
96
23
119666
119686
-
1
33833160
33833180
+
17
0
95
21
119407
119454
-
1
33833546
33833592
+
35
0
94
47
120354
120374
-
1
33836123
33836142
+
20
0
100
20
126422
126438
+
1
33837256
33837271
+
16
0
100
16
93471
94212
+
1
33837965
33838705
+
741
0
100
741
120909
121650
-
1
33837965
33838705
+
741
0
100
741
120493
120510
-
1
33838008
33838024
+
17
0
100
17
93382
93487
-
1
33838701
33838805
+
101
0
99
105
121634
121739
+
1
33838701
33838805
+
101
0
99
105
93007
93374
-
1
33838814
33839180
+
355
0
99
367
121747
122114
+
1
33838814
33839180
+
355
0
99
367
115839
115857
-
1
33839062
33839079
+
18
0
100
18
122028
122047
-
1
33839095
33839113
+
19
0
100
19
114
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
92673
92998
-
1
33839194
33839518
+
325
0
100
325
122123
122448
+
1
33839194
33839518
+
325
0
100
325
120912
120931
-
1
33844478
33844496
+
19
0
100
19
115878
115894
+
1
33848162
33848177
+
16
0
100
16
111208
111226
+
1
33855621
33855638
+
18
0
100
18
94774
96546
+
1
33858780
33860551
+
1772
0
100
1772
118575
120347
-
1
33858780
33860551
+
1772
0
100
1772
55891
55969
-
1
33860589
33860666
+
78
0
100
78
82676
82742
+
1
33860601
33860666
+
62
0
98
66
132379
132445
-
1
33860601
33860666
+
62
0
98
66
54738
55539
-
1
33860717
33861517
+
797
0
100
801
51115
52639
+
1
33866500
33868023
+
1520
0
100
1524
84794
87093
-
1
33868069
33870367
+
2284
0
100
2300
128028
130327
+
1
33868069
33870367
+
2284
0
100
2300
128784
128814
-
1
33868825
33868854
+
30
0
100
30
129822
129873
-
1
33869863
33869913
+
19
0
84
55
84793
84845
-
1
33870267
33870318
+
48
0
98
52
130276
130328
+
1
33870267
33870318
+
48
0
98
52
130103
130119
-
1
33870405
33870420
+
16
0
100
16
107037
107232
+
1
33870460
33870654
+
195
0
100
195
119712
119735
-
1
33871744
33871766
+
19
0
96
23
119407
119454
-
1
33872178
33872224
+
35
0
94
47
53117
53330
+
1
33880027
33880239
+
209
0
100
213
53424
53871
+
1
33880333
33880779
+
417
0
98
449
53859
53993
+
1
33880782
33880915
+
134
0
100
134
54010
54668
+
1
33880933
33881590
+
658
0
100
658
60055
60639
+
1
33884444
33885027
+
584
0
100
584
60680
61075
+
1
33885069
33885468
+
376
0
99
400
61162
62242
+
1
33885556
33886634
+
1068
0
100
1080
120912
120931
+
1
33888772
33888790
+
19
0
100
19
87852
88349
-
1
33890880
33891377
+
494
0
100
498
126772
127269
+
1
33890880
33891377
+
494
0
100
498
115
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
85928
87815
-
1
33891415
33893296
+
1845
0
99
1889
127306
129193
+
1
33891415
33893296
+
1845
0
99
1889
128784
128814
-
1
33892888
33892917
+
30
0
100
30
52773
53109
+
1
33893370
33893705
+
336
0
100
336
126422
126438
-
1
33899927
33899942
+
16
0
100
16
55828
57010
+
1
33899948
33901131
+
1156
0
99
1184
132180
132219
+
1
33899948
33899985
+
27
0
92
39
82676
82767
-
1
33899986
33900076
+
87
0
99
91
132354
132445
+
1
33899986
33900076
+
87
0
99
91
57099
57653
+
1
33901210
33901762
+
542
0
99
554
57648
57875
+
1
33904937
33905163
+
227
0
100
227
57883
58265
+
1
33905172
33905553
+
378
0
100
382
58314
58674
+
1
33905603
33905964
+
354
0
99
362
58689
59081
+
1
33905980
33906372
+
385
0
99
393
88615
89655
+
1
33906372
33907410
+
1020
0
100
1040
125466
126506
-
1
33906372
33907410
+
1020
0
100
1040
89702
90135
+
1
33907458
33907891
+
426
0
100
434
124986
125419
-
1
33907458
33907891
+
426
0
100
434
86603
87815
+
1
33907909
33909115
+
1185
0
99
1213
127306
128518
-
1
33907909
33909115
+
1185
0
99
1213
87851
87977
+
1
33909152
33909277
+
126
0
100
126
127144
127270
-
1
33909152
33909277
+
126
0
100
126
125519
125542
-
1
33910616
33910638
+
19
0
96
23
117147
117164
+
1
33913611
33913627
+
17
1.10E-152
100
17
117204
117275
+
1
33913672
33913742
+
39
1.10E-152
89
71
117305
117452
+
1
33913773
33913919
+
50
1.10E-152
83
154
117833
117927
+
1
33914286
33914379
+
50
1.10E-152
88
94
97453
98367
+
1
33914493
33915406
+
903
0
100
915
116754
117668
-
1
33914493
33915406
+
903
0
100
915
98383
99592
+
1
33915423
33916634
+
1192
0
100
1212
115529
116738
-
1
33915423
33916634
+
1192
0
100
1212
121995
122013
+
1
33916307
33916324
+
18
1.10E-152
100
18
116
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
52750
52997
-
1
34038281
34038526
+
227
2.10E-122
98
247
2133
2293
-
1
34107535
34107695
+
129
3.90E-60
95
161
40558
40638
-
1
34351432
34351512
+
81
6.20E-31
100
81
35461
35566
+
1
34352704
34352809
+
86
1.60E-34
95
106
37142
37293
-
1
34588936
34589094
+
84
2.50E-35
88
160
52264
52402
-
1
34698144
34698281
+
134
5.40E-67
99
138
80657
80749
+
1
34698382
34698473
+
88
1.40E-39
99
92
91512
91579
-
1
34698889
34698955
+
63
1.10E-24
99
67
100540
100912
+
1
35791859
35792230
+
364
6.20E-200
99
372
114302
114581
-
1
35791859
35792137
+
271
5.20E-152
99
279
100618
100670
-
1
35791937
35791988
+
44
7.80E-11
96
52
114451
114503
+
1
35791937
35791988
+
44
2.10E-11
96
52
114209
114240
-
1
35792200
35792230
+
31
5.20E-152
100
31
111103
111119
-
1
35802942
35802957
+
16
5.20E-152
100
16
108718
108734
-
1
35803528
35803543
+
16
5.20E-152
100
16
125493
125509
+
1
35854786
35854801
+
16
6.20E-200
100
16
57556
57660
+
1
35907449
35907552
+
92
8.80E-98
97
104
57731
57813
+
1
35907550
35907631
+
78
5.10E-77
99
82
57782
57847
+
1
35907633
35907697
+
65
2.60E-69
100
65
57731
57848
+
1
35907729
35907845
+
113
8.80E-98
99
117
7183
7420
-
1
36736060
36736297
+
234
6.20E-124
100
238
7119
7214
-
1
36736297
36736392
+
76
2.40E-30
95
96
45839
45879
+
1
37230687
37230727
+
29
0.0011
93
41
87922
88203
+
1
37346806
37347090
+
167
1.20E-86
90
287
88127
88212
+
1
37347091
37347173
+
65
7.00E-26
94
85
24757
24787
+
1
37703686
37703716
+
31
0.00026
100
31
52778
52899
+
1
38167315
38167434
+
66
2.60E-40
89
122
65684
65764
-
1
38349283
38349362
+
49
2.40E-16
90
81
61083
62502
-
1
38596514
38597931
+
1415
0
100
1419
60680
61075
-
1
38597940
38598334
+
395
0
100
395
60039
60651
-
1
38598364
38598975
+
612
0
100
612
59161
60031
-
1
38598984
38599851
+
862
0
100
870
117
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
58938
59130
-
1
38599883
38600074
+
192
0
100
192
21254
21506
+
1
39093615
39093867
+
245
8.00E-189
99
253
49030
49091
+
1
39095008
39095074
+
43
1.70E-142
91
67
44934
45018
+
1
39095080
39095163
+
54
5.60E-149
91
86
35055
35237
-
1
39097197
39097379
+
179
8.50E-148
99
183
35350
35481
+
1
39097590
39097721
+
120
8.00E-189
98
132
37254
37330
-
1
39101503
39101579
+
77
4.90E-89
100
77
34411
34528
-
1
39102379
39102496
+
118
8.50E-148
100
118
91307
91404
-
1
39293454
39293550
+
57
4.10E-21
90
97
10626
10685
-
1
39303574
39303633
+
29
0.00065
87
61
103905
103925
-
1
39406157
39406176
+
16
5.80E-236
95
20
105157
105175
-
1
39438775
39438792
+
18
3.30E-274
100
18
85065
85156
+
1
39443181
39443271
+
91
9.30E-66
100
91
129965
130056
-
1
39443181
39443271
+
91
0
100
91
52016
52214
-
1
39445747
39445944
+
194
9.60E-103
99
198
55819
55904
-
1
39447874
39447958
+
85
8.50E-38
100
85
132354
132392
-
1
39447874
39447911
+
38
0
100
38
132171
132219
-
1
39447912
39447958
+
36
0
94
48
59757
59856
+
1
39448499
39448597
+
99
1.70E-70
100
99
54654
54953
+
1
39448764
39449062
+
279
2.20E-177
98
299
91597
91657
+
1
39450172
39450231
+
60
2.20E-177
100
60
123464
123524
-
1
39450172
39450231
+
60
0
100
60
103904
103988
-
1
39451842
39451925
+
84
0
100
84
103472
103896
-
1
39451934
39452358
+
421
0
100
425
85733
85908
-
1
39912329
39912503
+
135
1.40E-67
94
175
36617
36747
+
1
40330387
40330516
+
68
1.40E-26
88
132
35064
35165
+
1
40924507
40924607
+
74
4.50E-35
93
102
49184
49224
+
1
41479818
41479858
+
33
3.10E-05
95
41
26309
26369
-
1
41861482
41861542
+
57
1.70E-26
98
61
3094
3146
-
1
41874240
41874293
+
30
1.70E-26
89
54
52240
52591
-
1
42048687
42049037
+
351
2.70E-196
100
351
20352
20438
+
1
42137042
42137128
+
71
1.90E-27
95
87
118
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
39187
39615
+
1
42648642
42649070
+
393
1.90E-211
98
429
23245
23286
-
1
42708152
42708193
+
30
2.00E-06
93
42
1900
2482
-
1
43195709
43196290
+
449
1.50E-250
94
589
92115
92700
-
2
807670
808254
+
541
0
98
585
122421
123006
+
2
807670
808254
+
541
0
98
585
132956
132976
-
2
810967
810987
+
17
0
95
21
90815
92120
-
2
811408
812712
+
1185
0
98
1305
123001
124306
+
2
811408
812712
+
1185
0
98
1305
89669
90808
-
2
812727
813864
+
1059
0
98
1143
124313
125418
+
2
812727
813830
+
1029
0
98
1109
89142
89658
-
2
813875
814387
+
472
0
98
516
125463
125979
+
2
813875
814387
+
472
0
98
516
96830
98367
+
2
814398
815938
+
1410
0
98
1542
116754
118291
-
2
814398
815938
+
1410
0
98
1542
98383
100002
+
2
815956
817575
+
1542
0
99
1622
114302
116738
-
2
815956
818393
+
2332
0
99
2440
100002
100872
+
2
817576
818445
+
835
0
99
871
114451
114503
+
2
818193
818244
+
44
6.70E-11
96
52
100618
100670
-
2
818193
818244
+
44
0
96
52
100870
101001
+
2
818435
818565
+
119
0
98
131
114120
114240
-
2
818446
818565
+
108
0
98
120
105735
105751
-
2
822100
822115
+
16
0
100
16
115509
115525
+
2
837295
837310
+
16
0
100
16
43788
43827
+
2
912959
912998
+
32
0.00024
95
40
15651
15896
+
2
1025239
1025482
+
154
7.20E-79
91
246
88924
89001
-
2
2430726
2430802
+
77
5.00E-33
100
77
13888
13958
+
2
2490393
2490464
+
64
1.70E-23
97
72
88951
89141
+
2
2490507
2490694
+
166
1.10E-100
97
190
111574
111801
-
2
2944012
2944241
+
198
7.50E-222
97
230
111336
111564
-
2
2944249
2944476
+
216
7.50E-222
99
228
101822
101840
-
2
2960541
2960558
+
18
7.50E-222
100
18
119
Chloroplast
Start
Rice Chromosome
End
Ori
Name
48054
48130
-
20057
20114
51852
Stats
Start
End
Ori
Score
E-val
%ID
Length
2
3097087
3097167
+
61
3.90E-22
94
81
+
2
3449847
3449904
+
39
9.40E-09
92
59
51905
+
2
4706185
4706237
+
53
9.90E-19
100
53
24377
24469
-
2
5815627
5815722
+
69
4.10E-26
93
97
30936
31077
-
2
6171945
6172086
+
135
3.70E-64
99
143
32792
33065
+
2
6648926
6649199
+
246
8.50E-127
97
274
18760
18820
+
2
6680240
6680299
+
41
1.10E-43
92
61
18811
18923
+
2
6680301
6680413
+
78
1.10E-43
92
114
7513
7550
+
2
7759551
7759588
+
34
1.30E-06
97
38
12555
12831
+
2
7858580
7858853
+
241
7.20E-126
97
277
36195
36238
+
2
7858810
7858853
+
36
1.10E-07
95
44
49922
49982
+
2
8144701
8144761
+
46
2.40E-14
94
62
31878
32006
+
2
8414079
8414207
+
29
7.30E-08
80
133
52727
52801
-
2
9082463
9082536
+
58
1.00E-21
95
74
79220
79505
+
2
9415245
9415530
+
216
7.40E-116
94
288
34219
34629
+
2
9463408
9463821
+
314
3.20E-169
94
414
96561
96656
+
2
9726302
9726396
+
83
1.30E-36
97
95
64154
64975
+
2
10310944
10311762
+
484
4.7e-313
90
832
65010
65164
+
2
10311782
10311934
+
83
4.7e-313
88
159
33180
33255
+
2
10337585
10337661
+
36
1.20E-06
86
80
5370
5411
-
2
10864500
10864541
+
38
1.30E-06
98
42
92108
92178
+
2
11195300
11195369
+
62
4.60E-80
97
70
92294
92439
+
2
11195880
11196024
+
113
4.60E-80
94
145
9703
9811
+
2
11196650
11196758
+
93
3.00E-81
96
109
22761
22878
+
2
11196831
11196948
+
86
3.00E-81
93
118
47539
47635
+
2
12183572
12183668
+
73
1.20E-30
94
97
13452
13581
+
2
12184872
12185002
+
100
2.00E-44
94
132
111574
112893
-
2
13297302
13298623
+
1286
0
99
1322
113071
113087
-
2
13298333
13298348
+
16
0
100
16
110200
111564
-
2
13298631
13300000
+
1283
0
98
1371
110121
110194
-
2
13300000
13300072
+
65
0
97
73
21554
21658
+
2
13301518
13301622
+
73
1.00E-52
92
105
120
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
28038
28102
+
2
13403456
13403520
+
61
1.00E-52
98
65
29057
29101
-
2
13403540
13403585
+
30
7.10E-05
91
46
58946
59130
+
2
13540571
13540753
+
172
2.00E-177
98
184
59161
59344
+
2
13540784
13540966
+
167
2.00E-177
98
183
43009
43044
+
2
14188838
14188873
+
32
0
97
36
48096
48939
+
2
14202863
14203706
+
836
0
100
844
27388
28622
-
2
14203718
14204952
+
1228
0
100
1236
27257
27349
-
2
14204991
14205083
+
89
0
99
93
27117
27248
-
2
14205092
14205223
+
132
0
100
132
26602
27108
-
2
14205232
14205738
+
507
0
100
507
22488
22766
+
2
14210381
14210659
+
267
0
99
279
19789
20614
+
2
14210659
14211484
+
818
0
100
826
20624
21291
+
2
14211494
14212161
+
664
0
100
668
26501
27106
+
2
14212171
14212776
+
606
0
100
606
27117
27248
+
2
14212787
14212918
+
132
0
100
132
27257
27341
+
2
14212927
14213011
+
85
0
100
85
27387
29137
+
2
14213057
14214805
+
1712
0
99
1752
29149
29503
+
2
14214816
14215170
+
351
0
100
355
29541
30629
+
2
14215208
14216296
+
1085
0
100
1089
20624
25379
-
2
14216292
14221047
+
4728
0
100
4756
18642
20614
-
2
14221057
14223029
+
1949
0
100
1973
17380
18625
-
2
14223045
14224290
+
1238
0
100
1246
17118
17331
-
2
14224345
14224558
+
210
0
100
214
17001
17043
-
2
14224633
14224675
+
43
0
100
43
16679
16968
-
2
14224679
14224968
+
290
0
100
290
16880
16927
+
2
14224720
14224767
+
40
8.20E-16
96
48
15980
16670
-
2
14224977
14225667
+
679
0
100
691
15911
15940
-
2
14225707
14225736
+
30
0
100
30
15500
15902
-
2
14225745
14226147
+
399
0
100
403
15263
15491
-
2
14226156
14226384
+
229
0
100
229
14949
15219
-
2
14226428
14226697
+
267
0
100
271
13997
14909
-
2
14226737
14227647
+
897
0
100
913
121
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
11505
13987
-
2
14227657
14230141
+
2445
0
100
2485
36195
36238
-
2
14228815
14228858
+
36
0
95
44
8623
11436
-
2
14230211
14233025
+
2791
0
100
2815
8561
8607
-
2
14233041
14233087
+
43
0
98
47
8212
8516
-
2
14233132
14233436
+
305
0
100
305
8067
8203
-
2
14233445
14233581
+
137
0
100
137
7592
8058
-
2
14233590
14234056
+
459
0
100
467
44496
44524
+
2
14233791
14233819
+
29
0
100
29
108753
110120
-
2
14233804
14235170
+
1347
0
100
1367
7513
7582
-
2
14234066
14234135
+
70
0
100
70
6890
7482
-
2
14234166
14234758
+
593
0
100
593
86620
87815
+
2
14235165
14236354
+
1164
0
99
1196
127306
128501
-
2
14235165
14236354
+
1164
0
99
1196
87851
89655
+
2
14236391
14238193
+
1756
0
99
1804
125466
127270
-
2
14236391
14238193
+
1756
0
99
1804
89702
92998
+
2
14238240
14241537
+
3235
0
100
3299
122123
125419
-
2
14238240
14241537
+
3235
0
100
3299
93007
93374
+
2
14241546
14241912
+
363
0
100
367
121747
122114
-
2
14241546
14241912
+
363
0
100
367
115839
115857
+
2
14241647
14241664
+
18
0
100
18
93382
95184
+
2
14241924
14243724
+
1774
0
100
1802
119937
121739
-
2
14241924
14243724
+
1774
0
100
1802
86620
87295
-
2
14243722
14244396
+
675
0
100
675
127826
128501
+
2
14243722
14244396
+
675
0
100
675
108753
111564
+
2
14244391
14247207
+
2757
0
99
2817
111573
113486
+
2
14247216
14249129
+
1894
0
100
1914
113502
113762
+
2
14249146
14249405
+
260
0
100
260
101359
101393
-
2
14249372
14249405
+
34
0
100
34
84217
84408
+
2
14249404
14249594
+
187
0
99
191
130713
130904
-
2
14249404
14249594
+
187
0
99
191
84416
86241
+
2
14249603
14251427
+
1802
0
100
1826
128880
130705
-
2
14249603
14251427
+
1802
0
100
1826
122
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
129822
129873
+
2
14250435
14250485
91503
91823
+
2
14251430
123298
123618
-
2
83264
83373
+
131748
131857
61084
Stats
Ori
Score
E-val
%ID
Length
+
19
0
84
55
14251749
+
316
0
100
320
14251430
14251749
+
316
0
100
320
2
14251776
14251884
+
109
4.00E-68
100
109
-
2
14251776
14251884
+
109
1.20E-46
100
109
62137
-
2
14254866
14255918
+
1035
0
100
1055
60680
61075
-
2
14255927
14256321
+
387
0
99
395
60039
60651
-
2
14256351
14256962
+
608
0
100
612
59161
60031
-
2
14256971
14257838
+
854
0
100
870
58693
59130
-
2
14257870
14258306
+
437
0
100
437
57883
58674
-
2
14258326
14259118
+
773
0
99
793
57612
57875
-
2
14259127
14259389
+
263
0
100
263
126422
126438
+
2
14276325
14276340
+
16
0
100
16
51360
51617
-
2
14938974
14939229
+
205
3.00E-126
95
257
51286
51342
-
2
14939230
14939285
+
48
3.00E-126
96
56
37331
37518
-
2
15444308
15444495
+
134
1.20E-67
93
190
90827
90919
-
2
15756913
15757004
+
84
3.40E-37
98
92
133
303
+
2
15901774
15901943
+
139
9.40E-66
95
171
83505
83654
+
2
15950960
15951107
+
121
3.00E-59
95
149
9728
9789
-
2
16412719
16412785
+
35
3.10E-06
88
67
376
433
-
2
17996493
17996550
+
46
1.60E-14
95
58
20482
20523
+
2
17996764
17996804
+
38
1.00E-09
98
42
19151
19235
+
2
18561262
18561346
+
81
1.00E-31
99
85
81535
81647
+
2
18610761
18610873
+
109
4.20E-52
99
113
86158
86221
-
2
18762116
18762178
+
55
6.40E-20
97
63
45188
45270
+
2
19359786
19359868
+
63
1.90E-21
94
83
36638
36749
-
2
19359876
19359987
+
104
2.80E-161
98
112
36616
36678
-
2
19359987
19360049
+
63
2.70E-136
100
63
36541
36607
-
2
19360060
19360126
+
67
2.80E-161
100
67
36481
36531
-
2
19360136
19360186
+
51
2.80E-161
100
51
10168
10280
+
2
19360271
19360383
+
109
7.50E-57
99
113
44338
44384
+
2
19360504
19360551
+
32
7.50E-57
92
48
123
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
26003
26144
-
2
19361080
19361221
+
130
2.80E-161
98
142
95258
95400
-
2
19408658
19408799
+
142
4.20E-103
100
142
74477
74549
-
2
19409428
19409499
+
72
4.20E-103
100
72
54731
54798
+
2
19409879
19409945
+
67
1.00E-68
100
67
98087
98184
+
2
19410240
19410336
+
89
1.00E-68
98
97
93554
93891
+
2
20018538
20018874
+
243
6.00E-132
93
339
121230
121567
-
2
20018538
20018874
+
243
4.30E-126
93
339
82018
82143
+
2
20104613
20104733
+
77
5.00E-33
90
125
24833
24935
-
2
20800834
20800936
+
91
3.10E-39
97
103
77303
77378
+
2
20849779
20849853
+
59
2.60E-22
95
75
5443
5476
-
2
20870425
20870458
+
30
0.00088
97
34
34816
35055
+
2
21792977
21793217
+
177
1.40E-246
93
241
35062
35422
+
2
21793237
21793597
+
286
1.40E-246
95
362
21485
21540
+
2
22250879
22250934
+
40
1.10E-08
93
56
39598
39670
-
2
22307345
22307415
+
37
7.60E-14
88
73
110801
111127
-
2
22317190
22317515
+
318
2.10E-170
99
326
33275
33331
+
2
22804392
22804443
+
33
7.00E-36
89
57
33399
33503
+
2
22804470
22804572
+
73
7.00E-36
92
105
83749
83882
+
2
22853267
22853399
+
73
1.20E-30
89
133
36110
36158
-
2
23972317
23972365
+
33
2.70E-05
92
49
33215
33364
+
2
24783729
24783881
+
137
3.00E-280
97
153
33399
33577
+
2
24783916
24784094
+
175
3.00E-280
99
179
33618
33861
+
2
24784136
24784379
+
220
3.00E-280
98
244
77725
78413
-
2
24891555
24892240
+
610
0
97
690
77500
77697
-
2
24892268
24892464
+
165
0
96
197
76070
76188
+
2
26155603
26155721
+
91
2.30E-41
94
119
6846
7028
+
2
26896715
26896897
+
179
8.60E-88
99
183
24875
24946
+
2
27441692
27441762
+
56
5.10E-19
94
72
102373
102853
-
2
27604729
27605208
+
468
5.30E-261
99
480
80733
80793
+
2
27667594
27667653
+
52
3.90E-18
97
60
22124
22156
-
2
28025169
28025201
+
29
3.20E-07
97
33
33952
34021
+
2
28429351
28429420
+
42
3.50E-82
90
70
124
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
34194
34449
+
2
28429560
28429815
+
140
3.50E-82
88
260
7766
8017
-
2
29019182
29019432
+
232
3.80E-121
98
252
44496
44524
+
2
29019341
29019369
+
29
0.00036
100
29
43120
43245
+
2
29317383
29317508
+
95
4.00E-41
94
127
63872
63946
-
2
29935149
29935223
+
47
3.70E-15
91
75
1808
1980
+
2
32501863
32502036
+
154
1.40E-76
97
174
7825
7977
-
2
32639447
32639599
+
153
2.20E-73
100
153
15814
15900
+
2
33330216
33330302
+
83
8.90E-71
99
87
15980
16049
+
2
33330382
33330451
+
70
8.90E-71
100
70
33470
33551
+
2
33534505
33534586
+
54
4.00E-16
91
82
14443
14532
+
2
35130193
35130282
+
66
1.20E-211
93
90
14535
14637
+
2
35130274
35130376
+
76
1.20E-211
93
104
14643
15004
+
2
35130375
35130741
+
276
1.20E-211
94
368
47517
47957
-
2
35784625
35785065
+
293
4.40E-159
91
445
47517
47580
-
2
35785075
35785138
+
44
1.10E-11
92
64
2947
3096
+
3
81353
81502
+
99
3.40E-42
91
151
94738
94928
+
3
685792
685981
+
170
1.90E-88
97
190
39350
39392
+
3
1094624
1094666
+
35
2.90E-06
95
43
14324
14385
-
3
2311481
2311540
+
42
2.80E-09
92
62
18563
18625
-
3
2577276
2577338
-
47
1.60E-41
94
63
18650
18728
-
3
2577365
2577443
-
67
1.60E-41
96
79
19305
19352
-
3
3028197
3028244
-
44
1.60E-10
98
48
25432
25515
+
3
3425670
3425752
-
68
1.80E-24
95
84
97585
97743
+
3
4315440
4315596
-
94
3.70E-43
90
158
33400
33441
-
3
4842555
4842596
+
30
1.20E-19
93
42
33144
33235
-
3
4842764
4842856
+
38
1.20E-19
85
94
54921
55204
+
3
4991086
4991368
-
259
1.60E-156
98
283
81779
81896
-
3
5166875
5166991
-
82
5.20E-36
92
118
35598
35663
+
3
5626070
5626135
+
50
1.50E-12
94
66
35540
35582
-
3
5701299
5701341
-
35
0.0001
95
43
67008
67377
+
3
5730542
5730913
-
269
1.90E-147
93
373
125
Chloroplast
Start
Rice Chromosome
End
Ori
Name
28941
29007
-
66270
66431
18642
Stats
Start
End
Ori
Score
E-val
%ID
Length
3
5795598
5795664
+
63
1.70E-22
99
67
+
3
6128249
6128408
+
145
3.30E-88
98
161
18686
-
3
6632804
6632848
+
41
4.40E-53
98
45
18552
18625
-
3
6632866
6632939
+
63
4.40E-53
96
75
14535
14592
-
3
6750924
6750980
+
46
4.40E-53
95
58
133297
133319
-
3
7557875
7557896
+
22
4.20E-209
100
22
81804
82193
+
3
7557897
7558285
+
373
2.10E-209
99
389
132928
133317
-
3
7557897
7558285
+
373
4.20E-209
99
389
98421
98920
+
3
7935200
7935697
+
477
2.20E-271
99
501
116201
116700
-
3
7935200
7935697
+
477
9.40E-264
99
501
15625
15672
-
3
7940371
7940418
+
44
1.50E-11
98
48
37067
37121
+
3
7940414
7940468
+
47
5.70E-13
96
55
100550
100566
-
3
7954100
7954115
+
16
9.40E-264
100
16
27393
27473
+
3
7987008
7987088
+
43
3.10E-11
88
83
47709
47752
-
3
8431937
8431979
+
32
1.30E-05
93
44
22717
22794
-
3
8893880
8893956
+
47
2.20E-13
90
79
54249
54360
+
3
10113399
10113509
+
103
1.60E-48
98
111
23568
23620
+
3
10119828
10119880
+
53
2.90E-16
100
53
17971
18078
+
3
10581614
10581721
+
52
1.10E-14
87
108
59933
60031
-
3
10882101
10882198
-
94
2.40E-123
99
98
60039
60209
-
3
10882206
10882373
-
154
2.40E-123
98
170
18985
19352
+
3
10887531
10887898
-
352
2.50E-189
99
368
86623
86792
-
3
10995621
10995787
+
81
2.10E-35
87
169
103769
103794
+
3
11516778
11516802
+
18
1.30E-220
92
26
96201
96601
-
3
11518626
11519025
+
400
1.70E-225
100
400
118520
118920
+
3
11518626
11519025
+
400
1.30E-220
100
400
28120
28160
+
3
11863782
11863822
-
37
5.60E-06
98
41
18024
18080
+
3
12859172
12859229
-
30
3.60E-12
88
58
123752
123812
-
3
13620215
13620274
+
32
3.20E-56
88
60
64246
64368
-
3
13620632
13620753
+
94
3.70E-43
94
122
96815
96922
+
3
13623739
13623846
+
104
4.00E-49
99
108
118199
118306
-
3
13623739
13623846
+
104
3.20E-56
99
108
126
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
80935
81139
+
3
13624253
13624456
+
196
6.10E-104
99
204
133982
134186
-
3
13624253
13624456
+
196
1.90E-100
99
204
53426
53573
+
3
13625786
13625932
+
115
2.70E-69
95
147
20236
20434
+
3
13637442
13637640
+
191
4.10E-96
99
199
132216
132232
-
3
13689626
13689641
+
16
2.90E-100
100
16
106333
106349
-
3
13721589
13721604
+
16
1.90E-100
100
16
131083
131099
-
3
13730664
13730679
+
16
2.90E-100
100
16
117341
117357
-
3
13738319
13738334
+
16
1.90E-100
100
16
107363
107379
-
3
13887749
13887764
+
16
1.60E-206
100
16
107028
107043
+
3
13903730
13903744
+
15
0
100
15
110589
110604
+
3
13916889
13916903
+
15
0
100
15
8832
8975
-
3
13927645
13927795
+
83
1.40E-35
89
151
8797
8909
-
3
13927718
13927836
+
67
3.70E-26
89
119
103607
103622
-
3
13930980
13930994
+
15
1.60E-206
100
15
105757
105772
-
3
13931210
13931224
+
15
1.60E-206
100
15
106896
106911
+
3
13933080
13933094
+
15
0
100
15
101519
101534
-
3
13950397
13950411
+
15
1.60E-206
100
15
112803
112818
-
3
13958316
13958330
+
15
9.30E-210
100
15
116391
116406
-
3
13963063
13963077
+
15
9.30E-210
100
15
104716
104731
+
3
13963095
13963109
+
15
0
100
15
116391
116406
+
3
13963171
13963185
+
15
1.10E-113
100
15
113371
113386
+
3
13971220
13971234
+
15
0
100
15
103640
103655
+
3
13981840
13981854
+
15
0
100
15
116391
116406
+
3
14009206
14009220
+
15
1.60E-112
100
15
122845
122860
-
3
14010319
14010333
+
15
9.30E-210
100
15
114731
115438
+
3
14011403
14012111
+
685
0
99
709
100002
100390
-
3
14011403
14011792
+
378
9.30E-210
99
390
99683
100002
-
3
14011793
14012111
+
307
0
99
319
98383
99672
-
3
14012110
14013399
+
1251
0
99
1291
115449
116738
+
3
14012110
14013399
+
1251
0
99
1291
98141
98367
-
3
14013416
14013641
+
222
0
100
226
116754
116980
+
3
14013416
14013641
+
222
0
100
226
127
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
4652
4713
+
3
14263164
14263225
+
34
2.20E-06
89
62
46986
47214
+
3
14857541
14857767
+
198
1.40E-102
97
230
71112
71371
-
3
16161833
16162095
-
200
1.10E-119
94
264
56536
56712
-
3
16379897
16380068
+
128
2.00E-63
93
176
80912
81072
+
3
17479056
17479215
+
109
3.40E-65
92
161
98056
98240
-
3
17527679
17527862
+
84
3.40E-37
86
184
33618
33672
+
3
17574622
17574676
-
39
1.10E-164
93
55
33489
33576
+
3
17574722
17574809
-
72
1.10E-164
95
88
33399
33476
+
3
17574808
17574885
-
58
1.10E-164
94
78
33072
33356
+
3
17574925
17575206
-
187
1.10E-164
91
291
21520
21681
+
3
18108906
18109067
-
146
6.80E-70
98
162
47455
47839
+
3
18565283
18565666
-
344
1.80E-189
97
388
123400
123417
+
3
19863220
19863236
-
17
6.10E-253
100
17
108536
108552
+
3
19865908
19865923
-
16
6.10E-253
100
16
112245
112732
-
3
19909145
19909631
-
479
1.00E-272
100
487
69758
69950
+
3
19909629
19909821
-
189
9.10E-100
99
193
27117
27248
+
3
19912977
19913108
-
128
0
99
132
26985
27108
+
3
19913117
19913240
-
116
0
98
124
26193
26988
+
3
19913225
19914017
-
741
0
98
797
105571
106042
+
3
19930641
19931111
-
457
6.10E-253
99
473
105762
105794
-
3
19930889
19930920
-
32
2.30E-06
100
32
58077
58265
+
3
20343390
20343577
+
172
2.60E-161
98
188
58314
58454
+
3
20343627
20343766
+
140
2.60E-161
100
140
84729
84813
+
3
20938413
20938496
+
52
3.90E-18
90
84
19176
19240
+
3
21389623
21389687
+
37
1.60E-41
89
65
19269
19352
+
3
21389688
21389770
+
76
1.60E-41
98
84
12605
12660
-
3
23321904
23321959
+
36
1.80E-06
91
56
92127
92246
-
3
23613477
23613595
-
68
1.10E-42
89
120
30132
30179
+
3
23931960
23932007
+
40
3.60E-08
96
48
30144
30179
+
3
23932050
23932085
+
32
0.00066
97
36
48526
48928
+
3
24487446
24487841
-
295
1.50E-160
93
403
4979
5212
-
3
24555722
24555956
-
231
4.10E-121
100
235
128
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
76238
76511
+
3
24703566
24703838
+
257
0
99
273
76598
77384
+
3
24703924
24704709
+
755
0
99
787
78277
78413
-
3
24704754
24704889
+
128
2.00E-63
99
136
77382
77696
+
3
24704888
24705201
+
302
0
99
314
77724
78271
+
3
24705231
24705776
+
492
0
97
548
111620
111635
-
3
25150169
25150183
+
15
0
100
15
103936
103951
+
3
25152925
25152939
+
15
0.00053
100
15
116391
116406
-
3
25167407
25167421
+
15
0
100
15
129976
129993
-
3
25178651
25178667
+
17
0
100
17
104755
104770
-
3
25198388
25198402
+
15
0
100
15
106397
106502
-
3
25200272
25200376
+
105
0
100
105
106134
106389
-
3
25200385
25200639
+
243
0
99
255
105446
106144
-
3
25200638
25201333
+
652
0
98
700
105762
105794
+
3
25200987
25201018
+
32
0.00053
100
32
104191
105428
-
3
25201334
25202576
+
1187
0
99
1243
109988
110003
+
3
25201827
25201841
+
15
0.00053
100
15
114241
114256
+
3
25202480
25202494
+
15
0.00053
100
15
100865
100880
-
3
25202480
25202494
+
15
0
100
15
103904
104131
-
3
25202637
25202861
+
215
0
99
227
103196
103896
-
3
25202870
25203572
+
671
0
99
703
103056
103188
-
3
25203581
25203712
+
116
0
97
132
102748
103047
-
3
25203730
25204029
+
288
0
99
300
102748
102885
-
3
25204042
25204178
+
129
0
99
137
123825
123840
+
3
25223144
25223158
+
15
0.0016
100
15
103391
103406
-
3
25229135
25229149
+
15
0
100
15
130055
130070
+
3
25283346
25283360
+
15
0.0016
100
15
121163
121179
+
3
25283368
25283383
+
16
0.00053
100
16
129893
129908
+
3
25293359
25293373
+
15
0.00053
100
15
61944
62363
+
3
25755329
25755747
-
419
8.10E-237
100
419
2409
2465
+
3
25757635
25757691
-
38
1.60E-09
91
58
103745
103761
-
3
25945892
25945907
-
16
1.60E-107
100
16
73542
73603
-
3
25961613
25961673
-
61
5.40E-159
100
61
129
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
82425
82509
-
3
25961756
25961839
-
80
5.40E-159
99
84
132612
132696
+
3
25961756
25961839
-
80
2.20E-143
99
84
117915
117976
-
3
25961839
25961900
-
46
1.80E-55
94
62
93016
93126
-
3
25961898
25962007
-
82
2.30E-97
94
110
121995
122105
+
3
25961898
25962007
-
82
8.60E-143
94
110
122028
122047
-
3
25961956
25961974
-
19
7.50E-14
100
19
115839
115857
-
3
25961990
25962007
-
18
2.30E-39
100
18
130803
130845
+
3
25962011
25962052
-
42
2.20E-143
100
42
123778
123812
+
3
25962208
25962241
-
30
4.70E-127
97
34
70506
70658
+
3
25962335
25962486
-
140
2.50E-100
98
152
104750
104889
-
3
25962486
25962624
-
135
1.60E-107
99
139
96217
96292
+
3
25962623
25962697
-
67
2.80E-57
97
75
118829
118904
-
3
25962623
25962697
-
67
1.60E-107
97
75
63871
63966
-
3
25962750
25962844
-
87
7.70E-123
98
95
121525
121569
-
3
25962844
25962888
-
41
1.60E-107
98
45
89208
89276
-
3
25962885
25962951
-
56
5.40E-159
96
68
125845
125913
+
3
25962885
25962951
-
56
2.20E-143
96
68
109943
110009
-
3
25962955
25963020
-
62
1.70E-88
98
66
109478
109624
+
3
25963019
25963164
-
142
2.20E-143
99
146
91931
91989
-
3
25963160
25963217
-
54
5.40E-159
98
58
123132
123190
+
3
25963160
25963217
-
54
6.50E-133
98
58
92501
92592
-
3
25963217
25963307
-
87
5.40E-159
99
91
122529
122620
+
3
25963217
25963307
-
87
6.50E-133
99
91
18371
18413
-
3
25965835
25965877
-
43
1.20E-78
100
43
47749
47894
-
3
25965877
25966022
-
138
1.20E-78
99
146
45376
45421
+
3
25966026
25966071
-
46
1.50E-67
100
46
25614
25670
-
3
25966073
25966129
-
57
3.10E-60
100
57
20421
20458
-
3
25966128
25966165
-
38
2.00E-49
100
38
34468
34532
+
3
25966165
25966229
-
57
1.50E-67
97
65
40797
40850
-
3
25966322
25966375
-
42
3.10E-60
94
54
47019
47137
+
3
25966669
25966787
-
103
8.10E-77
97
119
44208
44245
-
3
25966788
25966825
-
38
3.10E-60
100
38
130
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
40318
40368
-
3
25966857
25966907
-
51
1.70E-52
100
51
26021
26067
+
3
25966907
25966953
-
39
8.10E-77
96
47
19477
19529
+
3
25967313
25967365
-
53
8.10E-77
100
53
61645
61999
+
3
26222322
26222675
-
330
8.70E-184
98
354
27257
27303
-
3
26241769
26241815
-
43
1.00E-15
98
47
42013
42215
+
3
26848645
26848847
+
203
3.90E-106
100
203
96303
97289
-
3
27560209
27561196
+
940
0
99
988
117832
118818
+
3
27560209
27561196
+
940
0
99
988
32860
33364
+
3
27563371
27563876
+
486
0
99
506
33399
33577
+
3
27563911
27564094
+
144
0
95
184
33618
34184
+
3
27564135
27564702
+
528
0
98
568
34194
34297
+
3
27564711
27564814
+
104
0
100
104
34194
34222
+
3
27565812
27565840
+
29
0
100
29
35033
35936
+
3
27565835
27566739
+
862
0
99
906
35972
36143
+
3
27566775
27566946
+
160
0
98
172
77252
77417
-
3
27797942
27798105
-
118
1.80E-57
93
166
81980
82126
+
3
27798104
27798244
-
83
1.30E-36
89
147
109098
109114
-
3
28345386
28345401
-
16
3.00E-131
100
16
82544
82866
+
3
28349675
28350000
-
168
3.00E-87
88
328
132255
132577
-
3
28349675
28350000
-
168
3.00E-131
88
328
132588
132764
-
3
28350000
28350177
-
95
3.00E-131
88
179
69398
69533
+
3
28666922
28667055
+
123
1.90E-60
98
135
7364
7467
-
3
28668632
28668734
+
96
8.30E-50
98
104
1462
1506
-
3
28722578
28722622
+
33
8.30E-50
93
45
73961
74116
-
3
28826201
28826355
-
155
1.30E-90
100
155
35798
35912
+
3
28827464
28827578
-
115
1.40E-51
100
115
60039
60433
-
3
28833882
28834269
-
338
2.50E-199
96
394
18747
18775
+
3
30309511
30309539
-
29
0.00047
100
29
26100
26179
+
3
30379203
30379279
-
44
3.80E-22
89
80
25936
26071
+
3
30379307
30379443
-
37
3.80E-22
82
137
83757
83988
-
3
31068060
31068290
-
118
1.90E-57
88
234
8681
8736
-
3
31275104
31275159
-
40
8.50E-08
93
56
131
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
53219
53317
+
3
31749883
31749980
-
94
3.70E-43
99
98
94931
98367
-
3
31750379
31753818
-
3417
0
100
3441
116754
120190
+
3
31750379
31753818
-
3417
0
100
3441
98383
98707
-
3
31753835
31754159
-
321
0
100
325
116414
116738
+
3
31753835
31754159
-
321
0
100
325
97569
98367
-
3
31754152
31754950
-
795
0
100
799
116754
117552
+
3
31754152
31754950
-
795
0
100
799
98383
99962
-
3
31754967
31756548
-
1570
0
100
1582
115159
116738
+
3
31754967
31756548
-
1570
0
100
1582
50357
50466
-
3
31757590
31757698
-
109
0
100
109
50474
52949
-
3
31757706
31760182
-
2461
0
100
2477
108172
108188
+
3
31781302
31781317
-
16
0
100
16
32805
32874
-
3
31799479
31799548
-
35
5.40E-31
87
71
32879
33008
-
3
31799579
31799704
-
59
5.40E-31
86
131
113812
113828
+
3
31804218
31804233
-
16
0
100
16
831
938
-
3
31975740
31975848
+
61
6.40E-45
89
109
698
815
-
3
31975847
31975962
+
51
6.40E-45
86
119
77372
77653
+
3
32243299
32243579
+
253
6.60E-138
98
281
106600
106794
-
3
33002281
33002474
-
194
1.10E-99
100
194
110974
110993
-
3
33048926
33048944
-
19
1.10E-99
100
19
54937
55046
-
3
33548676
33548784
+
74
3.10E-31
92
110
114366
114383
-
3
34136083
34136099
-
17
1.90E-198
100
17
93382
93528
+
3
34288764
34288909
-
126
2.90E-202
97
146
121593
121739
-
3
34288764
34288909
-
126
1.10E-198
97
146
93088
93374
+
3
34288915
34289200
-
255
2.90E-202
97
287
121747
122033
-
3
34288915
34289200
-
255
1.10E-198
97
287
11350
11432
+
3
34430262
34430344
+
79
0
99
83
11487
12304
+
3
34430401
34431218
+
798
0
99
818
12350
12398
+
3
34431220
34431268
+
41
0
96
49
100447
100632
+
3
35541563
35541750
-
176
3.50E-92
98
188
114489
114674
-
3
35541563
35541750
-
176
4.30E-137
98
188
103984
104131
-
3
35541936
35542082
-
147
4.60E-260
100
147
132
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
101114
101380
+
3
35542718
35542983
-
254
1.20E-138
99
266
113741
114007
-
3
35542718
35542983
-
254
4.60E-260
99
266
90993
91097
+
3
35543119
35543222
-
100
9.80E-47
99
104
124024
124128
-
3
35543119
35543222
-
100
4.60E-260
99
104
109886
110015
+
3
35543309
35543437
-
129
4.20E-61
100
129
107146
107286
-
3
35543434
35543573
-
136
7.10E-142
99
140
68037
68139
-
3
35543664
35543765
-
90
8.90E-41
97
102
49513
49574
+
3
35544066
35544127
-
62
2.90E-92
100
62
17145
17331
-
3
35544469
35544655
-
183
2.90E-124
99
187
17383
17456
-
3
35544715
35544788
-
74
2.90E-124
100
74
45666
45739
+
3
35544788
35544861
-
70
2.90E-92
99
74
11643
11737
-
3
35544861
35544955
-
87
8.60E-83
98
95
15414
15491
-
3
35545315
35545392
-
78
8.60E-83
100
78
15500
15535
-
3
35545401
35545436
-
36
8.60E-83
100
36
36092
36181
+
3
35545536
35545625
-
82
2.90E-92
98
90
104222
104238
+
3
35594616
35594631
-
16
4.20E-61
100
16
112063
112081
-
3
35601399
35601416
-
18
7.10E-142
100
18
134277
134292
-
3
35890776
35890790
+
15
0
100
15
133481
133496
-
3
35925945
35925959
+
15
0
100
15
132703
132719
-
3
35933029
35933044
+
16
0
100
16
84081
84408
+
3
35938380
35938706
+
311
0
99
327
130713
131040
-
3
35938380
35938706
+
311
0
99
327
84416
85636
+
3
35938715
35939929
+
1149
0
99
1221
129485
130705
-
3
35938715
35939929
+
1149
0
99
1221
107369
107384
-
3
35944257
35944271
+
15
0
100
15
103763
103781
-
3
35949121
35949138
+
18
0
100
18
107539
107554
-
3
35953523
35953537
+
15
0
100
15
116654
116669
-
3
35956259
35956273
+
15
0
100
15
116391
116406
-
3
35972986
35973000
+
15
0
100
15
124429
124445
-
3
35979647
35979662
+
16
0
100
16
101385
101400
-
3
35985040
35985054
+
15
0
100
15
108285
108301
-
3
36001392
36001407
+
16
0
100
16
133
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
128393
128408
-
3
36002354
36002368
73850
74003
-
3
36276536
71560
71691
-
3
56276
56361
+
11245
11282
29864
Stats
Ori
Score
E-val
%ID
Length
+
15
0
100
15
36276689
+
87
2.60E-98
89
155
36277018
36277147
+
119
2.60E-98
98
131
3
36277185
36277269
+
81
2.00E-35
99
85
-
3
36279585
36279622
+
30
0.0064
95
38
30015
-
3
36279683
36279834
+
132
2.60E-61
97
152
42926
43020
+
3
36279835
36279930
+
76
4.40E-31
95
96
90539
90633
-
4
251249
251341
+
90
1.30E-97
99
94
80912
81014
-
4
251376
251477
+
102
1.30E-97
100
102
128728
128744
+
4
444890
444905
+
16
1.70E-104
100
16
84426
84802
-
4
457867
458240
+
180
2.10E-94
87
380
130319
130695
+
4
457867
458240
+
180
1.70E-104
87
380
130722
130818
+
4
458258
458348
+
40
1.70E-104
85
96
18688
18831
+
4
635874
636018
+
129
5.90E-60
97
145
18953
19065
-
4
636029
636141
+
97
6.80E-42
96
113
56662
56740
-
4
899622
899699
+
58
1.00E-21
94
78
17433
17493
-
4
1085897
1085957
+
32
2.60E-05
88
64
72022
72089
+
4
2073149
2073215
+
67
4.50E-27
100
67
6349
6502
-
4
2073534
2073687
+
154
2.30E-73
100
154
5541
5718
+
4
4295052
4295229
+
143
1.30E-91
95
179
5728
5772
+
4
4295231
4295275
+
45
1.60E-85
100
45
5759
5831
+
4
4295350
4295422
+
53
1.30E-91
93
73
18768
18912
+
4
4428133
4428270
+
90
5.70E-37
90
146
25672
25705
+
4
4974377
4974410
+
30
0.0014
97
34
34974
35175
+
4
5026829
5027029
+
114
6.00E-85
89
202
35152
35286
+
4
5027033
5027167
+
71
6.00E-85
88
135
11505
11593
-
4
5027466
5027554
+
73
8.00E-56
96
89
11320
11428
-
4
5027632
5027743
+
60
8.00E-56
88
112
68334
68446
-
4
5097334
5097441
+
61
1.70E-23
89
113
74911
75141
+
4
5189557
5189786
+
146
3.80E-74
91
230
96652
96710
+
4
5807333
5807390
+
50
6.10E-17
97
58
134
Chloroplast
Start
Rice Chromosome
End
Ori
Name
4979
5051
-
81292
81667
4813
Stats
Start
End
Ori
Score
E-val
%ID
Length
4
6813748
6813820
+
49
8.00E-14
92
73
+
4
7559673
7560045
+
185
2.20E-97
87
377
4853
+
4
8902503
8902543
+
41
0
100
41
43009
43044
+
4
8904852
8904887
+
32
0
97
36
4353
4863
-
4
8918205
8918715
+
503
0
100
511
3553
4318
-
4
8918750
8919515
+
758
0
100
766
2941
3535
-
4
8919533
8920127
+
595
0
100
595
314
2932
-
4
8920136
8922754
+
2603
0
100
2619
41322
41364
+
4
8922866
8922908
+
43
0
100
43
41374
41491
+
4
8922918
8923035
+
118
0
100
118
41535
42468
+
4
8923079
8924012
+
920
0
100
936
42477
43683
+
4
8924021
8925219
+
1157
0
99
1209
43700
43898
+
4
8925236
8925434
+
199
0
100
199
43909
44411
+
4
8925445
8925945
+
495
0
100
503
44420
44883
+
4
8925954
8926417
+
457
0
100
465
7829
7857
-
4
8926030
8926058
+
29
1.30E-82
100
29
44892
45574
+
4
8926426
8927108
+
683
0
100
683
45613
45946
+
4
8927147
8927480
+
330
0
100
334
45968
46164
+
4
8927502
8927693
+
177
0
97
197
46193
46276
+
4
8927720
8927803
+
84
0
100
84
46286
46495
+
4
8927813
8928022
+
210
0
100
210
46504
47252
+
4
8928031
8928782
+
732
0
99
752
43009
43044
+
4
8932937
8932972
+
32
0
97
36
314
474
-
4
8933845
8934005
+
157
0
99
161
32100
32640
+
4
8934146
8934686
+
541
0
100
541
32674
33364
+
4
8934720
8935409
+
683
0
100
691
33399
33577
+
4
8935444
8935622
+
175
0
99
179
33618
34184
+
4
8935663
8936230
+
556
0
99
568
34194
35936
+
4
8936240
8937982
+
1739
0
100
1743
35972
36531
+
4
8938018
8938577
+
560
0
100
560
36541
36607
+
4
8938587
8938653
+
67
0
100
67
36616
41364
+
4
8938662
8943411
+
4692
0
100
4752
135
Chloroplast
Start
Rice Chromosome
End
Ori
Name
41374
41491
+
41535
42468
42477
Stats
Start
End
Ori
Score
E-val
%ID
Length
4
8943421
8943538
+
118
0
100
118
+
4
8943582
8944509
+
846
0
98
938
43683
+
4
8944518
8945716
+
1149
0
99
1209
43700
43898
+
4
8945733
8945931
+
199
0
100
199
43909
44411
+
4
8945941
8946441
+
495
0
100
503
44420
44883
+
4
8946450
8946914
+
454
0
99
466
7829
7857
-
4
8946526
8946554
+
29
0
100
29
44892
45574
+
4
8946923
8947605
+
683
0
100
683
45613
45946
+
4
8947644
8947977
+
330
0
100
334
44892
45117
-
4
8948057
8948282
+
226
0
100
226
44646
44883
-
4
8948291
8948524
+
215
0
97
239
5
1248
-
4
8948727
8949970
+
1232
0
100
1244
1
37
+
4
8949945
8949980
+
33
0.00026
97
37
43009
43044
-
4
8958154
8958189
+
32
4.90E-241
97
36
43009
43044
+
4
8981254
8981289
+
32
1.50E-05
97
36
121333
121349
+
4
8983029
8983044
+
16
3.00E-05
100
16
5287
6075
+
4
8985465
8986253
+
789
0
100
789
6106
6337
+
4
8986284
8986514
+
224
0
99
232
6346
7480
+
4
8986523
8987657
+
1127
0
100
1135
7513
7582
+
4
8987690
8987759
+
70
0
100
70
7592
8037
+
4
8987769
8988214
+
446
0
100
446
44496
44524
-
4
8988006
8988034
+
29
0
100
29
8093
8203
+
4
8988270
8988380
+
111
0
100
111
8212
8513
+
4
8988389
8988690
+
302
0
100
302
8623
10105
+
4
8988731
8990213
+
1468
0
100
1484
43009
43044
+
4
8999682
8999717
+
32
0
97
36
10330
11432
+
4
9017592
9018694
+
1103
0
100
1103
11487
13987
+
4
9018749
9021252
+
2432
0
99
2508
36195
36238
+
4
9020051
9020094
+
36
0
95
44
13997
15200
+
4
9021262
9022462
+
1188
0
100
1204
15261
15491
+
4
9022523
9022753
+
231
0
100
231
15500
15902
+
4
9022762
9023164
+
399
0
100
403
136
Chloroplast
Start
Rice Chromosome
End
Ori
Name
15980
16670
+
16679
17091
16880
Stats
Start
End
Ori
Score
E-val
%ID
Length
4
9023242
9023936
+
679
0
99
695
+
4
9023945
9024357
+
413
0
100
413
16927
-
4
9024146
9024193
+
40
0
96
48
17118
17331
+
4
9024384
9024597
+
210
0
100
214
17384
17811
+
4
9024639
9025066
+
420
0
100
428
17779
18625
+
4
9025066
9025912
+
839
0
100
847
18642
20614
+
4
9025928
9027900
+
1969
0
100
1973
20624
27108
+
4
9027910
9034394
+
6461
0
100
6485
27117
27248
+
4
9034403
9034534
+
132
0
100
132
27257
27341
+
4
9034543
9034627
+
85
0
100
85
27387
29137
+
4
9034673
9036423
+
1724
0
100
1752
29149
29503
+
4
9036435
9036789
+
355
0
100
355
29541
30253
+
4
9036827
9037539
+
713
0
100
713
31514
31555
-
4
9037578
9037619
+
42
0
100
42
43009
43044
+
4
9040282
9040317
+
32
0
97
36
1145
2000
-
4
9052053
9052909
+
846
0
100
857
87034
87815
+
4
9069761
9070536
+
754
0
99
782
127306
128087
-
4
9069761
9070536
+
754
0
99
782
87851
89655
+
4
9070573
9072375
+
1784
0
100
1804
125466
127270
-
4
9070573
9072375
+
1784
0
100
1804
89702
92998
+
4
9072422
9075719
+
3263
0
100
3299
122123
125419
-
4
9072422
9075719
+
3263
0
100
3299
93007
93374
+
4
9075729
9076095
+
355
0
99
367
121747
122114
-
4
9075729
9076095
+
355
0
99
367
122028
122047
+
4
9075796
9075814
+
19
3.00E-05
100
19
115839
115857
+
4
9075830
9075847
+
18
6.60E-06
100
18
93382
98367
+
4
9076104
9081091
+
4954
0
100
4990
116754
121739
-
4
9076104
9081091
+
4954
0
100
4990
98383
100002
+
4
9081108
9082729
+
1606
0
100
1622
114302
116738
-
4
9081108
9083547
+
2420
0
100
2440
121995
122013
+
4
9081992
9082009
+
18
6.60E-06
100
18
100002
101106
+
4
9082730
9083835
+
1098
0
100
1106
137
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
100618
100670
-
4
9083347
9083398
114451
114503
+
4
9083347
114015
114240
-
4
113502
114007
-
101114
101393
112457
Stats
Ori
Score
E-val
%ID
Length
+
44
0
96
52
9083398
+
44
5.10E-18
96
52
9083610
9083835
+
222
0
100
226
4
9083844
9084348
+
505
0
100
505
+
4
9083844
9084122
+
279
0
100
279
113486
-
4
9084365
9085393
+
1017
0
100
1029
128048
128072
-
4
9089963
9089985
+
20
0
96
24
111129
111147
+
4
9090039
9090056
+
18
0
100
18
111208
111226
+
4
9091729
9091746
+
18
0
100
18
85160
87815
+
4
9095973
9098621
+
2613
0
100
2657
127306
129961
-
4
9095973
9098621
+
2613
0
100
2657
129822
129873
+
4
9096060
9096110
+
19
0
84
55
128784
128814
+
4
9097119
9097148
+
30
0
100
30
87851
89655
+
4
9098658
9100460
+
1780
0
100
1804
125466
127270
-
4
9098658
9100460
+
1780
0
100
1804
89702
90204
+
4
9100508
9101010
+
499
0
100
503
124917
125419
-
4
9100508
9101010
+
499
0
100
503
112463
112480
+
4
9101018
9101034
+
17
0
100
17
112821
112851
+
4
9101292
9101321
+
26
0
97
30
80615
80904
+
4
9117183
9117471
+
289
0
100
289
134217
134506
-
4
9117183
9117471
+
289
0
100
289
80912
83743
+
4
9117480
9120302
+
2772
0
99
2832
131378
134209
-
4
9117480
9120302
+
2772
0
99
2832
55866
55957
-
4
9119244
9119334
+
87
2.80E-56
99
91
55807
55866
-
4
9119470
9119529
+
48
2.80E-56
95
60
83654
84408
+
4
9120221
9120965
+
691
0
98
755
130713
131467
-
4
9120221
9120965
+
691
0
98
755
84416
86225
+
4
9120974
9122782
+
1802
0
100
1810
128896
130705
-
4
9120974
9122782
+
1802
0
100
1810
129822
129873
+
4
9121806
9121856
+
19
0
84
55
89669
91898
-
4
9122797
9125025
+
2176
0
99
2232
123223
125418
+
4
9122797
9124991
+
2142
0
99
2198
138
Chloroplast
Start
Rice Chromosome
End
Ori
Name
87852
89659
-
125462
127269
84416
Stats
Start
End
Ori
Score
E-val
%ID
Length
4
9125036
9126842
+
1777
0
100
1808
+
4
9125036
9126842
+
1777
0
100
1808
87815
-
4
9126880
9130273
+
3350
0
100
3402
127306
130705
+
4
9126880
9130273
+
3350
0
100
3402
128784
128814
-
4
9128353
9128382
+
30
0
100
30
129822
129873
-
4
9129391
9129441
+
19
0
84
55
80912
84408
-
4
9130282
9133777
+
3492
0
100
3496
130713
134209
+
4
9130282
9133777
+
3492
0
100
3496
55807
55866
+
4
9131728
9131787
+
48
0
95
60
55866
55957
+
4
9131923
9132013
+
87
0
99
91
80615
80904
-
4
9133786
9134074
+
289
0
100
289
134217
134506
+
4
9133786
9134074
+
289
0
100
289
80178
80600
-
4
9134092
9134513
+
422
0
100
422
80089
80170
-
4
9134522
9134602
+
77
0
99
81
79177
80047
-
4
9134644
9135513
+
866
0
100
870
78977
79140
-
4
9135551
9135713
+
163
0
100
163
78449
78968
-
4
9135723
9136242
+
512
0
100
520
77725
78413
-
4
9136277
9136963
+
677
0
100
689
76663
77697
-
4
9137033
9138067
+
1031
0
100
1035
129478
129495
+
4
9137787
9137803
+
17
0
100
17
76238
76528
-
4
9138196
9138485
+
290
0
100
290
75987
76222
-
4
9138501
9138735
+
235
0
100
235
75888
75970
-
4
9138752
9138833
+
82
0
100
82
74585
75875
-
4
9138846
9140135
+
1290
0
100
1290
74282
74549
-
4
9140172
9140438
+
267
0
100
267
71786
74265
-
4
9140456
9142938
+
2442
0
100
2486
71469
71750
-
4
9142975
9143255
+
277
0
100
281
70495
71371
-
4
9143353
9144228
+
876
0
100
876
108230
108305
+
4
9144287
9144361
+
71
4.10E-35
99
75
85282
87815
+
4
9144411
9146938
+
2491
0
100
2535
127306
129839
-
4
9144411
9146938
+
2491
0
100
2535
128784
128814
+
4
9145436
9145465
+
30
0
100
30
139
Chloroplast
Start
Rice Chromosome
End
Ori
Name
87851
89655
+
125466
127270
89702
Stats
Start
End
Ori
Score
E-val
%ID
Length
4
9146975
9148777
+
1788
0
100
1804
-
4
9146975
9148777
+
1788
0
100
1804
92998
+
4
9148825
9152122
+
3271
0
100
3299
122123
125419
-
4
9148825
9152122
+
3271
0
100
3299
93007
93374
+
4
9152132
9152498
+
355
0
99
367
121747
122114
-
4
9152132
9152498
+
355
0
99
367
122028
122047
+
4
9152199
9152217
+
19
3.10E-27
100
19
115839
115857
+
4
9152233
9152250
+
18
6.10E-29
100
18
93382
93451
+
4
9152507
9152575
+
69
0
100
69
121670
121739
-
4
9152507
9152575
+
69
0
100
69
126422
126438
-
4
9161623
9161638
+
16
0
100
16
86712
87815
+
4
9177717
9178814
+
1076
0
99
1104
127306
128409
-
4
9177717
9178814
+
1076
0
99
1104
87851
89655
+
4
9178851
9180653
+
1788
0
100
1804
125466
127270
-
4
9178851
9180653
+
1788
0
100
1804
89702
92998
+
4
9180700
9183997
+
3263
0
100
3299
122123
125419
-
4
9180700
9183997
+
3263
0
100
3299
93007
93374
+
4
9184009
9184375
+
355
0
99
367
121747
122114
-
4
9184009
9184375
+
355
0
99
367
122028
122047
+
4
9184076
9184094
+
19
6.10E-29
100
19
115839
115857
+
4
9184110
9184127
+
18
2.50E-26
100
18
93382
98367
+
4
9184384
9189365
+
4907
0
100
4991
116754
121739
-
4
9184384
9189365
+
4907
0
100
4991
98383
99271
+
4
9189382
9190272
+
879
0
100
891
115850
116738
-
4
9189382
9190272
+
879
0
100
891
49511
49801
-
4
9526664
9526956
+
273
3.10E-264
98
293
49286
49502
-
4
9526969
9527185
+
217
3.10E-264
100
217
87267
87572
-
4
9672447
9672745
+
273
8.10E-150
97
305
127549
127611
+
4
9672447
9672508
+
62
1.10E-149
100
62
127613
127854
+
4
9672505
9672745
+
233
1.10E-149
99
241
25573
25604
-
4
10033016
10033047
+
32
0.0042
100
32
17684
18506
-
4
10881099
10881924
+
755
0
98
827
140
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
15263
15326
-
4
10881928
10881991
14996
15219
-
4
10882035
21186
21385
-
4
20988
21160
-
80297
80402
113199
Stats
Ori
Score
E-val
%ID
Length
+
64
0
100
64
10882257
+
212
0
99
224
11117281
11117482
+
139
2.70E-125
92
203
4
11117487
11117662
+
120
2.70E-125
92
176
-
4
11634187
11634291
+
89
3.50E-40
96
105
113486
+
4
11913663
11913948
+
247
2.00E-145
97
287
113502
113547
+
4
11913966
11914010
+
41
2.00E-145
98
45
3316
3352
+
4
13217813
13217849
+
33
2.50E-05
97
37
48153
48485
+
4
13435539
13435872
+
286
2.80E-155
96
334
18650
18731
+
4
13661548
13661629
+
70
4.90E-37
96
82
18730
18769
+
4
13661621
13661660
+
32
4.90E-37
95
40
91892
91982
+
4
13807852
13807941
+
70
7.30E-29
94
90
49286
49502
-
4
13825531
13825747
-
209
1.60E-263
99
217
49511
49801
-
4
13825757
13826049
-
281
1.60E-263
99
293
87267
87572
+
4
13970505
13970803
+
273
8.00E-150
97
305
127613
127854
-
4
13970505
13970745
+
233
1.90E-151
99
241
127549
127611
-
4
13970742
13970803
+
62
1.90E-151
100
62
81825
82135
+
4
14189769
14190078
+
209
1.10E-111
92
313
132986
133296
-
4
14189769
14190078
+
209
2.30E-109
92
313
65719
65797
+
4
14698778
14698860
+
59
2.60E-22
93
83
24100
24235
-
4
15081254
15081386
+
87
8.70E-34
91
139
23937
24171
-
4
15081317
15081543
+
136
5.00E-62
89
236
18586
18621
-
4
16219625
16219660
+
32
0.00024
97
36
94222
94330
-
4
16825233
16825341
+
85
8.50E-38
95
109
57887
58025
+
4
17520818
17520955
+
90
7.70E-83
91
138
58048
58166
+
4
17520955
17521070
+
90
7.70E-83
94
118
29907
29935
-
4
17824189
17824217
+
29
0.0031
100
29
71970
72288
+
4
18018159
18018476
+
278
8.40E-153
97
318
35275
35369
+
4
18076370
18076463
+
37
1.70E-06
85
97
43009
43044
+
4
18755740
18755775
+
32
0.00012
97
36
26472
26757
-
4
18814630
18814916
+
232
3.60E-177
95
288
26315
26453
-
4
18814916
18815054
+
115
3.60E-177
96
139
141
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
85472
87815
+
4
18910557
18912891
+
2229
0
99
2345
127306
129649
-
4
18910557
18912891
+
2229
0
99
2345
128784
128814
+
4
18911390
18911419
+
30
0.0043
100
30
87851
89655
+
4
18912928
18914730
+
1724
0
99
1804
125466
127270
-
4
18912928
18914730
+
1724
0
99
1804
89702
90619
+
4
18914775
18915693
+
872
0
99
920
124502
125419
-
4
18914775
18915693
+
872
0
99
920
101953
101968
-
4
18914957
18914971
+
15
0
100
15
103447
103462
-
4
18921408
18921422
+
15
0
100
15
103547
103563
-
4
18946561
18946576
+
16
0
100
16
100322
100337
-
4
18950663
18950677
+
15
0
100
15
126718
126736
-
4
18964479
18964496
+
18
0
100
18
14863
15128
+
4
19132621
19132886
+
88
4.50E-36
83
272
8093
8200
+
4
19139819
19139927
+
38
6.00E-17
84
110
34519
34752
+
4
19523456
19523691
+
128
3.70E-74
88
240
34784
34873
+
4
19523697
19523790
+
42
3.70E-74
86
94
72963
73042
-
4
19765443
19765523
+
53
7.40E-105
91
81
72724
72945
-
4
19765525
19765746
+
164
7.40E-105
93
224
13247
13326
-
4
20050725
20050802
+
45
3.40E-11
89
81
20887
20986
+
4
20349431
20349530
+
72
1.10E-29
93
100
47455
47839
+
4
20628579
20628965
+
355
1.30E-193
98
387
5674
5857
-
4
21379405
21379587
+
124
1.50E-57
92
184
84680
84821
+
4
22077590
22077731
+
62
4.30E-24
86
142
21173
21356
+
4
22169158
22169341
+
111
2.30E-48
90
187
54178
54312
-
4
22326395
22326528
+
82
5.20E-36
90
134
19381
19442
+
4
22447039
22447100
+
50
1.10E-15
95
62
19380
19672
+
4
22447109
22447401
+
233
6.40E-124
95
293
82538
82657
+
4
22630188
22630306
+
87
5.40E-39
93
119
38382
38427
+
4
22792889
22792934
+
42
3.50E-12
98
46
6808
6890
+
4
23264714
23264796
+
83
0
100
83
20624
21036
-
4
23268704
23269116
+
397
0
99
413
20301
20614
-
4
23269126
23269439
+
306
0
99
314
142
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
3148
3535
+
4
23269440
23269827
+
380
0
99
388
3553
4316
+
4
23269845
23270607
+
756
0
100
764
4353
4725
+
4
23270644
23271016
+
369
0
100
373
4788
5422
+
4
23271029
23271665
+
609
0
99
637
16
490
-
4
23277921
23278395
+
455
0
99
475
8623
9521
-
4
23282583
23283480
+
868
0
99
900
26207
26634
-
4
23283483
23283910
+
424
7.10E-232
100
428
49365
49502
+
4
23283908
23284045
+
130
0
99
138
49511
50000
+
4
23284054
23284544
+
467
0
99
491
102944
102960
-
4
23404438
23404453
+
16
0
100
16
112323
113486
+
4
23417586
23418745
+
1112
0
99
1164
113502
113961
+
4
23418762
23419220
+
447
0
99
459
101114
101393
-
4
23418988
23419266
+
271
0
99
279
100002
101106
-
4
23419275
23420380
+
1074
0
99
1106
114016
116057
+
4
23419276
23421318
+
1983
0
99
2043
114451
114503
-
4
23419712
23419763
+
44
9.70E-184
96
52
100618
100670
+
4
23419712
23419763
+
44
0
96
52
99064
100002
-
4
23420381
23421318
+
910
0
99
938
121995
122013
-
4
23421101
23421118
+
18
1.10E-167
100
18
91822
92555
-
4
23424571
23425303
+
701
0
99
733
122566
123299
+
4
23424571
23425303
+
701
0
99
733
84018
84408
+
4
23428306
23428695
+
382
0
99
390
130713
131103
-
4
23428306
23428695
+
382
0
99
390
84416
84590
+
4
23428703
23428876
+
162
0
98
174
130531
130705
-
4
23428703
23428876
+
162
0
98
174
84894
87235
+
4
23428876
23431215
+
2247
0
99
2343
127886
130227
-
4
23428876
23431215
+
2247
0
99
2343
129822
129873
+
4
23429230
23429280
+
19
0
84
55
128784
128814
+
4
23430289
23430318
+
26
0
97
30
87230
87396
+
4
23434362
23434527
+
166
0
100
166
127725
127891
-
4
23434362
23434527
+
166
0
100
166
80615
80903
+
4
23435022
23435309
+
284
0
100
288
143
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
134218
134506
-
4
23435022
23435309
+
284
0
100
288
80912
83865
+
4
23435319
23438270
+
2857
0
99
2953
131256
134209
-
4
23435319
23438270
+
2857
0
99
2953
55866
55957
-
4
23437082
23437172
+
83
0
98
91
55807
55866
-
4
23437308
23437367
+
48
0
95
60
97037
97554
-
4
23438276
23438794
+
492
0
99
520
117567
118084
+
4
23438276
23438794
+
492
0
99
520
109030
109355
-
4
23438792
23439116
+
309
0
99
325
108480
108500
-
4
23439127
23439146
+
20
0
100
20
50002
50308
+
4
23441149
23441454
+
282
3.50E-155
98
306
133017
133034
+
4
23441462
23441478
+
17
0
100
17
115534
115551
+
4
23486430
23486446
+
17
0
100
17
105843
105859
-
4
23490127
23490142
+
16
0
100
16
2976
3387
+
4
23767741
23768152
+
217
1.90E-116
88
417
34799
34846
+
4
23955485
23955532
+
36
1.40E-07
94
48
22709
22818
+
4
24933513
24933622
+
94
7.20E-41
96
110
95665
95772
-
4
24977082
24977188
+
83
1.30E-36
94
107
30981
31182
-
4
25228436
25228639
+
129
3.40E-60
91
205
87397
87481
+
4
25448083
25448166
+
68
7.40E-90
95
84
87476
87559
+
4
25448168
25448249
+
71
7.40E-90
96
83
96770
96868
+
4
25469247
25469345
+
71
7.40E-90
93
99
3145
3225
+
4
25727295
25727374
+
33
0.0011
85
81
64575
64698
-
4
25816945
25817067
+
69
1.20E-74
89
125
64396
64540
-
4
25817100
25817247
+
97
1.20E-74
91
149
86761
86818
-
4
25874144
25874199
+
53
1.00E-18
98
57
48211
48325
+
4
25973650
25973766
+
57
8.60E-45
87
117
48345
48461
+
4
25973765
25973884
+
65
8.60E-45
88
121
23945
24332
+
4
27133310
27133697
+
388
2.80E-213
100
388
57195
57470
-
4
27212156
27212428
+
136
3.50E-68
87
280
99566
99621
+
4
30094839
30094893
+
55
6.40E-20
100
55
32069
32202
-
4
32431757
32431890
+
122
4.60E-57
98
134
116163
116181
+
4
32660453
32660470
+
18
1.50E-98
100
18
144
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
122359
122392
+
4
32679766
32679798
+
29
1.50E-98
97
33
122462
122536
+
4
32679915
32679987
+
32
1.50E-98
86
76
122632
122701
+
4
32680083
32680151
+
25
1.50E-98
84
69
122754
122817
+
4
32680276
32680338
+
20
1.50E-98
83
64
100865
100881
+
4
32706344
32706359
+
16
5.70E-71
100
16
92127
92231
-
4
32708170
32708273
+
69
8.20E-50
91
105
122890
122994
+
4
32708170
32708273
+
69
1.50E-98
91
105
123337
123383
+
4
32708614
32708659
+
30
1.50E-98
91
46
91571
91657
-
4
32708743
32708828
+
55
8.20E-50
91
87
123464
123550
+
4
32708743
32708828
+
55
1.50E-98
91
87
123712
123737
+
4
32708959
32708983
+
21
1.50E-98
96
25
123752
123812
+
4
32709121
32709180
+
32
1.50E-98
88
60
130887
130911
+
4
32709663
32709686
+
20
1.50E-98
96
24
83363
83447
-
4
33423539
33423624
+
50
6.10E-17
90
86
26727
26921
-
4
33865742
33865935
+
179
1.70E-89
98
195
26640
26720
-
4
33865742
33865821
+
37
1.40E-07
86
81
26704
26814
-
4
33865806
33865916
+
47
8.30E-15
86
111
90626
90707
+
4
34658405
34658487
+
63
1.10E-24
94
83
37874
41364
+
5
373694
377184
+
3445
0
100
3493
41374
41491
+
5
377194
377311
+
118
0
100
118
126
244
+
5
399718
399835
+
60
5.20E-22
88
120
25374
25507
+
5
690791
690925
+
99
1.90E-42
93
135
90010
92601
-
5
893209
895798
+
2522
0
99
2594
122520
125111
+
5
893209
895798
+
2522
0
99
2594
126860
126880
+
5
945689
945707
+
16
0
95
20
128059
128075
+
5
966014
966029
+
16
0
100
16
87913
88072
-
5
1226367
1226521
+
72
4.80E-30
86
160
43189
43322
+
5
2026985
2027119
+
65
7.90E-24
87
137
22955
22995
-
5
2311547
2311586
+
29
5.00E-05
93
41
81472
81599
+
5
2418512
2418638
+
83
1.40E-51
91
127
3575
3631
-
5
2501013
2501069
+
53
2.40E-16
98
57
145
Chloroplast
Start
Rice Chromosome
End
Ori
Name
83505
83796
+
77363
77564
77268
Stats
Start
End
Ori
Score
E-val
%ID
Length
5
2902492
2902783
+
171
4.80E-89
89
295
-
5
3074369
3074569
+
201
6.50E-107
100
201
77548
+
5
3147467
3147743
+
148
2.40E-101
88
280
77557
77652
+
5
3147742
3147839
+
63
2.40E-101
91
99
88980
89045
+
5
3204084
3204148
+
49
2.40E-16
94
65
97612
97799
+
5
3647445
3647632
+
117
7.30E-57
90
189
46739
46825
-
5
4775308
4775394
+
55
6.50E-19
91
87
82341
82438
+
5
4826279
4826375
+
81
2.00E-35
96
97
29363
29495
+
5
5004167
5004298
+
102
1.80E-49
94
134
13369
13426
+
5
5632970
5633029
+
41
8.60E-10
92
61
13369
13426
+
5
5649492
5649551
+
41
8.60E-10
92
61
87926
87994
-
5
6649504
6649571
+
68
1.10E-27
100
68
24295
24347
+
5
7973921
7973973
+
37
3.30E-07
92
53
24320
24402
+
5
7973976
7974058
+
44
9.80E-11
88
84
89475
89653
+
5
8014205
8014385
+
149
6.20E-76
96
181
8345
8513
+
5
8658835
8659002
+
75
5.40E-33
86
171
17707
17739
-
5
9043006
9043038
+
33
4.40E-07
100
33
85048
85119
+
5
9141950
9142020
+
71
1.90E-29
100
71
57800
57861
-
5
10706588
10706648
+
49
2.40E-16
95
61
23871
23924
+
5
10718137
10718190
+
42
9.60E-196
94
54
23937
24425
+
5
10727034
10727520
+
327
9.60E-196
92
495
29611
29686
+
5
11532509
11532584
+
48
1.70E-24
91
76
29739
29780
+
5
11532607
11532648
+
34
1.70E-24
95
42
37425
37543
-
5
12714692
12714810
+
119
2.00E-54
100
119
28148
29137
+
5
12777716
12778704
+
962
0
99
990
29149
29503
+
5
12778715
12779069
+
347
0
99
355
29541
29593
+
5
12779107
12779159
+
53
0
100
53
18973
20614
+
5
12779157
12780798
+
1606
0
99
1642
9562
11432
+
5
12799391
12801262
+
1828
0
99
1872
11487
12066
+
5
12801317
12801896
+
576
0
100
580
21083
23944
+
5
12801914
12804779
+
2806
0
99
2866
74628
75875
+
5
12808945
12810191
+
1239
0
100
1247
146
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
75987
76222
+
5
12810304
12810538
+
235
0
100
235
76238
76511
+
5
12810555
12810827
+
273
0
100
273
76597
77696
+
5
12810914
12812013
+
1096
0
100
1100
77724
78413
+
5
12812042
12812729
+
678
0
100
690
78449
78968
+
5
12812761
12813280
+
516
0
100
520
78977
79140
+
5
12813290
12813452
+
163
0
100
163
79177
79509
+
5
12813490
12813821
+
328
0
100
332
79567
79856
+
5
12813880
12814168
+
289
0
100
289
120949
120965
+
5
12864309
12864324
+
16
0
100
16
95611
96398
-
5
12880327
12881115
+
741
0
98
789
118723
119510
+
5
12880327
12881115
+
741
0
98
789
93382
95620
-
5
12881359
12883595
+
2174
0
99
2238
119501
121739
+
5
12881359
12883595
+
2174
0
99
2238
93007
93374
-
5
12883608
12883974
+
351
0
99
367
121747
122114
+
5
12883608
12883974
+
351
0
99
367
91409
92998
-
5
12883983
12885571
+
1553
0
99
1589
122123
123712
+
5
12883983
12885571
+
1553
0
99
1589
89669
91414
-
5
12896978
12898724
+
1693
0
99
1749
123707
125418
+
5
12896978
12898690
+
1659
0
99
1715
89511
89659
-
5
12898734
12898881
+
148
0
100
148
125462
125610
+
5
12898734
12898881
+
148
0
100
148
84416
87719
-
5
12904274
12907570
+
3222
0
99
3306
127402
130705
+
5
12904274
12907570
+
3222
0
99
3306
84256
84408
-
5
12907579
12907730
+
148
0
99
152
130713
130865
+
5
12907579
12907730
+
148
0
99
152
83874
84256
-
5
12907731
12908112
+
374
5.30E-210
99
382
130865
131247
+
5
12907731
12908112
+
374
3.70E-210
99
382
16294
16360
-
5
13770137
13770203
+
67
2.00E-22
100
67
4783
4967
+
5
14267510
14267699
+
88
6.30E-39
86
192
93094
93326
-
5
14419739
14419969
+
196
6.90E-182
96
232
121795
122027
+
5
14419739
14419969
+
196
1.30E-179
96
232
93007
93073
-
5
14419977
14420042
+
58
6.90E-182
97
66
147
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
122048
122114
+
5
14419977
14420042
+
58
1.30E-179
97
66
92879
92998
-
5
14420056
14420174
+
111
6.90E-182
98
119
122123
122242
+
5
14420056
14420174
+
111
1.30E-179
98
119
9114
9181
-
5
14910514
14910581
+
45
4.00E-11
91
69
47116
47170
+
5
15612100
15612154
+
31
3.00E-05
89
55
47116
47170
-
5
15658726
15658780
+
31
4.30E-06
89
55
99935
100000
+
5
16251783
16251847
+
54
2.50E-19
95
66
20271
20328
-
5
16325842
16325899
+
30
0.0013
88
58
40895
40930
+
5
16681606
16681641
+
32
7.40E-05
97
36
103221
103423
-
5
17357581
17357784
+
164
3.10E-109
95
204
103090
103186
-
5
17357803
17357900
+
63
3.10E-109
91
99
21159
21263
-
5
18340918
18341022
+
101
1.50E-42
99
105
26919
26963
+
5
18927895
18927939
+
41
5.10E-09
98
45
16618
16670
+
5
19217404
19217456
+
53
1.40E-26
100
53
16679
16712
+
5
19217465
19217498
+
34
1.40E-26
100
34
58138
58215
-
5
19322694
19322770
+
77
5.00E-33
100
77
68043
68134
+
5
19323136
19323226
+
83
9.30E-66
98
91
91589
91661
+
5
19323227
19323298
+
68
9.30E-66
99
72
79177
79559
-
5
19604575
19604955
+
350
0
98
382
78977
79140
-
5
19604990
19605152
+
159
0
99
163
78449
78968
-
5
19605160
19605679
+
485
0
98
521
77725
78413
-
5
19605707
19606393
+
638
0
98
690
76685
77697
-
5
19606423
19607435
+
943
0
98
1015
76632
76684
-
5
19607416
19607467
+
52
0
100
52
76238
76528
-
5
19607570
19607859
+
274
0
99
290
76134
76220
-
5
19607877
19607962
+
86
0
100
86
66890
66951
+
5
19811678
19811738
+
57
4.10E-21
98
61
32457
32521
-
5
20186279
20186342
+
41
1.30E-13
91
65
65700
65771
-
5
20291370
20291440
+
55
6.40E-20
94
71
51954
53330
+
5
20888563
20889937
+
1340
0
99
1376
53424
53871
+
5
20890032
20890478
+
405
0
98
449
53859
53919
+
5
20890481
20890539
+
56
0
98
60
148
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
53918
53993
+
5
20890521
20890594
54010
55047
+
5
20890613
101412
101442
+
5
101494
101690
+
101702
101770
111750
Stats
Ori
Score
E-val
%ID
Length
+
67
0
97
75
20891646
+
989
0
99
1037
20891646
20891675
+
22
8.90E-121
93
30
5
20891728
20891923
+
180
8.90E-121
98
196
+
5
20891935
20892003
+
65
8.90E-121
99
69
111770
+
5
20894370
20894388
+
16
8.90E-121
95
20
37070
37147
+
5
23127261
23127336
+
44
7.40E-21
89
80
37211
37292
+
5
23127532
23127612
+
31
7.40E-21
84
83
4357
4402
-
5
24271033
24271078
+
46
2.70E-19
100
46
4291
4318
-
5
24271119
24271146
+
28
2.70E-19
100
28
46888
47167
-
5
24302925
24303200
+
105
4.40E-45
84
285
86559
86634
+
5
25302499
25302573
+
56
1.60E-20
93
76
23792
23835
+
5
25375096
25375139
+
40
8.20E-09
98
44
20732
20812
+
5
29188744
29188824
+
73
4.10E-27
98
81
74282
74547
-
5
29363534
29363798
+
253
4.00E-141
99
265
76597
76688
+
5
29435279
29435368
+
79
3.20E-34
97
91
48055
49273
-
6
12745719
12746936
+
1155
0
99
1219
49511
50000
-
6
12744988
12745480
+
469
0
99
493
8623
8820
+
6
449621
449819
+
187
2.10E-94
98
199
51009
52540
+
6
1094075
1095606
+
1473
0
99
1533
52534
52692
+
6
1106818
1106975
+
146
0
98
158
52683
52749
+
6
1107048
1107112
+
58
0
97
66
14442
14486
-
6
1556081
1556125
+
29
0.0053
91
45
10669
10763
+
6
2099314
2099405
-
51
7.70E-22
88
95
7989
8058
-
6
2544487
2544551
+
42
1.00E-09
90
70
91275
91373
-
6
2577794
2577891
+
50
6.10E-17
88
98
36756
36808
+
6
3782402
3782454
+
53
1.20E-14
100
53
7592
7780
-
6
4004983
4005171
+
177
6.60E-298
98
189
7531
7582
-
6
4005180
4005231
+
44
6.60E-298
96
52
7513
7541
-
6
4005231
4005259
+
29
5.10E-289
100
29
7126
7481
-
6
4005291
4005644
+
332
6.60E-298
98
356
149
Chloroplast
Start
Rice Chromosome
End
Ori
Name
34304
34378
-
32344
32557
32255
Stats
Start
End
Ori
Score
E-val
%ID
Length
6
4693313
4693387
+
55
5.90E-18
93
75
-
6
5858043
5858261
+
103
1.50E-65
87
223
32347
-
6
5858265
5858354
+
53
1.50E-65
89
93
44546
44587
-
6
5985042
5985083
+
34
7.30E-06
95
42
81967
82058
+
6
6626166
6626256
+
83
1.30E-36
98
91
7306
7482
-
6
6686912
6687088
+
157
2.20E-79
97
177
84697
84845
+
6
7000748
7000898
+
128
2.00E-63
96
152
130276
130424
-
6
7000748
7000898
+
128
1.80E-60
96
152
84843
85153
+
6
7000843
7001157
+
275
5.20E-151
97
315
129968
130278
-
6
7000843
7001157
+
275
2.40E-147
97
315
116092
116108
-
6
7027358
7027373
+
16
2.40E-147
100
16
19419
19680
+
6
7433476
7433736
+
176
1.40E-93
92
264
9033
9145
-
6
8287312
8287424
+
58
4.70E-20
88
114
59879
60031
+
6
8884496
8884647
+
140
5.50E-80
98
152
48748
48868
-
6
9347185
9347305
+
101
1.10E-118
96
121
23841
23932
-
6
9347936
9348027
+
88
1.10E-118
99
92
88270
88360
-
6
9349785
9349874
+
86
2.20E-38
99
90
19955
20059
+
6
9349872
9349976
+
101
2.40E-54
99
105
20624
20692
-
6
9351068
9351136
+
69
1.10E-118
100
69
251
388
+
6
9351164
9351301
+
134
7.10E-75
99
138
32064
32136
+
6
9374779
9374850
+
37
7.10E-75
88
73
32981
33364
+
6
9744242
9744626
+
353
3.20E-211
98
385
33399
33452
+
6
9744661
9744714
+
50
3.20E-211
98
54
49190
49224
-
6
9932376
9932410
+
31
6.80E-05
97
35
29065
29130
+
6
10415113
10415178
+
58
3.80E-18
97
66
45987
46089
+
6
11346632
11346734
+
99
6.00E-43
99
103
47455
47839
-
6
11779681
11780065
+
340
1.00E-184
97
388
50474
51272
-
6
12743717
12744512
+
744
0
98
800
50002
50466
-
6
12744521
12744987
+
419
0
97
467
49286
49502
-
6
12745493
12745710
+
214
0
100
218
43305
43342
-
6
13364417
13364454
+
38
8.90E-40
100
38
43199
43295
-
6
13364454
13364550
+
73
8.90E-40
94
97
150
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
94004
94195
-
6
13409448
13409637
+
147
9.70E-75
94
191
23757
24190
-
6
13473367
13473800
+
291
2.80E-156
92
435
3091
3148
-
6
13651869
13651926
+
42
3.50E-11
93
58
3406
3455
+
6
13912720
13912769
+
46
1.40E-11
98
50
52676
52730
+
6
14005159
14005212
+
50
6.10E-17
98
54
119703
119719
-
6
14502692
14502707
+
16
2.00E-63
100
16
103800
103821
-
6
14508741
14508760
+
17
6.60E-12
95
21
129764
129780
-
6
14527368
14527383
+
16
2.00E-63
100
16
109430
109446
-
6
14543230
14543245
+
16
2.00E-63
100
16
23445
23512
+
6
14544412
14544478
+
60
1.70E-21
97
68
89222
89298
-
6
14544505
14544580
+
64
1.10E-87
96
76
125823
125899
+
6
14544505
14544580
+
64
8.90E-91
96
76
69112
69206
-
6
14544580
14544673
+
82
8.90E-63
97
94
84641
84758
+
6
14544816
14544932
+
98
1.50E-45
96
118
130363
130480
-
6
14544816
14544932
+
98
5.60E-112
96
118
107502
107633
-
6
14544930
14545060
+
107
5.60E-112
95
131
101728
101781
-
6
14547704
14547759
+
44
5.60E-112
95
56
3163
3233
+
6
14547935
14548005
+
59
7.40E-73
96
71
3223
3357
+
6
14548001
14548136
+
104
7.40E-73
94
136
112125
112221
-
6
14548135
14548230
+
92
2.10E-87
99
96
87440
87584
-
6
14548233
14548376
+
124
1.10E-87
97
144
127537
127681
+
6
14548233
14548376
+
124
8.90E-91
97
144
127674
127703
+
6
14548379
14548407
+
25
8.90E-91
97
29
114974
115179
+
6
15795565
15795770
+
198
1.50E-99
99
206
100002
100147
-
6
15795565
15795710
+
138
3.20E-67
99
146
99942
100002
-
6
15795711
15795770
+
60
6.70E-23
100
60
43980
44066
+
6
15866884
15866968
+
32
1.00E-05
84
88
76406
76511
+
6
16374233
16374337
+
105
1.00E-49
100
105
8123
8187
-
6
16966360
16966425
+
39
7.70E-07
90
67
39620
39661
-
6
17148991
17149032
+
42
1.20E-09
100
42
94016
94132
+
6
17970176
17970291
+
100
9.80E-47
97
116
105755
105772
+
6
18804007
18804023
+
17
0
100
17
151
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
104578
104596
+
6
18817200
18817217
114348
114363
+
6
18830224
105516
105532
+
6
108812
108827
+
109979
109994
108812
Stats
Ori
Score
E-val
%ID
Length
+
18
0
100
18
18830238
+
15
0
100
15
18862690
18862705
+
16
0
100
16
6
18887544
18887558
+
15
0
100
15
+
6
18892339
18892353
+
15
0
100
15
108827
+
6
18896521
18896535
+
15
0
100
15
122073
122088
+
6
18902803
18902817
+
15
1.80E-303
100
15
112970
112985
+
6
18931083
18931097
+
15
0
100
15
93382
93530
-
6
18948589
18948736
+
132
0
97
148
121591
121739
+
6
18948589
18948736
+
132
0
97
148
120494
120510
+
6
18948589
18948604
+
16
0
100
16
93007
93374
-
6
18948749
18949113
+
327
0
97
367
121747
122114
+
6
18948749
18949113
+
327
0
97
367
92410
92998
-
6
18949134
18949721
+
544
0
98
588
122123
122711
+
6
18949134
18949721
+
544
0
98
588
70466
70549
-
6
19860654
19860736
+
67
5.30E-115
95
83
70262
70467
-
6
19862541
19862745
+
167
5.30E-115
95
207
44980
45024
-
6
20401682
20401727
+
30
4.40E-06
91
46
83335
83426
-
6
20505976
20506066
+
71
1.90E-29
95
91
98615
98768
-
6
20890028
20890180
+
103
1.60E-48
92
155
4062
4316
+
6
21245255
21245510
+
221
7.10E-153
97
257
4353
4435
+
6
21245547
21245629
+
83
7.10E-153
100
83
86352
86412
+
6
21306320
21306379
+
52
3.90E-18
97
60
126671
126732
+
6
21595592
21595652
+
41
2.60E-102
92
61
126716
126772
+
6
21596073
21596125
+
36
3.20E-98
91
56
88095
88352
-
6
21596408
21596663
+
173
5.20E-103
92
257
126769
127026
+
6
21596408
21596663
+
173
2.60E-102
92
257
127126
127142
+
6
21596678
21596693
+
16
2.20E-99
100
16
127123
127142
+
6
21596756
21596774
+
19
2.60E-102
100
19
8220
8415
-
6
22087267
22087463
+
181
5.00E-91
98
197
19363
19419
-
6
22893287
22893344
+
35
2.50E-06
90
59
38560
38611
-
6
23197497
23197548
+
40
4.90E-12
94
52
152
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
49919
50000
-
6
23547959
23548040
+
82
1.90E-34
100
82
79177
79404
-
6
23562362
23562588
+
227
0
100
227
78977
79140
-
6
23562623
23562785
+
159
0
99
163
78449
78968
-
6
23562793
23563312
+
500
0
99
520
77725
78413
-
6
23563340
23564020
+
649
0
99
689
76632
77697
-
6
23564049
23565114
+
1038
0
99
1066
76238
76528
-
6
23565215
23565504
+
278
0
99
290
75987
76222
-
6
23565520
23565754
+
231
0
100
235
75888
75970
-
6
23565771
23565852
+
82
0
100
82
74585
75875
-
6
23565866
23567155
+
1246
0
99
1290
74282
74549
-
6
23567192
23567458
+
263
0
100
267
72078
74265
-
6
23567476
23569663
+
2131
0
99
2191
71786
72099
-
6
23569664
23569978
+
292
0
98
316
71469
71750
-
6
23570015
23570295
+
281
0
100
281
69541
71371
-
6
23570394
23572223
+
1757
0
99
1833
65618
69533
-
6
23572232
23576146
+
3806
0
99
3918
63780
65608
-
6
23576156
23577983
+
1794
0
100
1830
63515
63772
-
6
23577992
23578249
+
250
0
99
258
63380
63507
-
6
23578257
23578383
+
127
0
100
127
63066
63371
-
6
23578384
23578688
+
301
0
100
305
61083
63058
-
6
23578697
23580671
+
1960
0
100
1976
60680
61075
-
6
23580680
23581079
+
372
0
98
400
60039
60651
-
6
23581109
23581720
+
596
0
99
612
59161
60031
-
6
23581729
23582598
+
844
0
99
872
58693
59130
-
6
23582631
23583067
+
425
0
99
437
57883
58674
-
6
23583086
23583878
+
769
0
99
793
57062
57875
-
6
23583887
23584698
+
789
0
99
813
55612
57010
-
6
23584733
23586132
+
1364
0
99
1400
82676
82767
+
6
23585788
23585878
+
83
2.80E-63
98
91
82902
82962
+
6
23585879
23585937
+
48
2.80E-63
95
60
54010
55539
-
6
23586206
23587733
+
1513
0
100
1529
53859
53993
-
6
23587751
23587884
+
134
0
100
134
153
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
53431
53871
-
6
23587887
23588326
+
410
0
98
442
50474
53330
-
6
23588428
23591285
+
2786
0
99
2858
50002
50466
-
6
23591293
23591756
+
444
0
99
464
90542
90658
-
6
23687273
23687389
+
98
8.10E-125
96
118
124463
124579
+
6
23687273
23687389
+
98
1.10E-158
96
118
112776
112792
+
6
23691214
23691229
+
16
3.60E-109
100
16
104661
104677
-
6
23699787
23699802
+
16
4.90E-20
100
16
101114
101184
-
6
23709799
23709868
+
58
4.90E-20
96
70
101090
101106
-
6
23709877
23709892
+
16
4.90E-20
100
16
133937
134043
+
6
23713682
23713786
+
74
1.10E-158
92
106
80923
81072
-
6
23713780
23713930
+
107
8.10E-125
93
151
134049
134198
+
6
23713780
23713930
+
107
1.10E-158
93
151
80797
80898
-
6
23713949
23714052
+
64
8.10E-125
90
104
134223
134324
+
6
23713949
23714052
+
64
1.10E-158
90
104
51620
51950
-
6
24553703
24554031
+
306
1.80E-169
98
330
17656
17693
-
6
24793608
24793645
+
34
2.00E-06
97
38
38946
38995
-
6
25263254
25263303
+
38
4.20E-08
94
50
43757
43795
-
6
25432551
25432589
+
35
1.50E-05
97
39
96324
96389
-
6
25682252
25682316
+
65
7.10E-26
100
65
48068
48207
-
6
25964004
25964147
+
97
1.20E-133
92
145
8160
8203
+
6
25967528
25967571
+
44
3.90E-56
100
44
8212
8308
+
6
25967579
25967676
+
94
3.90E-56
99
98
21689
21872
-
6
25967673
25967854
+
172
1.20E-133
98
184
88609
88680
+
6
26425091
26425161
+
63
1.10E-24
97
71
49870
49912
-
6
26925963
26926005
+
43
1.60E-11
100
43
84466
84550
-
6
26969846
26969929
+
80
8.10E-35
99
84
55397
55464
+
6
27093981
27094047
+
63
1.10E-24
99
67
55397
55464
+
6
27094089
27094155
+
63
1.10E-24
99
67
90685
90779
+
6
27107101
27107191
+
54
2.50E-19
89
94
104272
104288
+
6
28050413
28050428
+
16
0
100
16
100865
100880
+
6
28050413
28050427
+
15
0
100
15
106858
106873
-
6
28053354
28053368
+
15
6.80E-05
100
15
154
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
116391
116406
-
6
28069127
28069141
+
15
1.60E-05
100
15
121391
121406
-
6
28075598
28075612
+
15
1.60E-05
100
15
111105
111120
-
6
28079405
28079419
+
15
1.60E-05
100
15
103748
103763
+
6
28093559
28093573
+
15
0
100
15
100865
100881
+
6
28111236
28111251
+
16
0
100
16
104272
104287
+
6
28111236
28111250
+
15
0
100
15
116391
116406
-
6
28115718
28115732
+
15
1.60E-05
100
15
110588
110607
-
6
28149895
28149913
+
19
1.60E-05
100
19
104893
104908
+
6
28153401
28153415
+
15
0
100
15
122676
122691
-
6
28156078
28156092
+
15
0.0012
100
15
116391
116406
-
6
28166928
28166942
+
15
0.0012
100
15
116391
116406
-
6
28172125
28172139
+
15
0.0012
100
15
104817
106389
+
6
28179111
28180682
+
1554
0
100
1574
109988
110003
-
6
28179214
28179228
+
15
1.60E-05
100
15
105762
105794
-
6
28180056
28180087
+
32
1.60E-05
100
32
106397
107431
+
6
28180691
28181724
+
1026
0
100
1034
107439
107488
+
6
28181733
28181781
+
49
0
100
49
107496
109024
+
6
28181790
28183317
+
1520
0
100
1528
115247
115262
+
6
28191866
28191880
+
15
0
100
15
12530
12722
+
6
28216633
28216821
+
161
9.70E-79
96
193
24863
24981
-
6
28216824
28216942
+
111
3.30E-81
98
119
15911
15940
-
6
28217223
28217252
+
30
3.30E-81
100
30
15847
15902
-
6
28217261
28217316
+
48
3.30E-81
96
56
86024
86135
+
6
28260321
28260431
+
107
6.60E-51
99
111
54688
54829
-
6
28261114
28261254
+
129
5.20E-64
98
141
81719
81967
-
6
28330773
28331017
+
133
2.10E-66
88
249
70104
70225
-
6
29453426
29453545
+
71
1.90E-29
89
123
89774
89840
+
7
1123050
1123115
+
54
2.50E-19
95
66
94977
95138
+
7
1761774
1761934
+
73
1.20E-30
86
161
20349
20423
+
7
1901688
1901762
+
51
2.00E-12
92
75
20400
20562
+
7
1901765
1901927
+
139
8.40E-63
96
163
155
Chloroplast
Start
Rice Chromosome
End
Ori
Name
12865
12938
+
112735
112985
55066
Stats
Start
End
Ori
Score
E-val
%ID
Length
7
3116844
3116917
+
74
3.50E-28
100
74
+
7
4009150
4009398
+
234
2.50E-122
98
250
55167
+
7
4049235
4049333
+
54
2.50E-19
88
102
82017
82126
+
7
4475047
4475153
+
85
8.50E-38
95
109
77252
77417
-
7
4475152
4475313
+
110
1.10E-52
92
166
64418
64523
+
7
4579506
4579609
+
101
2.50E-47
99
105
43503
43534
-
7
4725677
4725708
+
32
1.60E-07
100
32
10074
10114
+
7
4797246
4797286
+
33
8.30E-06
95
41
85542
85686
-
7
4797286
4797429
+
108
1.70E-51
94
144
38939
39201
+
7
5509295
5509559
+
90
4.00E-36
83
266
46674
46740
-
7
6223089
6223156
+
48
8.50E-16
93
68
51102
51187
+
7
6697306
6697388
+
73
1.20E-30
96
85
94996
95099
+
7
6902933
6903035
+
60
6.70E-23
89
104
20900
20939
+
7
7274543
7274582
+
36
6.80E-09
98
40
65510
65608
+
7
7503081
7503178
+
90
0
98
98
65618
65733
+
7
7503187
7503301
+
79
1.70E-281
92
115
65675
65752
+
7
7503223
7503299
+
49
1.10E-263
91
77
65705
65962
+
7
7503232
7503485
+
202
0
95
258
65994
66462
+
7
7503487
7503956
+
364
0
94
472
60828
60947
-
7
8933513
8933631
+
115
1.10E-55
99
119
3825
3918
-
7
9086833
9086925
+
86
2.80E-34
98
94
18111
18284
-
7
9086922
9087096
+
152
4.10E-74
97
176
80251
80320
-
7
10125966
10126034
+
61
1.70E-23
97
69
127085
127100
-
7
12604761
12604775
+
15
0
100
15
109604
109619
-
7
12635705
12635719
+
15
0
100
15
131464
131479
-
7
12638933
12638947
+
15
0
100
15
131464
131480
-
7
12640666
12640681
+
16
0
100
16
114570
114589
-
7
12655457
12655476
+
16
0
95
20
109612
109912
-
7
12657295
12657594
+
300
0
100
300
107502
109606
-
7
12657589
12659692
+
2080
0
100
2104
107439
107488
-
7
12659707
12659755
+
49
0
100
49
106397
107431
-
7
12659767
12660800
+
1015
0
100
1035
156
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
105820
106389
-
7
12660810
12661378
+
557
0
99
569
101031
101046
-
7
12675650
12675664
+
15
0
100
15
65390
65450
-
7
12819016
12819074
+
48
9.50E-16
95
60
105516
105532
+
7
14209702
14209717
+
16
0
100
16
108285
108301
+
7
14212663
14212678
+
16
0
100
16
108285
108301
+
7
14217309
14217324
+
16
0
100
16
131463
131480
-
7
14220448
14220464
+
17
0.00011
100
17
93382
94985
-
7
14228664
14230265
+
1599
0
100
1603
120136
121739
+
7
14228664
14230265
+
1599
0
100
1603
93007
93374
-
7
14230274
14230640
+
367
0
100
367
121747
122114
+
7
14230274
14230640
+
367
0
100
367
89669
92998
-
7
14230653
14233983
+
3300
0
100
3332
122123
125418
+
7
14230653
14233949
+
3266
0
100
3298
87852
89659
-
7
14233994
14235799
+
1791
0
100
1807
125462
127269
+
7
14233994
14235799
+
1791
0
100
1807
43009
43044
-
7
14234299
14234334
+
32
1.60E-06
97
36
84416
87815
-
7
14235837
14239230
+
3354
0
100
3402
127306
130705
+
7
14235837
14239230
+
3354
0
100
3402
128784
128814
-
7
14237310
14237339
+
30
0.00011
100
30
80912
84408
-
7
14239239
14242734
+
3492
0
100
3496
130713
134209
+
7
14239239
14242734
+
3492
0
100
3496
55807
55866
+
7
14240685
14240744
+
48
3.00E-56
95
60
55866
55957
+
7
14240880
14240970
+
87
3.00E-56
99
91
80615
80904
-
7
14242743
14243031
+
289
0
100
289
134217
134506
+
7
14242743
14243031
+
289
0
100
289
113283
113299
-
7
14260414
14260429
+
16
0.0003
100
16
113283
113299
-
7
14316256
14316271
+
16
0.00011
100
16
26315
26640
+
7
14367107
14367433
+
272
2.70E-143
96
328
4487
4541
-
7
14758392
14758446
+
43
1.10E-47
95
55
4161
4274
-
7
14765766
14765878
+
77
1.10E-47
91
117
76377
76528
-
7
15560519
15560669
+
151
4.00E-77
100
151
6614
6709
+
7
15560668
15560763
+
96
5.30E-129
100
96
157
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
16213
16311
+
7
15560762
15560860
+
95
5.30E-129
99
99
28178
28236
+
7
15583878
15583936
+
59
5.30E-129
100
59
28272
28330
+
7
15583932
15583990
+
47
5.30E-129
95
59
9014
9127
+
7
15583991
15584104
+
106
5.80E-93
98
114
102672
102688
+
7
16595756
16595771
+
16
3.00E-287
100
16
108550
108566
+
7
16654088
16654103
+
16
3.00E-287
100
16
109815
109831
+
7
16664400
16664415
+
16
3.00E-287
100
16
85504
86020
-
7
16668129
16668644
+
516
1.30E-294
100
516
129101
129617
+
7
16668129
16668644
+
516
3.00E-287
100
516
131464
131480
+
7
16682819
16682834
+
16
3.00E-287
100
16
131464
131480
+
7
16692184
16692199
+
16
3.00E-287
100
16
48892
48977
-
7
16779084
16779168
+
54
2.50E-37
91
86
48838
48896
-
7
16794305
16794363
+
39
2.50E-37
92
59
30468
30732
+
7
17637127
17637391
+
193
1.80E-99
93
265
26315
26640
-
7
17777692
17778017
+
271
1.80E-143
96
327
40034
40089
+
7
17788193
17788248
+
40
2.60E-09
93
56
89046
89246
-
7
18890629
18890832
+
126
3.20E-62
90
206
3562
3709
-
7
19204360
19204507
+
128
6.40E-59
97
148
62265
62484
+
7
19204499
19204717
+
187
7.00E-234
96
219
96154
96355
+
7
19204715
19204915
+
181
7.00E-234
98
201
118766
118967
-
7
19204715
19204915
+
181
8.00E-131
98
201
132150
132166
-
7
19205823
19205838
+
16
1.60E-33
100
16
124655
124671
-
7
19232921
19232936
+
16
1.60E-33
100
16
105894
105910
-
7
19245350
19245365
+
16
4.00E-89
100
16
98892
98984
+
7
19280572
19280664
+
85
7.00E-234
98
93
116137
116229
-
7
19280572
19280664
+
85
8.00E-131
98
93
13601
13797
-
7
19594700
19594892
+
102
7.30E-44
88
202
35396
35517
+
7
20759746
20759867
+
106
4.20E-47
97
122
12164
12252
-
7
21757878
21757966
+
89
1.50E-38
100
89
20290
20514
-
7
21839513
21839737
+
217
1.80E-109
99
225
91353
91687
+
7
21874508
21874841
+
294
2.50E-162
97
334
123434
123768
-
7
21874508
21874841
+
294
6.20E-164
97
334
158
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
123412
123440
-
7
21874844
21874871
+
28
6.20E-164
100
28
63515
63761
-
7
22396433
22396679
+
239
0
99
247
63066
63507
-
7
22396688
22397130
+
411
0
98
443
61826
63058
-
7
22397139
22398368
+
1145
0
98
1233
91333
91416
-
7
22419465
22419547
+
83
1.30E-36
100
83
122491
122633
-
7
22936188
22936329
+
86
1.50E-120
90
142
122364
122480
-
7
22936331
22936446
+
53
1.50E-120
86
117
122329
122363
-
7
22936685
22936718
+
26
1.50E-120
94
34
92821
92986
+
7
22936737
22936907
+
91
2.30E-41
88
171
122135
122300
-
7
22936737
22936907
+
91
1.50E-120
88
171
122054
122110
-
7
22936940
22936994
+
36
1.50E-120
91
56
121967
121992
-
7
22937042
22937066
+
21
1.50E-120
96
25
10534
10661
-
7
22973765
22973890
+
57
3.80E-19
86
129
24551
24967
-
7
22995857
22996271
+
377
5.50E-254
98
417
24447
24545
-
7
22996271
22996369
+
95
5.50E-254
99
99
14599
14699
+
7
23007102
23007200
+
58
2.30E-17
89
102
13278
13569
-
7
23560810
23561103
+
136
5.70E-64
86
300
18494
18533
-
7
23641058
23641097
+
32
7.40E-06
95
40
22006
22104
-
7
24074751
24074851
+
45
3.20E-11
86
101
11317
11372
-
7
24162250
24162308
+
39
1.00E-08
92
59
7063
7120
-
7
24626169
24626226
+
34
1.90E-13
90
58
112759
112909
+
7
24746169
24746317
+
142
6.70E-272
99
150
112916
113303
+
7
24746312
24746698
+
359
6.70E-272
98
387
128775
128792
+
7
24772248
24772264
+
17
2.40E-271
100
17
35383
35469
+
7
24917149
24917235
+
83
1.50E-34
99
87
10367
10457
-
7
27924267
27924360
+
42
3.70E-10
86
94
76163
76222
+
7
27973545
27973603
+
59
0
100
59
76238
76511
+
7
27973619
27973891
+
261
0
99
273
76597
77696
+
7
27973976
27975075
+
1080
0
100
1100
77724
78413
+
7
27975104
27975791
+
666
0
99
690
78449
78968
+
7
27975819
27976338
+
508
0
99
520
78977
79140
+
7
27976347
27976509
+
163
0
100
163
159
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
79177
79509
+
7
27976546
27976877
+
324
0
99
332
79567
80050
+
7
27976936
27977419
+
476
0
100
484
80088
80170
+
7
27977457
27977538
+
82
0
100
82
80178
80600
+
7
27977547
27977968
+
418
0
100
422
80615
80809
+
7
27977983
27978176
+
186
0
99
194
85207
85305
-
7
28021411
28021509
+
79
3.20E-34
95
99
47580
47635
+
7
28938574
28938629
+
44
2.30E-12
95
56
33864
34028
-
7
29006233
29006398
+
91
9.50E-37
89
167
1
2932
-
8
22189961
22192892
+
2932
0
100
2932
74282
74422
+
8
71013
71152
+
128
1.30E-132
98
140
74414
74547
+
8
71153
71284
+
113
1.30E-132
96
133
1748
1783
-
8
865249
865283
+
28
0.00052
94
36
94713
94876
+
8
899815
899974
+
127
8.00E-63
94
163
29376
29476
-
8
2686094
2686196
+
67
8.50E-27
91
103
28867
28921
+
8
2909472
2909526
+
43
6.00E-63
95
55
28939
29120
+
8
2909531
2909709
+
112
6.00E-63
90
184
32517
32567
-
8
3319390
3319440
+
43
3.00E-10
96
51
96706
96852
-
8
3579732
3579876
+
103
2.90E-130
93
147
118269
118415
+
8
3579732
3579876
+
103
1.10E-129
93
147
118668
118715
+
8
3580239
3580285
+
39
1.10E-129
96
47
96287
96341
-
8
3580284
3580337
+
50
2.90E-130
98
54
118780
118834
+
8
3580284
3580337
+
50
1.10E-129
98
54
96082
96257
-
8
3580384
3580557
+
104
2.90E-130
90
176
118864
119039
+
8
3580384
3580557
+
104
1.10E-129
90
176
45239
45298
+
8
3587502
3587561
+
31
4.30E-06
87
63
70732
70938
-
8
3777982
3778187
+
182
1.40E-95
97
206
70347
70732
-
8
3778188
3778570
+
357
7.20E-200
98
385
51633
51703
+
8
3971206
3971275
+
58
2.40E-95
96
70
91945
92235
+
8
3971294
3971587
+
143
2.40E-95
87
295
72596
72656
+
8
5811858
5811917
+
56
1.60E-20
98
60
22365
22805
-
8
5838689
5839136
+
352
1.70E-190
95
448
160
Chloroplast
Start
Rice Chromosome
End
Ori
Name
61453
61636
+
84483
84635
21412
Stats
Start
End
Ori
Score
E-val
%ID
Length
8
6188421
6188601
+
155
1.70E-79
96
183
-
8
7753956
7754104
+
128
2.00E-63
96
152
21492
+
8
7813271
7813351
+
65
2.80E-24
95
81
93385
93486
+
8
9054748
9054848
+
101
2.50E-47
100
101
101511
101527
-
8
9223565
9223580
+
16
0
100
16
114093
114756
+
8
9236593
9237256
+
656
0
100
664
100365
101028
-
8
9236593
9237256
+
656
0
100
664
114451
114503
-
8
9236952
9237003
+
44
7.10E-52
96
52
100618
100670
+
8
9236952
9237003
+
44
0
96
52
115032
116738
+
8
9237253
9238961
+
1689
0
100
1709
100002
100089
-
8
9237253
9237339
+
83
0
99
87
98383
100002
-
8
9237340
9238961
+
1606
0
100
1622
94132
98367
-
8
9238978
9243215
+
4180
0
100
4240
116754
120989
+
8
9238978
9243215
+
4180
0
100
4240
121590
121607
+
8
9242721
9242737
+
17
0
100
17
93382
93845
-
8
9243211
9243673
+
463
0
100
463
121276
121739
+
8
9243211
9243673
+
463
0
100
463
120493
120510
+
8
9243525
9243541
+
17
0
100
17
93007
93374
-
8
9243682
9244048
+
351
0
99
367
121747
122114
+
8
9243682
9244048
+
351
0
99
367
89669
92998
-
8
9244066
9247396
+
3296
0
100
3332
122123
125418
+
8
9244066
9247362
+
3262
0
100
3298
87852
89659
-
8
9247408
9249213
+
1775
0
100
1807
125462
127269
+
8
9247408
9249213
+
1775
0
100
1807
43009
43044
-
8
9247713
9247748
+
32
5.00E-07
97
36
84416
87815
-
8
9249251
9252644
+
3350
0
100
3402
127306
130705
+
8
9249251
9252644
+
3350
0
100
3402
80912
84408
-
8
9252653
9256148
+
3484
0
100
3496
130713
134209
+
8
9252653
9256148
+
3484
0
100
3496
55866
55957
+
8
9254294
9254384
+
87
5.10E-48
99
91
80615
80904
-
8
9256157
9256445
+
289
0
100
289
134217
134506
+
8
9256157
9256445
+
289
0
100
289
161
Chloroplast
Start
Rice Chromosome
End
Ori
Name
80178
80600
-
80089
80170
79177
Stats
Start
End
Ori
Score
E-val
%ID
Length
8
9256461
9256882
+
422
0
100
422
-
8
9256891
9256971
+
81
0
100
81
80047
-
8
9257013
9257882
+
862
0
100
870
78977
79140
-
8
9257919
9258081
+
163
0
100
163
78449
78968
-
8
9258090
9258609
+
516
0
100
520
77725
78413
-
8
9258638
9259324
+
673
0
99
689
76632
77697
-
8
9259354
9260419
+
1058
0
100
1066
129478
129495
+
8
9260108
9260124
+
17
0
100
17
76238
76528
-
8
9260522
9260811
+
286
0
100
290
75987
76222
-
8
9260827
9261060
+
231
0
100
235
75888
75970
-
8
9261078
9261159
+
82
0
100
82
74585
75875
-
8
9261173
9262461
+
1282
0
100
1290
74282
74549
-
8
9262498
9262764
+
267
0
100
267
71786
74265
-
8
9262782
9265263
+
2430
0
99
2486
71469
71750
-
8
9265300
9265580
+
281
0
100
281
69541
71371
-
8
9265679
9267508
+
1781
0
99
1833
102899
102915
-
8
9267119
9267134
+
16
1.80E-12
100
16
69009
69533
-
8
9267517
9268040
+
516
0
100
524
65618
69019
-
8
9268038
9271438
+
3328
0
99
3404
112084
112100
+
8
9268649
9268664
+
16
4.40E-28
100
16
63780
65609
-
8
9271446
9273274
+
1799
0
100
1831
63515
63772
-
8
9273283
9273539
+
257
0
100
257
63066
63507
-
8
9273549
9273989
+
441
0
100
441
115928
115944
+
8
9273783
9273798
+
16
0
100
16
62530
63058
-
8
9273998
9274525
+
524
0
100
528
126366
126412
+
8
9274027
9274072
+
46
0
100
46
61083
62522
-
8
9274534
9275972
+
1424
0
100
1440
60680
61075
-
8
9275980
9276379
+
372
0
98
400
60039
60651
-
8
9276409
9277020
+
612
0
100
612
59161
60031
-
8
9277029
9277896
+
858
0
100
870
58807
59130
-
8
9277928
9278250
+
319
0
100
323
103242
103258
+
8
9310484
9310499
+
16
7.10E-11
100
16
162
Chloroplast
Start
Rice Chromosome
End
Ori
Name
112551
112567
-
20060
20359
32674
Stats
Start
End
Ori
Score
E-val
%ID
Length
8
9325771
9325786
+
16
1.80E-11
100
16
+
8
9632198
9632494
+
204
1.20E-104
92
300
32734
+
8
10366382
10366441
+
53
4.70E-15
97
61
77337
77518
-
8
10791044
10791225
+
154
6.50E-79
96
182
68751
69303
-
8
11015945
11016496
+
457
1.90E-259
96
553
4570
4609
+
8
11443579
11443618
+
36
5.50E-07
98
40
109601
109618
-
8
11553451
11553467
+
17
1.40E-99
100
17
107802
108017
-
8
11580915
11581130
+
196
1.40E-99
98
216
45167
45202
-
8
11959618
11959653
+
32
2.40E-09
97
36
21639
21839
-
8
12037958
12038158
+
193
3.00E-98
99
201
132956
132976
-
8
12191005
12191025
+
17
1.10E-221
95
21
132956
132976
-
8
12196827
12196847
+
17
1.10E-221
95
21
111036
111492
-
8
12265553
12266003
+
402
1.10E-221
97
458
100862
100878
-
8
12293051
12293066
+
16
1.10E-221
100
16
106225
106241
-
8
12297165
12297180
+
16
1.10E-221
100
16
45800
45860
-
8
12371846
12371906
+
41
8.90E-10
92
61
21369
21539
+
8
14031037
14031207
+
99
2.50E-44
89
171
46676
46718
+
8
14603467
14603509
+
35
5.20E-08
95
43
50177
50385
-
8
14668420
14668627
+
164
7.20E-85
95
208
23609
23822
-
8
14983304
14983520
+
187
8.70E-91
96
219
17600
17654
-
8
15638620
15638674
+
31
1.50E-13
89
55
17600
17654
-
8
15640611
15640665
+
31
1.50E-13
89
55
51800
52056
-
8
16395631
16395888
+
218
2.20E-281
96
258
51709
51791
-
8
16395891
16395972
+
66
2.20E-281
95
82
51395
51707
-
8
16395985
16396295
+
249
2.20E-281
95
313
25848
25896
-
8
16422134
16422181
+
29
0.00018
90
49
77252
77417
+
8
17080617
17080780
+
121
3.00E-59
93
165
81980
82126
-
8
17080779
17080919
+
90
8.90E-41
90
146
53438
53520
+
8
17477777
17477855
+
55
6.40E-20
92
83
6642
6719
-
8
17700971
17701048
+
70
2.50E-24
97
78
38830
38884
-
8
19062401
19062455
+
31
9.90E-49
89
55
38696
38783
-
8
19062466
19062553
+
61
9.90E-49
92
89
163
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
38619
38672
-
8
19062553
19062606
+
42
9.90E-49
94
54
88566
88623
+
8
19343708
19343764
+
49
2.40E-16
96
57
9331
9457
+
8
19759824
19759950
+
44
4.40E-18
84
128
9465
9505
+
8
19759948
19759988
+
29
4.40E-18
93
41
81808
82008
+
8
19935466
19935665
+
128
2.00E-63
91
200
74969
75036
-
8
20745459
20745525
+
67
4.50E-27
100
67
7513
7582
+
8
20882941
20883010
+
70
2.00E-83
100
70
7592
7700
+
8
20883019
20883127
+
109
2.00E-83
100
109
28667
28790
-
8
20899258
20899377
+
73
1.50E-28
90
125
6517
6615
-
8
21137054
21137157
+
80
3.40E-33
94
104
80700
80795
-
8
21374112
21374212
+
61
1.70E-23
90
101
40729
40830
+
8
22039277
22039378
+
78
4.50E-29
94
102
2941
3179
-
8
22189714
22189952
+
239
0
100
239
1
37
+
8
22192863
22192899
+
29
0.00022
95
37
80615
80904
+
8
22192910
22193198
+
289
0
100
289
134217
134506
-
8
22192910
22193198
+
289
0
100
289
80912
82640
+
8
22193207
22194934
+
1720
0
100
1728
132481
134209
-
8
22193207
22194934
+
1720
0
100
1728
114317
114332
-
8
22198681
22198695
+
15
0
100
15
33788
33959
+
8
22427414
22427586
+
77
6.40E-31
86
177
2941
2997
+
8
23466306
23466362
+
38
1.30E-13
91
58
23476
24034
-
8
23509473
23510031
+
559
7.6e-316
100
559
52762
52921
-
8
25291975
25292132
+
123
1.90E-60
94
159
59647
59706
+
8
25292291
25292349
+
59
2.60E-22
100
59
37236
37438
+
8
25292351
25292553
+
179
7.00E-87
97
203
7692
7731
-
8
26337286
26337325
+
36
2.90E-07
98
40
80966
81043
-
9
445561
445636
+
53
4.60E-29
92
77
84416
84558
-
9
670165
670306
+
107
6.60E-51
94
143
126629
126645
-
9
941596
941611
+
16
1.80E-27
100
16
105320
105434
-
9
965459
965572
+
75
1.50E-28
91
115
88210
88535
-
9
965583
965907
+
246
9.90E-134
94
326
164
Chloroplast
Start
Rice Chromosome
End
Ori
Name
126586
126911
+
87851
87968
127153
Stats
Start
End
Ori
Score
E-val
%ID
Length
9
965583
965907
+
246
3.00E-129
94
326
+
9
965946
966062
+
97
6.00E-45
96
117
127270
-
9
965946
966062
+
97
9.00E-42
96
117
118625
118650
-
9
982138
982163
+
18
3.40E-41
92
26
124998
125017
-
9
989733
989751
+
19
9.00E-42
100
19
125323
125339
-
9
1018442
1018457
+
16
4.70E-40
100
16
68704
69533
+
9
2493742
2494570
+
813
0
100
829
69541
71207
+
9
2494579
2496244
+
1609
0
99
1669
38801
38890
+
9
3742335
3742424
+
66
7.60E-23
93
90
5673
5857
+
9
3775667
3775850
+
137
1.00E-76
94
185
5876
5916
+
9
3775852
3775892
+
37
1.00E-76
98
41
74471
74547
+
9
4036291
4036366
+
64
0
96
76
74585
74807
+
9
4036405
4036624
+
214
0
99
222
74765
75851
+
9
4036619
4037704
+
1000
0
98
1088
33259
33304
+
9
4364162
4364208
+
43
0
98
47
33399
33577
+
9
4364288
4364466
+
155
0
97
179
33618
34184
+
9
4364508
4365075
+
480
0
96
568
34194
34665
+
9
4365083
4365554
+
404
0
96
472
34673
35155
+
9
4365552
4366032
+
350
0
93
486
56657
56710
+
9
4397778
4397830
+
53
9.90E-19
100
53
35764
35937
-
9
4638695
4638867
+
170
0
99
174
34972
35761
-
9
4638861
4639650
+
691
0
97
791
34853
34936
-
9
4639674
4639757
+
84
0
100
84
27607
27658
-
9
4639752
4639803
+
44
0
96
52
35056
35121
+
9
4675961
4676026
+
34
1.30E-13
88
66
35180
35237
+
9
4676085
4676142
+
30
1.30E-13
88
58
26005
26044
-
9
4677744
4677783
+
32
0
95
40
25856
25931
-
9
4677845
4677921
+
34
0
86
78
25677
25843
-
9
4677923
4678091
+
87
0
88
171
19380
19446
+
9
5060018
5060084
+
59
2.10E-100
97
67
19463
19597
+
9
5060088
5060222
+
107
2.10E-100
95
135
19599
19680
+
9
5060442
5060523
+
70
2.10E-100
96
82
165
Chloroplast
Start
Rice Chromosome
End
Ori
Name
22381
22487
-
6152
6307
20346
Stats
Start
End
Ori
Score
E-val
%ID
Length
9
5501008
5501115
+
68
3.00E-24
91
108
+
9
5599623
5599779
+
109
2.00E-47
92
157
20464
-
9
6351772
6351890
+
67
2.80E-25
89
119
84594
84966
+
9
6599376
6599747
+
306
1.70E-169
95
374
130155
130527
-
9
6599376
6599747
+
306
3.90E-166
95
374
101567
101584
-
9
6623953
6623969
+
17
3.90E-166
100
17
107830
107846
-
9
6678742
6678757
+
16
1.20E-162
100
16
115358
115377
-
9
6695133
6695152
+
16
6.10E-164
95
20
19380
19527
+
9
6793370
6793517
+
112
1.90E-103
94
148
19528
19680
+
9
6793524
6793677
+
110
1.90E-103
93
154
18812
18842
-
9
6846544
6846574
+
31
9.20E-05
100
31
9879
10007
+
9
6877447
6877575
+
60
1.80E-19
86
132
19380
19680
+
9
7337715
7338018
+
224
2.60E-116
93
304
28273
28474
+
9
7732293
7732498
+
151
1.50E-71
93
207
60682
60765
+
9
7829738
7829820
+
83
1.30E-36
100
83
51772
51821
-
9
8067664
8067712
+
49
2.40E-16
100
49
84504
84842
+
9
9917818
9918155
+
319
3.10E-177
99
339
130279
130617
-
9
9917818
9918155
+
319
9.40E-172
99
339
130229
130278
-
9
9918107
9918155
+
45
3.80E-11
98
49
100287
100303
-
9
9982321
9982336
+
16
9.40E-172
100
16
87342
87550
+
9
10798934
10799140
+
180
2.10E-94
97
208
57470
57697
+
9
10902656
10902881
+
170
1.90E-88
93
230
19380
19661
-
9
11531119
11531401
+
200
3.20E-101
93
284
60114
60536
+
9
11610554
11610975
+
422
1.30E-238
100
422
115617
115632
+
9
11944692
11944706
+
15
0
100
15
80912
81952
-
9
11944700
11945738
+
974
0
98
1042
133169
134209
+
9
11944700
11945738
+
974
0
98
1042
80615
80903
-
9
11945748
11946035
+
284
0
100
288
134218
134506
+
9
11945748
11946035
+
284
0
100
288
80178
80600
-
9
11946050
11946468
+
394
0
98
422
80089
80170
-
9
11946478
11946558
+
81
0
100
81
79177
80047
-
9
11946599
11947468
+
824
0
99
872
166
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
78981
79140
-
9
11947503
11947661
+
151
0
99
159
78542
78968
-
9
11947675
11948101
+
399
0
98
427
78449
78532
-
9
11948099
11948181
+
83
0
100
83
77725
78413
-
9
11948209
11948895
+
661
0
99
689
76632
77697
-
9
11948925
11949990
+
1022
0
99
1066
19052
19144
+
9
12024164
12024251
+
49
1.90E-13
88
93
19380
19442
+
9
12296588
12296650
+
47
7.30E-14
94
63
19380
19672
+
9
12296659
12296951
+
233
4.50E-123
95
293
19380
19442
+
9
12651335
12651397
+
47
3.80E-11
94
63
19380
19672
+
9
12651406
12651698
+
233
5.50E-120
95
293
98406
98566
-
9
12735437
12735596
+
109
4.30E-52
92
161
19380
19442
+
9
12894850
12894912
+
47
1.30E-12
94
63
19380
19672
+
9
12894921
12895213
+
233
4.80E-120
95
293
108527
108544
+
9
14424094
14424110
+
17
0
100
17
111624
111639
+
9
14429221
14429235
+
15
0
100
15
126287
126303
+
9
14446053
14446068
+
16
0
100
16
120973
120988
+
9
14448490
14448504
+
15
0
100
15
100819
100834
+
9
14453527
14453541
+
15
0
100
15
93197
93338
-
9
14457730
14457871
+
94
0
92
142
121783
121924
+
9
14457730
14457871
+
94
0
92
142
106101
106116
+
9
14463602
14463616
+
15
0
100
15
110617
110632
+
9
14490710
14490724
+
15
0
100
15
133039
133054
+
9
14497025
14497039
+
15
9.60E-199
100
15
130535
130550
+
9
14497702
14497716
+
15
0
100
15
133039
133054
+
9
14500283
14500297
+
15
7.60E-198
100
15
130535
130550
+
9
14500930
14500944
+
15
0
100
15
80912
83055
-
9
14504285
14506427
+
2143
0
100
2143
132066
134209
+
9
14504285
14506427
+
2143
0
100
2143
55807
55866
+
9
14504378
14504437
+
48
2.90E-56
95
60
55866
55957
+
9
14504573
14504663
+
87
2.90E-56
99
91
80615
80904
-
9
14506436
14506724
+
289
0
100
289
134217
134506
+
9
14506436
14506724
+
289
0
100
289
167
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
80178
80600
-
9
14506740
14507161
+
418
0
100
422
80089
80170
-
9
14507170
14507250
+
81
0
100
81
79177
80047
-
9
14507291
14508160
+
862
0
100
870
78977
79140
-
9
14508198
14508360
+
163
0
100
163
78449
78968
-
9
14508370
14508889
+
516
0
100
520
77725
78413
-
9
14508920
14509606
+
673
0
99
689
77613
77697
-
9
14509635
14509718
+
84
0
100
84
90770
90851
-
9
15150752
15150832
+
61
1.70E-23
94
81
39590
39677
-
9
15832652
15832739
+
77
1.60E-29
97
89
7858
8027
+
9
16300294
16300463
+
158
8.20E-77
98
170
53431
53514
-
9
16351991
16352073
+
71
2.40E-76
96
83
53203
53317
-
9
16352174
16352287
+
98
2.40E-76
96
114
46564
46831
+
9
16672790
16673049
+
83
2.10E-34
83
271
83855
83915
+
9
16967358
16967417
+
52
3.90E-18
97
60
40243
40628
-
9
17163326
17163711
+
374
2.00E-203
99
386
68975
69084
+
9
17855155
17855263
+
62
4.30E-24
89
110
46632
46834
+
9
18336123
18336321
+
135
1.50E-62
92
203
18190
18240
-
9
18364877
18364929
+
37
6.30E-11
92
53
43192
43266
-
9
18454399
18454473
+
67
3.30E-23
97
75
26907
26985
+
9
18566194
18566277
-
28
4.70E-06
83
84
22896
22952
-
9
18577552
18577608
-
53
4.40E-16
98
57
35427
35468
+
9
18577608
18577649
-
34
3.10E-09
95
42
120435
120451
+
9
18691858
18691873
-
16
3.30E-176
100
16
107931
108328
+
9
18718839
18719236
-
323
3.30E-176
95
399
104847
104863
+
9
18734858
18734873
-
16
3.30E-176
100
16
889
966
-
9
19974831
19974908
+
43
2.20E-14
89
79
76851
76952
-
9
20197584
20197684
+
101
2.50E-47
100
101
74784
75002
-
9
20293506
20293721
+
162
1.10E-83
94
218
7180
7233
-
9
20994539
20994591
+
34
4.70E-15
91
54
7115
7176
-
9
20994608
20994669
+
34
4.70E-15
89
62
77252
77417
+
9
21163545
21163708
+
125
1.20E-61
94
165
8099
8137
-
9
21178607
21178645
+
31
1.90E-14
95
39
168
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
7921
8034
-
9
21178657
21178774
+
35
1.90E-14
82
119
61559
62160
+
9
21929739
21930339
+
601
0
100
601
59271
59404
+
10
852783
852911
+
73
1.20E-30
89
133
39895
39934
-
10
1214425
1214464
+
36
1.70E-07
98
40
40120
40228
+
10
1214463
1214570
+
77
2.40E-29
93
109
109596
109612
-
10
4309372
4309387
-
16
3.40E-182
100
16
1743
1779
-
10
4316083
4316119
+
37
1.80E-11
100
37
110589
110607
-
10
4342269
4342286
-
18
3.40E-182
100
18
112421
112438
-
10
4369534
4369550
-
17
3.40E-182
100
17
117520
117562
-
10
4381555
4381596
-
42
3.40E-182
100
42
123337
123366
-
10
4382082
4382110
-
25
3.40E-182
97
29
88997
89402
+
10
4382214
4382617
-
300
3.50E-179
93
408
125719
126124
-
10
4382214
4382617
-
300
3.40E-182
93
408
127511
127527
-
10
4406001
4406016
-
16
3.40E-182
100
16
15386
15447
+
10
4483251
4483313
+
39
2.60E-09
90
63
4215
4315
-
10
4980283
4980384
+
56
5.30E-44
88
104
4113
4195
-
10
4980384
4980472
+
61
5.30E-44
92
89
19264
19304
-
10
5189589
5189629
+
29
2.60E-05
93
41
83162
83242
-
10
5483046
5483125
+
64
2.80E-25
95
80
92023
92131
+
10
5483125
5483232
+
80
8.10E-35
94
108
2277
2316
+
10
5841411
5841450
-
36
1.50E-07
98
40
1832
2423
-
10
5841525
5842117
-
534
0
97
594
2430
2714
-
10
5842118
5842402
-
265
0
98
285
2568
2601
-
10
5842449
5842482
-
34
5.2e-311
100
34
87021
87192
+
10
7191234
7191404
+
155
1.60E-79
98
171
10102
10190
-
10
7658329
7658417
+
85
1.20E-35
99
89
46570
46710
+
10
7658928
7659067
+
125
4.90E-58
97
141
45530
45572
-
10
7660160
7660202
+
43
1.90E-11
100
43
117341
117357
+
10
7764537
7764552
+
16
1.50E-51
100
16
115509
115525
-
10
7783464
7783479
+
16
1.60E-142
100
16
110013
110288
-
10
7798563
7798837
+
267
7.70E-144
99
275
169
Chloroplast
Start
Rice Chromosome
End
Ori
Name
110232
110249
+
82366
82580
132541
Stats
Start
End
Ori
Score
E-val
%ID
Length
10
7810786
7810802
+
17
1.20E-53
100
17
+
10
7814271
7814484
+
214
1.20E-114
100
214
132755
-
10
7814271
7814484
+
214
9.50E-110
100
214
82265
82378
-
10
7814893
7815005
+
113
1.80E-54
100
113
132743
132856
+
10
7814893
7815005
+
113
1.20E-53
100
113
130299
130315
-
10
7825790
7825805
+
16
9.50E-110
100
16
39086
39141
-
10
8523287
8523340
-
36
4.60E-08
91
56
81712
81804
+
10
8545428
8545519
-
80
8.10E-35
97
92
73069
73241
+
10
9619916
9620091
+
121
3.00E-59
92
177
114243
114259
+
10
9988884
9988899
+
16
1.70E-132
100
16
90134
90372
-
10
10078931
10079169
+
187
2.60E-136
95
239
124749
124987
+
10
10078931
10079169
+
187
3.90E-133
95
239
90012
90122
-
10
10079171
10079281
+
83
2.60E-136
94
111
124999
125109
+
10
10079171
10079281
+
83
3.90E-133
94
111
63546
63744
+
10
10175106
10175301
-
143
2.30E-72
93
199
43009
43044
-
10
10289191
10289226
+
32
4.30E-12
97
36
1
37
-
10
10297935
10297971
+
29
4.30E-12
95
37
1
2932
+
10
10297942
10300873
+
2892
0
100
2932
2941
3535
+
10
10300882
10301476
+
591
0
100
595
3553
4316
+
10
10301494
10302257
+
748
0
99
764
4353
6075
+
10
10302294
10304017
+
1700
0
100
1724
6107
6337
+
10
10304049
10304278
+
223
0
99
231
6346
7480
+
10
10304287
10305421
+
1115
0
100
1135
7513
7582
+
10
10305454
10305523
+
70
0
100
70
7592
8037
+
10
10305532
10305977
+
442
0
100
446
44496
44524
-
10
10305769
10305797
+
29
6.00E-05
100
29
8093
8203
+
10
10306033
10306143
+
111
0
100
111
8212
8513
+
10
10306152
10306453
+
302
0
100
302
8623
11432
+
10
10306494
10309303
+
2771
0
100
2811
11487
13987
+
10
10309358
10311856
+
2439
0
99
2503
36195
36238
+
10
10310655
10310698
+
36
0
95
44
13997
14863
+
10
10311866
10312730
+
839
0
99
867
170
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
14864
15200
+
10
10312731
10313066
+
325
0
99
337
15261
15491
+
10
10313127
10313356
+
223
0
99
231
15500
15902
+
10
10313365
10313767
+
403
0
100
403
15980
16670
+
10
10313845
10314539
+
675
0
99
695
16679
17091
+
10
10314548
10314962
+
407
0
100
415
16880
16927
-
10
10314749
10314798
+
34
1.60E-15
92
50
17118
17331
+
10
10314989
10315202
+
210
0
100
214
17373
17811
+
10
10315236
10315676
+
425
0
99
441
17779
18625
+
10
10315676
10316522
+
835
0
100
847
18642
19675
+
10
10316538
10317571
+
1026
0
100
1034
19706
20614
+
10
10317568
10318476
+
893
0
100
909
20624
27108
+
10
10318486
10324971
+
6426
0
100
6486
27117
27248
+
10
10324980
10325111
+
132
0
100
132
27257
27341
+
10
10325120
10325204
+
85
0
100
85
27387
29137
+
10
10325250
10327000
+
1724
0
100
1752
29149
29503
+
10
10327010
10327364
+
351
0
100
355
29541
31267
+
10
10327402
10329128
+
1711
0
100
1727
31276
31505
+
10
10329137
10329366
+
230
0
100
230
31514
31881
+
10
10329375
10329742
+
364
0
100
368
31891
32013
+
10
10329742
10329864
+
123
0
100
123
32022
32168
+
10
10329873
10330019
+
147
0
100
147
32122
32640
+
10
10330018
10330536
+
519
0
100
519
32674
33364
+
10
10330570
10331259
+
683
0
100
691
33399
33577
+
10
10331294
10331472
+
171
0
99
179
33618
34184
+
10
10331513
10332080
+
552
0
99
568
34194
35935
+
10
10332090
10333831
+
1710
0
100
1742
35972
36531
+
10
10333868
10334427
+
556
0
100
560
36541
36607
+
10
10334437
10334503
+
67
0
100
67
36616
41364
+
10
10334512
10339260
+
4679
0
100
4751
41374
41491
+
10
10339270
10339387
+
118
0
100
118
41535
42468
+
10
10339431
10340364
+
920
0
100
936
42477
43683
+
10
10340373
10341571
+
1157
0
99
1209
171
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
43700
43898
+
10
10341588
10341786
+
199
0
100
199
43909
44411
+
10
10341797
10342297
+
491
0
99
503
44420
44883
+
10
10342306
10342769
+
457
0
100
465
7829
7857
-
10
10342382
10342410
+
29
1.60E-15
100
29
44892
45244
+
10
10342778
10343130
+
349
0
100
353
45279
45574
+
10
10343128
10343423
+
296
0
100
296
45613
45946
+
10
10343462
10343795
+
330
0
100
334
45968
46164
+
10
10343817
10344008
+
177
0
97
197
46193
46276
+
10
10344035
10344118
+
84
0
100
84
46286
46495
+
10
10344128
10344337
+
210
0
100
210
46504
49273
+
10
10344346
10347118
+
2737
0
100
2773
49286
49502
+
10
10347129
10347345
+
217
0
100
217
49511
50000
+
10
10347353
10347843
+
483
0
100
491
43009
43044
+
10
10387156
10387191
+
32
0
97
36
114340
114356
+
10
10409911
10409926
+
16
0
100
16
97405
97618
-
10
10458684
10458901
+
194
0
97
218
117503
117716
+
10
10458684
10458901
+
194
0
97
218
93837
97527
-
10
10458897
10462588
+
3634
0
100
3694
117594
121284
+
10
10458897
10462588
+
3634
0
100
3694
121590
121607
+
10
10461799
10461815
+
17
2.60E-99
100
17
93382
93837
-
10
10462589
10463043
+
447
0
100
455
121284
121739
+
10
10462589
10463043
+
447
0
100
455
120493
120510
+
10
10462895
10462911
+
17
0
100
17
93007
93374
-
10
10463052
10463418
+
347
0
99
367
121747
122114
+
10
10463052
10463418
+
347
0
99
367
92195
92998
-
10
10463434
10464236
+
795
0
100
803
122123
122926
+
10
10463434
10464236
+
795
0
100
803
89669
92184
-
10
10464234
10466750
+
2482
0
100
2518
122937
125418
+
10
10464234
10466716
+
2448
0
100
2484
87852
89658
-
10
10466761
10468565
+
1774
0
100
1806
125463
127269
+
10
10466761
10468565
+
1774
0
100
1806
84416
87815
-
10
10468603
10471994
+
3314
0
99
3402
172
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
127306
130705
+
10
10468603
10471994
+
3314
0
99
3402
128784
128814
-
10
10470076
10470105
+
30
2.00E-05
100
30
80912
84408
-
10
10472003
10475498
+
3460
0
100
3496
130713
134209
+
10
10472003
10475498
+
3460
0
100
3496
55866
55957
+
10
10473644
10473734
+
87
0
99
91
80615
80904
-
10
10475507
10475795
+
289
0
100
289
134217
134506
+
10
10475507
10475795
+
289
0
100
289
104212
104228
+
10
10481904
10481919
+
16
2.40E-52
100
16
126422
126438
-
10
10490066
10490081
+
16
2.00E-05
100
16
111208
111226
+
10
10518768
10518785
+
18
2.40E-52
100
18
120912
120931
-
10
10523150
10523168
+
19
2.00E-05
100
19
50002
50466
+
10
10525718
10526181
+
456
0
100
464
50474
53330
+
10
10526189
10529046
+
2814
0
100
2858
53424
53871
+
10
10529140
10529586
+
417
0
98
449
53859
53993
+
10
10529589
10529722
+
134
0
100
134
54010
55538
+
10
10529740
10531267
+
1512
0
100
1528
55599
55666
+
10
10531329
10531395
+
63
0
99
67
55672
57010
+
10
10531402
10532741
+
1312
0
99
1340
82902
82962
-
10
10531537
10531595
+
48
0
95
60
132159
132219
+
10
10531537
10531595
+
48
0
95
60
82676
82767
-
10
10531596
10531686
+
83
0
98
91
132354
132445
+
10
10531596
10531686
+
83
0
98
91
57099
57875
+
10
10532818
10533597
+
737
0
99
781
57883
58265
+
10
10533606
10533987
+
366
0
99
382
58314
58674
+
10
10534037
10534398
+
354
0
99
362
58689
59130
+
10
10534415
10534855
+
433
0
100
441
59161
59410
+
10
10534887
10535135
+
249
0
100
249
59468
60031
+
10
10535193
10535754
+
559
0
100
563
60039
60639
+
10
10535763
10536362
+
592
0
100
600
60680
61075
+
10
10536404
10536803
+
376
0
99
400
61162
61794
+
10
10536891
10537521
+
624
0
100
632
61794
63058
+
10
10537522
10538785
+
1256
0
100
1264
173
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
126366
126412
-
10
10538711
10538756
63066
63507
+
10
10538794
115928
115944
-
10
63515
63772
+
63780
65609
65618
Stats
Ori
Score
E-val
%ID
Length
+
46
0
100
46
10539234
+
437
0
100
441
10538985
10539000
+
16
0
100
16
10
10539243
10539499
+
257
0
100
257
+
10
10539508
10541336
+
1815
0
100
1831
69533
+
10
10541346
10545260
+
3818
0
99
3918
112084
112100
-
10
10544120
10544135
+
16
0
100
16
69541
71371
+
10
10545269
10547098
+
1777
0
99
1833
102899
102915
+
10
10545643
10545658
+
16
1.10E-59
100
16
71468
71749
+
10
10547196
10547475
+
277
0
100
281
71784
74265
+
10
10547511
10549995
+
2432
0
99
2488
74282
74547
+
10
10550013
10550277
+
265
0
100
265
74585
75875
+
10
10550316
10551605
+
1282
0
100
1290
75987
76222
+
10
10551716
10551950
+
231
0
100
235
76238
76511
+
10
10551966
10552238
+
269
0
100
273
76597
76663
+
10
10552323
10552388
+
66
0
100
66
76663
77696
+
10
10552383
10553416
+
1026
0
100
1034
129478
129495
-
10
10552647
10552663
+
17
0
100
17
77724
78413
+
10
10553446
10554133
+
678
0
100
690
78449
78968
+
10
10554163
10554682
+
512
0
100
520
78977
79140
+
10
10554691
10554853
+
155
0
99
163
79177
79509
+
10
10554890
10555221
+
324
0
99
332
79567
80050
+
10
10555280
10555762
+
483
0
100
483
80088
80170
+
10
10555801
10555882
+
82
0
100
82
80178
80600
+
10
10555891
10556313
+
419
0
100
423
80615
80904
+
10
10556330
10556618
+
289
0
100
289
134217
134506
-
10
10556330
10556618
+
289
0
100
289
80912
84408
+
10
10556627
10560121
+
3432
0
100
3496
130713
134209
-
10
10556627
10560121
+
3432
0
100
3496
55866
55957
-
10
10558391
10558481
+
87
7.30E-66
99
91
55807
55866
-
10
10558617
10558676
+
48
7.30E-66
95
60
84416
87815
+
10
10560130
10563527
+
3319
0
99
3407
174
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
127306
130705
-
10
10560130
10563527
+
3319
0
99
3407
87851
89655
+
10
10563564
10565366
+
1784
0
100
1804
125466
127270
-
10
10563564
10565366
+
1784
0
100
1804
89702
92558
+
10
10565412
10568268
+
2803
0
100
2859
122563
125419
-
10
10565412
10568268
+
2803
0
100
2859
92572
92998
+
10
10568265
10568690
+
414
0
99
426
122123
122549
-
10
10568265
10568690
+
414
0
99
426
93007
93374
+
10
10568702
10569068
+
351
0
99
367
121747
122114
-
10
10568702
10569068
+
351
0
99
367
93382
98367
+
10
10569081
10574068
+
4898
0
100
4990
116754
121739
-
10
10569081
10574068
+
4898
0
100
4990
98383
100002
+
10
10574085
10575706
+
1606
0
100
1622
114302
116738
-
10
10574085
10576524
+
2420
0
100
2440
100002
101106
+
10
10575707
10576811
+
1093
0
100
1105
100618
100670
-
10
10576324
10576375
+
44
0
96
52
114451
114503
+
10
10576324
10576375
+
44
1.50E-11
96
52
114015
114240
-
10
10576587
10576811
+
217
0
99
225
113502
114007
-
10
10576820
10577324
+
505
0
100
505
101114
101393
+
10
10576820
10577098
+
279
0
100
279
111573
113486
-
10
10577341
10579254
+
1890
0
100
1914
107502
111564
-
10
10579264
10583331
+
4012
0
100
4068
107439
107486
-
10
10583348
10583394
+
47
0
100
47
106397
107431
-
10
10583407
10584440
+
1030
0
100
1034
104191
106389
-
10
10584449
10586650
+
2136
0
99
2204
105762
105794
+
10
10585044
10585075
+
32
0
100
32
100865
100881
-
10
10586554
10586569
+
16
0
100
16
114240
114256
+
10
10586554
10586569
+
16
0
100
16
103904
104131
-
10
10586712
10586938
+
227
0
100
227
103196
103896
-
10
10586948
10587648
+
689
0
100
701
103055
103188
-
10
10587657
10587789
+
133
0
100
133
102137
103047
-
10
10587798
10588707
+
902
0
100
910
101699
102129
-
10
10588716
10589145
+
419
0
99
431
175
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
101849
101869
+
10
10588976
10588995
101500
101690
-
10
10589155
101279
101439
-
10
113728
113842
+
110566
110583
51247
Stats
Ori
Score
E-val
%ID
Length
+
20
0
100
20
10589344
+
186
0
99
190
10589406
10589565
+
160
0
100
160
10
10589452
10589565
+
114
0
100
114
-
10
10603436
10603452
+
17
0
100
17
51526
+
10
11458019
11458295
+
227
2.10E-122
95
279
28486
28603
-
10
11563244
11563361
+
102
1.30E-74
97
118
28418
28485
-
10
11563709
11563776
+
60
1.30E-74
97
68
93085
93247
+
10
11643416
11643577
+
138
2.20E-69
96
162
121874
122036
-
10
11643416
11643577
+
138
4.50E-116
96
162
109367
109384
-
10
11682861
11682877
+
17
1.70E-65
100
17
110816
111004
-
10
11682951
11683140
+
81
4.50E-116
85
197
110745
110787
-
10
11683167
11683208
+
38
4.50E-116
98
42
103667
103683
-
10
11712171
11712186
+
16
4.50E-116
100
16
109827
109843
-
10
11724863
11724878
+
16
3.50E-115
100
16
90057
90138
+
10
12599497
12599578
-
51
1.50E-17
90
83
24126
24251
+
10
13460493
13460617
+
110
3.30E-58
97
126
40989
41024
+
10
13521758
13521793
+
36
3.30E-58
100
36
85606
85674
+
10
13698148
13698215
+
68
1.10E-27
100
68
24126
24251
+
10
13703588
13703712
+
102
2.50E-71
95
126
42085
42148
+
10
13832090
13832153
+
36
2.50E-71
89
64
42169
42198
+
10
13832246
13832275
+
30
6.70E-64
100
30
42169
42242
+
10
13832552
13832626
+
43
2.50E-71
89
75
3347
3445
-
10
14029109
14029207
+
99
7.50E-43
100
99
50597
50692
+
10
14204181
14204277
+
73
2.80E-43
94
97
66644
66745
-
10
14204441
14204541
+
93
1.50E-42
98
101
77415
77569
-
10
14206196
14206350
+
87
5.50E-39
89
159
24126
24251
-
10
14691690
14691814
+
102
3.90E-45
95
126
76341
76527
-
10
14876875
14877060
+
170
1.90E-88
98
186
88790
88862
+
10
15555018
15555089
+
68
1.10E-27
99
72
17864
18378
+
10
15775898
15776412
+
483
2.30E-268
98
515
21308
21383
-
10
15786560
15786634
+
48
2.40E-14
91
76
176
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
71879
72218
-
10
15963166
15963510
+
192
1.50E-101
89
348
1739
1784
-
10
15973520
15973565
+
46
1.50E-12
100
46
70422
70490
+
10
16150197
16150264
+
68
1.10E-27
100
68
33263
33335
-
10
16624196
16624268
-
54
8.20E-16
93
74
121163
121179
+
10
16928798
16928813
+
16
8.10E-105
100
16
100159
100175
+
10
16957343
16957358
+
16
2.90E-106
100
16
92749
92963
-
10
16988801
16989014
+
206
6.80E-110
99
214
122158
122372
+
10
16988801
16989014
+
206
2.90E-106
99
214
56292
56410
+
10
17020993
17021108
+
78
1.30E-33
92
118
44040
44093
-
10
18127919
18127972
-
46
1.80E-24
96
54
44099
44141
-
10
18128220
18128261
-
39
1.80E-24
98
43
54660
54799
+
10
18586124
18586260
-
111
2.70E-53
95
139
10505
10777
-
10
18686983
18687253
+
202
6.00E-105
93
274
49511
50000
+
10
19955884
19956374
-
487
0
100
491
49286
49502
+
10
19956383
19956599
-
217
0
100
217
46504
49273
+
10
19956611
19959382
-
2752
0
100
2772
46286
46495
+
10
19959391
19959600
-
206
0
100
210
46193
46276
+
10
19959610
19959693
-
84
0
100
84
45968
46164
+
10
19959722
19959918
-
197
0
100
197
45613
45946
+
10
19959940
19960273
-
330
0
100
334
44892
45574
+
10
19960312
19960994
-
683
0
100
683
44420
44883
+
10
19961003
19961466
-
453
0
99
465
43909
44411
+
10
19961475
19961975
-
495
0
100
503
43700
43898
+
10
19961986
19962184
-
199
0
100
199
42477
43683
+
10
19962201
19963399
-
1157
0
99
1209
41535
42468
+
10
19963407
19964340
-
920
0
100
936
41374
41491
+
10
19964384
19964501
-
118
0
100
118
36616
41364
+
10
19964511
19969259
-
4687
0
100
4751
36541
36607
+
10
19969268
19969334
-
67
0
100
67
35972
36531
+
10
19969344
19969903
-
556
0
100
560
34194
35936
+
10
19969939
19971681
-
1735
0
100
1743
33618
34184
+
10
19971691
19972258
-
556
0
99
568
177
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
33399
33577
+
10
19972299
19972477
-
175
0
99
179
32674
33364
+
10
19972512
19973201
-
683
0
100
691
32512
32640
+
10
19973235
19973363
-
129
0
100
129
32022
32511
+
10
19973364
19973853
-
490
0
100
490
31514
32013
+
10
19973862
19974361
-
500
0
100
500
31276
31505
+
10
19974370
19974599
-
230
0
100
230
29541
31267
+
10
19974608
19976334
-
1723
0
100
1727
29149
29503
+
10
19976372
19976726
-
355
0
100
355
29085
29137
+
10
19976738
19976790
-
53
0
100
53
125462
125497
+
10
20122031
20122065
-
35
0
100
35
89669
92998
-
10
20122076
20125406
-
3304
0
100
3332
122123
125418
+
10
20122110
20125406
-
3270
0
100
3298
93007
93374
-
10
20125416
20125782
-
363
0
100
367
121747
122114
+
10
20125416
20125782
-
363
0
100
367
93382
98367
-
10
20125791
20130781
-
4941
0
100
4993
116754
121739
+
10
20125791
20130781
-
4941
0
100
4993
98383
100002
-
10
20130798
20132418
-
1606
0
100
1622
114544
116738
+
10
20130798
20132993
-
2174
0
100
2198
100002
100577
-
10
20132419
20132993
-
568
0
100
576
50474
51107
+
10
20132992
20133626
-
619
0
99
635
50002
50466
+
10
20133634
20134097
-
464
0
100
464
120912
120931
-
10
20136649
20136667
-
19
0
100
19
111208
111226
+
10
20141075
20141092
-
18
0
100
18
12536
12687
-
10
20253460
20253609
+
94
9.70E-40
90
154
214
1129
-
10
20826753
20827669
+
861
0
98
917
63
204
-
10
20827669
20827810
+
138
0
99
142
18
54
-
10
20827810
20827846
+
33
0
97
37
80615
80904
+
10
21006103
21006391
+
277
0
99
289
134217
134506
-
10
21006103
21006391
+
277
0
99
289
80914
82194
+
10
21006402
21007680
+
1192
0
98
1280
132927
134207
-
10
21006402
21007680
+
1192
0
98
1280
113356
113372
-
10
21010368
21010383
+
16
0
100
16
178
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
123437
123452
-
10
21051943
21051957
100259
100274
-
10
21059170
116391
116406
-
10
109603
109618
-
108990
109005
107362
Stats
Ori
Score
E-val
%ID
Length
+
15
0
100
15
21059184
+
15
0
100
15
21072716
21072730
+
15
0
100
15
10
21078591
21078605
+
15
0
100
15
-
10
21079189
21079203
+
15
0
100
15
107377
-
10
21083939
21083953
+
15
0
100
15
101708
101723
-
10
21084751
21084765
+
15
0
100
15
101511
101526
-
10
21096887
21096901
+
15
0
100
15
97020
97251
-
10
21394431
21394662
-
216
7.50E-116
98
232
117870
118101
+
10
21394431
21394662
-
216
1.10E-111
98
232
5857
5916
-
10
21555674
21555734
-
49
1.00E-14
95
61
8623
11168
+
10
21937037
21939581
-
2491
0
99
2547
8561
8607
+
10
21939597
21939643
-
43
0
98
47
8212
8513
+
10
21939691
21939992
-
302
0
100
302
8093
8203
+
10
21940000
21940110
-
111
0
100
111
7592
8037
+
10
21940166
21940611
-
446
0
100
446
44496
44524
-
10
21940346
21940374
-
29
2.80E-07
100
29
7513
7582
+
10
21940620
21940689
-
70
0
100
70
6854
7480
+
10
21940722
21941349
-
608
0
99
628
6529
6807
+
10
22149286
22149563
+
251
1.70E-133
97
279
22410
23309
-
10
22264916
22265816
+
865
0
99
901
40601
40668
+
10
22345713
22345780
+
45
7.80E-13
91
69
81560
83666
+
10
22441033
22443138
+
2054
0
99
2106
131455
133561
-
10
22441033
22443138
+
2054
0
99
2106
55866
55957
-
10
22442149
22442239
+
87
3.30E-56
99
91
55807
55866
-
10
22442375
22442434
+
48
3.30E-56
95
60
102051
102066
-
10
22452663
22452677
+
15
0
100
15
103680
103696
-
10
22470017
22470032
+
16
0
100
16
113983
113998
-
10
22472206
22472220
+
15
0
100
15
114565
114585
-
10
22487957
22487976
+
20
0
100
20
104676
104691
-
10
22504319
22504333
+
15
0
100
15
116391
116406
-
10
22519963
22519977
+
15
0
100
15
179
Chloroplast
Start
Rice Chromosome
End
Ori
Name
Start
End
104716
104731
-
10
22524144
22524158
101781
101802
-
10
22530803
21472
21538
-
11
9083
9146
+
37311
37544
30655
Stats
Ori
Score
E-val
%ID
Length
+
15
0
100
15
22530823
+
17
0
95
21
618773
618839
-
63
3.10E-21
99
67
11
1566392
1566455
+
48
3.90E-15
94
64
+
11
2061106
2061339
+
226
8.10E-116
99
234
30772
-
11
2368623
2368741
+
44
1.80E-17
84
120
30549
30589
-
11
2368789
2368829
+
29
1.80E-17
93
41
87346
87436
-
11
2404328
2404415
+
58
1.00E-21
91
90
81026
81131
+
11
3496168
3496272
+
97
6.00E-45
98
105
22265
22495
-
11
4336140
4336370
+
199
4.50E-100
97
231
59400
59657
-
11
4449811
4450065
+
213
8.30E-174
96
257
59227
59401
-
11
4453810
4453983
+
120
8.30E-174
92
176
36376
36526
+
11
4620613
4620763
-
111
1.50E-48
93
151
36153
36526
+
11
4621887
4622263
-
260
5.60E-136
92
380
66893
67039
+
11
4760633
4760772
-
102
6.30E-48
92
146
23847
23993
-
11
4837106
4837253
-
132
1.90E-61
97
148
98472
98528
+
11
4843751
4843806
-
48
9.40E-16
96
56
84868
84976
-
11
4843806
4843913
-
104
4.10E-49
99
108
41127
41256
-
11
5741814
5741943
+
99
3.10E-42
94
131
25591
25671
-
11
5944519
5944598
+
34
2.50E-18
85
82
25527
25567
-
11
5944599
5944639
+
37
2.50E-18
98
41
64218
64368
+
11
6109623
6109773
+
95
9.30E-44
91
151
85040
85206
-
11
6586435
6586600
-
166
4.60E-86
100
166
21434
21533
+
11
7071878
7071976
+
48
5.50E-12
87
100
37555
37711
-
11
7133805
7133960
-
105
1.00E-49
92
157
37975
38016
+
11
7882439
7882480
-
30
0.0015
93
42
4353
4658
-
11
8515253
8515557
+
274
9.60E-157
97
306
4279
4318
-
11
8515592
8515631
+
36
9.60E-157
98
40
17163
17202
-
11
8819776
8819815
+
36
8.00E-09
98
40
45217
45296
+
11
9138468
9138549
+
54
1.10E-40
91
82
45332
45431
+
11
9138562
9138660
+
57
1.10E-40
89
101
180
Chloroplast
Start
Rice Chromosome
End
Ori
Name
77758
78179
-
7063
7236
75283
Stats
Start
End
Ori
Score
E-val
%ID
Length
11
9284848
9285268
-
334
3.60E-186
95
422
-
11
9446167
9446340
+
158
1.70E-77
98
174
75640
+
11
9476321
9476677
+
321
1.80E-187
97
357
48545
48789
+
11
10199044
10199288
+
221
7.70E-119
98
245
53525
53598
+
11
10214319
10214392
+
58
2.00E-31
95
74
51182
51299
-
11
10835550
10835666
-
113
1.80E-54
99
117
28728
28797
+
11
10836176
10836245
+
43
7.70E-10
90
71
21069
21227
+
11
10836405
10836563
+
151
2.30E-71
99
159
71981
72032
-
11
11874153
11874203
-
51
2.40E-98
100
51
20910
20963
-
11
11876007
11876060
-
54
4.10E-17
100
54
53188
53247
-
11
11876302
11876360
-
51
1.50E-113
97
59
95546
95755
-
11
11971370
11971579
-
155
1.50E-113
93
211
61650
61868
-
11
12031866
12032084
+
104
4.10E-49
87
220
17685
17872
+
11
12437600
12437786
-
176
6.50E-88
98
188
35693
35819
-
11
12437894
12438020
-
107
1.30E-48
96
127
5643
5769
+
11
13455428
13455553
+
48
3.90E-38
84
128
5863
5917
+
11
13455638
13455693
+
40
3.90E-38
93
56
5929
5966
+
11
13455701
13455738
+
34
3.90E-38
97
38
73673
74039
+
11
13588678
13589042
+
326
2.10E-181
97
366
70527
71017
+
11
14048766
14049251
+
466
8.00E-265
99
490
16133
16450
-
11
14052725
14053042
+
314
3.00E-169
100
318
4412
4477
+
11
14258152
14258214
-
38
5.20E-17
89
66
4360
4400
+
11
14258248
14258288
-
33
5.20E-17
95
41
38697
38815
+
11
14334185
14334302
-
56
1.60E-20
87
120
36030
36116
-
11
15289994
15290080
+
83
6.90E-33
99
87
90484
90602
+
11
15786026
15786142
+
77
5.00E-33
91
121
19419
19680
-
11
16034382
16034639
+
147
4.10E-71
89
267
29149
29218
-
11
16698544
16698614
+
36
1.50E-07
88
72
47824
47901
-
11
17144115
17144192
+
43
2.90E-11
89
79
44958
45056
-
11
17403354
17403449
+
51
2.90E-15
88
99
2049
2284
+
11
18044435
18044670
+
196
6.10E-104
96
236
8212
8256
-
11
18181909
18181953
+
41
3.50E-59
98
45
181
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
8083
8200
-
11
18181965
18182082
+
102
3.50E-59
97
118
70640
70732
+
11
18187236
18187327
+
88
1.40E-39
99
92
70735
70840
+
11
18187331
18187434
+
82
5.20E-36
94
106
55674
55739
-
11
18856882
18856946
+
57
0
97
65
54508
55537
-
11
18857084
18858119
+
812
0
95
1036
52998
53070
+
11
18892179
18892250
+
56
0
94
72
53147
53330
+
11
18893556
18893738
+
128
0
92
184
53424
53919
+
11
18893832
18894326
+
386
0
94
498
53918
53993
+
11
18894308
18894382
+
67
0
97
75
54021
54612
+
11
18894404
18894994
+
460
0
94
592
54607
55278
+
11
18900123
18900790
+
517
0
94
673
55285
55537
+
11
18900791
18901042
+
236
0
98
252
55600
55667
+
11
18901105
18901171
+
51
0
94
67
55674
56187
+
11
18901179
18901694
+
399
0
94
519
82902
82962
-
11
18901314
18901372
+
48
9.50E-16
95
60
65808
65907
-
11
18936710
18936807
+
51
1.60E-17
88
99
25243
25288
+
11
19412959
19413004
+
38
2.20E-06
96
46
16879
16921
+
11
19854142
19854184
+
35
1.20E-07
95
43
91555
91608
-
11
19860220
19860272
+
53
1.00E-18
100
53
32507
32628
-
11
21314809
21314929
+
50
1.30E-12
85
122
32446
32628
-
11
21324949
21325136
+
62
1.10E-20
83
190
6919
7313
-
11
21974970
21975364
+
391
2.00E-213
100
395
56353
56568
+
11
22610837
22611052
-
176
5.10E-92
95
216
7810
8037
+
11
23128111
23128339
+
201
7.60E-106
97
229
26285
26425
-
11
24394136
24394276
-
74
1.70E-43
88
142
26443
26540
-
11
24394286
24394384
-
43
1.70E-43
86
99
44892
45002
+
11
24724460
24724569
+
60
6.10E-21
88
112
66742
66887
-
11
24847179
24847322
+
122
7.70E-60
96
146
67011
67120
+
11
25256106
25256214
+
101
2.50E-47
98
109
86906
87000
+
11
27261092
27261185
-
94
3.70E-43
100
94
21472
21538
+
12
656803
656869
+
55
6.30E-20
96
67
182
Chloroplast
Start
Rice Chromosome
End
Ori
Name
21124
21170
+
29290
29413
29426
Stats
Start
End
Ori
Score
E-val
%ID
Length
12
893103
893149
+
47
2.40E-13
100
47
-
12
2838948
2839071
-
90
3.60E-55
93
126
29487
-
12
2839076
2839135
-
46
3.60E-55
94
62
21624
21696
-
12
3001980
3002049
-
37
1.10E-08
88
73
87298
87438
+
12
3091210
3091350
-
94
1.10E-68
92
142
74339
74393
+
12
3115432
3115485
-
50
1.40E-61
98
54
74285
74351
+
12
3115484
3115549
-
62
1.10E-68
98
66
22732
22807
+
12
3115696
3115771
-
76
9.20E-29
100
76
63517
63690
+
12
4509038
4509212
-
117
1.10E-74
92
177
63442
63507
+
12
4509221
4509285
-
49
1.10E-74
94
65
61175
61331
-
12
4511718
4511876
-
91
5.90E-186
89
163
61334
61513
-
12
4511867
4512045
-
131
5.90E-186
93
179
72059
72221
-
12
4566706
4566867
-
150
5.90E-186
98
162
33409
33458
-
12
4676447
4676496
-
50
7.50E-42
100
50
24250
24427
+
12
4678416
4678593
-
166
5.10E-84
98
178
34310
34372
-
12
4679140
4679202
-
63
7.50E-42
100
63
84516
84670
-
12
4750563
4750717
-
80
9.00E-50
88
156
15420
15491
-
12
4815555
4815626
-
72
4.40E-101
100
72
15500
15647
-
12
4815635
4815782
-
136
4.40E-101
98
148
56015
56351
+
12
5123417
5123753
+
301
1.70E-166
97
337
48881
49273
-
12
5607904
5608296
-
381
0
99
393
49286
49502
-
12
5608306
5608522
-
217
0
100
217
49511
50000
-
12
5608530
5609021
-
472
0
99
492
50002
50466
-
12
5609016
5609479
-
464
0
100
464
50474
53330
-
12
5609487
5612344
-
2774
0
99
2858
53431
53871
-
12
5612446
5612885
-
402
0
98
442
53859
53993
-
12
5612888
5613021
-
134
0
100
134
54010
55539
-
12
5613040
5614568
-
1493
0
99
1529
55672
55841
-
12
5614702
5614870
-
161
0
99
169
132159
132191
-
12
5614837
5614868
-
32
5.60E-05
100
32
98924
100002
-
12
5614872
5615950
-
1039
0
99
1079
114016
116197
+
12
5614872
5617054
-
2107
0
99
2183
183
Chloroplast
Start
Rice Chromosome
End
Ori
Name
100002
101106
-
100618
100670
114451
Stats
Start
End
Ori
Score
E-val
%ID
Length
12
5615951
5617055
-
1069
0
99
1105
+
12
5616568
5616619
-
44
6.80E-12
96
52
114503
-
12
5616568
5616619
-
44
0
96
52
101114
101135
-
12
5617064
5617084
-
21
0
100
21
101135
101439
-
12
5617074
5617378
-
297
0
99
305
113731
113961
+
12
5617099
5617328
-
226
0
100
230
101500
101690
-
12
5617439
5617628
-
186
0
99
190
101699
102129
-
12
5617638
5618069
-
405
0
98
433
101849
101869
+
12
5617789
5617808
-
20
0
100
20
102137
103047
-
12
5618078
5618987
-
874
0
99
910
103055
103188
-
12
5618996
5619128
-
129
0
99
133
103196
103896
-
12
5619137
5619836
-
680
0
99
700
103904
103997
-
12
5619845
5619937
-
93
0
100
93
104018
104131
-
12
5619934
5620046
-
113
0
100
113
104191
106389
-
12
5620107
5622308
-
2112
0
99
2204
105762
105794
+
12
5621682
5621713
-
32
0
100
32
106397
107431
-
12
5622317
5623351
-
1007
0
99
1035
107439
107488
-
12
5623363
5623411
-
49
0
100
49
107502
108552
-
12
5623427
5624475
-
1018
0
99
1050
108556
111564
-
12
5624466
5627480
-
2911
0
99
3015
111573
113486
-
12
5627489
5629403
-
1859
0
99
1915
113502
114007
-
12
5629419
5629923
-
477
0
99
505
101114
101393
+
12
5629645
5629923
-
267
0
99
279
100002
101106
+
12
5629932
5631031
-
1046
0
99
1106
114015
114240
-
12
5629932
5630152
-
205
0
98
225
114302
116738
-
12
5630215
5632650
-
2325
0
99
2441
114451
114503
+
12
5630362
5630413
-
44
6.90E-11
96
52
100618
100670
-
12
5630362
5630413
-
44
0
96
52
98383
100000
+
12
5631034
5632650
-
1544
0
99
1620
97208
98367
+
12
5632667
5633827
-
1106
0
99
1162
116754
117913
-
12
5632667
5633827
-
1106
0
99
1162
96484
97195
+
12
5633819
5634531
-
665
0
98
713
184
Chloroplast
Start
Rice Chromosome
End
Ori
Name
117926
118637
-
58233
58674
58693
Stats
Start
End
Ori
Score
E-val
%ID
Length
12
5633819
5634531
-
665
0
98
713
-
12
5634529
5634971
-
431
0
99
443
59130
-
12
5634993
5635429
-
429
0
100
437
59161
60031
-
12
5635461
5636328
-
834
0
99
870
60039
60651
-
12
5636337
5636948
-
592
0
99
612
60680
60784
-
12
5636978
5637081
-
104
0
100
104
60824
61044
-
12
5637079
5637298
-
212
0
99
220
61083
63058
-
12
5637329
5639302
-
1935
0
99
1975
126366
126412
+
12
5639228
5639273
-
46
3.40E-12
100
46
63066
63507
-
12
5639311
5639751
-
430
0
99
442
115928
115944
+
12
5639501
5639516
-
16
3.40E-12
100
16
63515
63772
-
12
5639760
5640016
-
257
0
100
257
63780
65609
-
12
5640025
5641854
-
1764
0
99
1832
65618
69533
-
12
5641863
5645779
-
3738
0
99
3922
112084
112100
+
12
5644637
5644652
-
16
0
100
16
69541
71371
-
12
5645788
5647617
-
1741
0
99
1833
102899
102915
-
12
5646162
5646177
-
16
0
100
16
71469
71626
-
12
5647715
5647871
-
157
0
100
157
71621
71750
-
12
5651002
5651130
-
129
0
100
129
71786
73482
-
12
5651167
5652867
-
1639
0
99
1703
73482
74265
+
12
5652868
5653649
+
755
0
99
783
74282
74547
+
12
5653667
5653931
+
245
0
98
265
74585
75875
+
12
5653970
5655263
+
1223
0
99
1295
75987
76111
+
12
5655375
5655498
+
120
0
99
124
76045
76222
+
12
5655494
5655669
+
169
0
99
177
76238
76511
+
12
5655685
5655957
+
261
0
99
273
76598
77696
+
12
5656042
5657140
+
1087
0
100
1099
77724
77875
+
12
5657170
5657320
+
136
0
97
152
88806
89010
+
12
6471409
6471614
+
148
2.40E-75
93
208
70233
70507
+
12
6487565
6487837
+
176
5.10E-92
91
276
91978
92075
-
12
6639897
6639992
+
93
1.50E-42
99
97
41540
41586
+
12
7167881
7167927
+
43
9.50E-10
98
47
185
Chloroplast
Start
Rice Chromosome
End
Ori
Name
18129
18186
+
94798
94860
51367
Stats
Start
End
Ori
Score
E-val
%ID
Length
12
7624831
7624889
+
35
6.10E-07
90
59
+
12
8038759
8038820
-
62
4.30E-24
100
62
51879
-
12
8527031
8527541
+
472
0
98
512
50861
51355
-
12
8527545
8528031
+
411
0
96
495
50596
50854
-
12
8528027
8528280
+
165
0
91
261
82635
82763
+
12
8554381
8554509
+
101
2.50E-47
95
129
55870
55955
-
12
8554424
8554509
+
66
1.80E-26
94
86
70874
71074
-
12
9250829
9251030
-
138
2.30E-165
92
202
90496
90700
-
12
9363305
9363508
-
181
2.30E-165
97
205
43013
43044
-
12
10478235
10478266
+
32
2.20E-55
100
32
42853
42936
-
12
10478609
10478692
+
60
2.20E-55
93
84
42775
42815
-
12
10478709
10478749
+
37
2.20E-55
98
41
42720
42764
-
12
10478749
10478793
+
41
2.20E-55
98
45
115281
115298
+
12
10991795
10991811
-
17
0
100
17
111524
111539
+
12
10996862
10996876
-
15
0
100
15
126802
126818
+
12
11040090
11040105
-
16
0
100
16
57099
57540
+
12
11084561
11085000
-
433
0
100
441
56426
57010
+
12
11085079
11085663
-
573
0
99
585
109010
110805
+
12
11085721
11087521
-
1765
0
100
1801
87852
87991
-
12
11138210
11138347
-
108
1.70E-51
94
140
95956
96012
-
12
11220654
11220709
-
48
9.50E-16
96
56
45647
45946
-
12
11281482
11281781
-
288
0
99
300
45968
46165
-
12
11281803
11281995
-
178
0
97
198
46201
46276
-
12
11282029
11282104
-
76
0
100
76
46286
46495
-
12
11282114
11282323
-
202
0
99
210
46504
49273
-
12
11282332
11285103
-
2705
0
99
2773
50002
50466
-
12
11284474
11284937
-
460
0
100
464
50474
52120
-
12
11284945
11286592
-
1600
0
99
1648
49286
49502
-
12
11285112
11285328
-
217
0
100
217
49511
50000
-
12
11285337
11285827
-
475
0
99
491
73101
73502
+
12
11286592
11286992
-
393
2.50E-221
100
401
3553
4059
+
12
11407743
11408247
-
479
0
99
507
186
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
2941
3535
+
12
11408265
11408859
-
567
0
99
595
16
2932
+
12
11408869
11411785
-
2750
0
99
2918
80615
80903
-
12
11410447
11410734
-
268
0
98
288
134218
134506
+
12
11410447
11410734
-
268
0
98
288
80912
81955
-
12
11410744
11411788
-
969
0
98
1045
133166
134209
+
12
11410744
11411788
-
969
0
98
1045
81970
82051
-
12
11411783
11411862
-
69
0
96
81
133070
133151
+
12
11411783
11411862
-
69
0
96
81
128454
128469
+
12
11412495
11412509
-
15
0
100
15
108584
108604
+
12
11424829
11424847
-
16
0
95
20
115030
115045
+
12
11431259
11431273
-
15
0
100
15
112863
112878
+
12
11455351
11455365
-
15
0
100
15
105516
105532
+
12
11465731
11465746
-
16
0
100
16
105516
105532
+
12
11486588
11486603
-
16
0
100
16
126865
126880
+
12
11491465
11491479
-
15
0
100
15
114241
114256
+
12
11507876
11507890
-
15
0
100
15
104272
104288
+
12
11527192
11527207
-
16
0
100
16
100865
100880
+
12
11527193
11527207
-
15
0
100
15
123450
123465
+
12
11530921
11530935
-
15
0
100
15
34039
34183
-
12
11726216
11726359
-
91
1.00E-49
90
147
34194
34226
-
12
11726368
11726400
-
29
1.00E-49
97
33
10696
10748
+
12
12075683
12075734
-
45
2.30E-11
96
53
86705
86811
+
12
12771073
12771178
+
98
2.80E-56
98
106
127499
127517
+
12
13305058
13305075
-
18
4.20E-06
100
18
100864
100881
-
12
13328829
13328845
-
17
9.30E-245
100
17
21881
22039
+
12
13341442
13341600
-
159
6.60E-200
100
159
122462
122492
+
12
13343057
13343086
-
26
0.0079
97
30
102990
103047
-
12
13343832
13343888
-
57
9.30E-245
100
57
103055
103134
-
12
13343897
13343975
-
75
9.30E-245
99
79
49097
49224
+
12
13344955
13345076
-
77
0
90
129
21431
21660
+
12
13346025
13346254
-
222
6.60E-200
99
230
14604
14643
-
12
13346389
13346428
-
40
7.70E-12
100
40
187
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
47078
47837
+
12
13348640
13349400
-
715
0
98
763
117204
117275
-
12
13350473
13350543
-
35
5.10E-121
87
71
117305
117324
-
12
13350574
13350592
-
19
5.10E-121
100
19
117353
117452
-
12
13350622
13350720
-
30
5.10E-121
82
102
54876
55053
-
12
13350937
13351113
-
169
3.00E-122
99
177
123337
123383
+
12
13351521
13351566
-
26
4.20E-06
89
46
103666
103896
-
12
13353424
13353653
-
226
9.30E-245
100
230
103904
103957
-
12
13353662
13353714
-
53
9.30E-245
100
53
96714
96817
+
12
13370104
13370206
-
95
1.60E-79
98
103
118304
118407
-
12
13370104
13370206
-
95
9.30E-245
98
103
122484
122536
+
12
13376001
13376051
-
21
4.20E-06
85
53
64218
64299
-
12
13377314
13377394
-
77
3.00E-122
99
81
55408
55464
-
12
13377395
13377450
-
56
8.80E-110
100
56
66945
67028
+
12
13378556
13378638
-
79
1.60E-79
99
83
48658
48811
+
12
13384969
13385122
-
130
2.60E-97
96
154
48571
48847
+
12
13386768
13387044
-
225
2.60E-263
95
277
70960
71151
+
12
13389175
13389365
-
184
8.70E-97
99
192
54740
55212
-
12
13389650
13390120
-
448
0
99
472
22387
22522
+
12
13391510
13391645
-
132
2.60E-263
99
136
81702
81829
-
12
13392730
13392856
-
123
0
99
127
133292
133419
+
12
13392730
13392856
-
123
1.30E-114
99
127
102394
102410
+
12
13393108
13393123
-
16
2.50E-57
100
16
47936
48059
+
12
13393699
13393822
-
112
1.70E-251
98
124
73813
73997
-
12
13396830
13397013
-
180
0
99
184
9938
10011
+
12
13397406
13397479
-
66
1.50E-215
97
74
50596
50854
-
12
13397445
13397698
-
165
6.00E-187
91
261
81664
81759
-
12
13398980
13399074
-
95
0
100
95
133362
133457
+
12
13398980
13399074
-
95
2.90E-98
100
95
20265
20386
-
12
13399410
13399531
-
122
2.70E-115
100
122
85235
85326
-
12
13399630
13399720
-
91
0
100
91
129795
129886
+
12
13399630
13399720
-
91
1.30E-114
100
91
129822
129873
-
12
13399643
13399693
-
19
7.40E-81
84
55
188
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
119770
119786
+
12
13401203
13401218
-
16
5.20E-100
100
16
122941
122994
+
12
13403192
13403244
-
41
1.30E-114
94
53
117664
117710
-
12
13404538
13404585
-
40
2.60E-93
96
48
114284
114300
+
12
13405700
13405715
-
16
1.30E-114
100
16
100821
100837
-
12
13405700
13405715
-
16
6.00E-78
100
16
55612
55666
-
12
13407443
13407496
-
50
1.80E-294
98
54
104270
104286
-
12
13409215
13409230
-
16
6.00E-78
100
16
11487
11638
+
12
13410040
13410191
-
148
2.60E-263
99
152
18096
18156
-
12
13410894
13410951
-
41
5.30E-69
92
61
81590
81651
-
12
13410912
13410972
-
57
0
98
61
133470
133531
+
12
13410912
13410972
-
57
1.10E-18
98
61
81829
81990
+
12
13410973
13411133
-
157
5.30E-93
99
161
133131
133292
-
12
13410973
13411133
-
157
2.60E-93
99
161
30604
30738
-
12
13413758
13413892
-
115
2.70E-115
96
135
48024
48212
+
12
13417952
13418144
-
161
2.30E-202
96
193
119690
119706
-
12
13424653
13424668
-
16
4.10E-10
100
16
127500
127517
+
12
13434075
13434091
-
17
5.20E-100
100
17
114159
114175
+
12
13478051
13478066
-
16
1.30E-114
100
16
35225
35263
-
12
13823457
13823495
+
31
1.30E-05
95
39
21691
21730
-
12
13984167
13984207
+
33
3.50E-06
95
41
104925
104941
-
12
16564745
16564760
-
16
0
100
16
81430
82040
+
12
16609595
16610204
-
578
0
99
610
133081
133691
-
12
16609595
16610204
-
578
0
99
610
81430
82040
+
12
16630225
16630834
-
578
0
99
610
133081
133691
-
12
16630225
16630834
-
578
0
99
610
87260
87390
+
12
16855787
16855915
+
122
7.60E-60
98
130
2941
2999
+
12
16890725
16890786
+
38
8.90E-11
90
62
3056
3103
-
12
16969073
16969120
-
29
3.70E-07
90
49
64811
64918
-
12
17957634
17957737
-
79
2.70E-75
93
107
64965
65093
-
12
17957740
17957867
-
88
2.70E-75
92
128
45003
45053
-
12
18085161
18085212
+
36
1.80E-06
92
52
80178
80600
+
12
18258615
18259036
-
341
1.70E-197
95
425
189
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
36616
36665
-
12
18579750
18579801
+
40
1.20E-29
94
52
36542
36607
-
12
18579809
18579876
+
40
1.20E-29
90
68
36498
36530
-
12
18579886
18579918
+
29
1.20E-29
97
33
15786
15875
+
12
18580029
18580118
+
78
2.00E-28
97
90
72195
72306
+
12
18584245
18584355
+
75
7.70E-32
92
111
2457
2609
+
12
18754641
18754792
-
60
6.80E-21
85
156
13504
13589
+
12
18885044
18885129
+
50
9.70E-15
90
86
35248
35491
-
12
19160285
19160529
+
217
7.30E-112
97
245
91687
92036
+
12
19164907
19165255
+
333
1.40E-185
99
349
123085
123434
-
12
19164907
19165255
+
333
4.60E-183
99
349
13997
14139
-
12
19257551
19257692
+
100
0
92
144
13883
13987
-
12
19257700
19257799
+
73
0
92
105
13503
13896
-
12
19258025
19258420
+
329
0
96
397
12196
13482
-
12
19258424
19259715
+
1100
0
96
1296
36195
36238
-
12
19259079
19259122
+
36
2.90E-144
95
44
11831
12129
-
12
19259710
19260005
+
251
0
96
299
15040
15080
-
12
19260011
19260050
+
29
9.50E-14
93
41
47665
47823
-
12
19710641
19710797
+
93
1.30E-38
89
161
76074
76222
+
12
20423644
20423791
-
144
3.00E-82
99
148
77042
77462
-
12
20444678
20445097
-
420
2.10E-237
100
420
76342
76511
+
12
20445114
20445282
-
169
7.50E-88
100
169
18730
18775
+
12
20481121
20481166
-
38
5.50E-125
96
46
18642
18731
+
12
20481158
20481248
-
75
5.50E-125
96
91
18464
18624
+
12
20481264
20481424
-
157
5.50E-125
99
161
18985
19352
+
12
20498744
20499111
-
364
6.70E-202
100
368
99204
99290
+
12
20499851
20499936
-
86
2.10E-38
100
86
51221
51293
-
12
20511224
20511295
-
56
1.60E-20
94
72
123253
123270
+
12
20581266
20581282
+
17
2.00E-44
100
17
105157
105175
+
12
20601905
20601922
+
18
1.20E-121
100
18
122359
122392
+
12
20605388
20605420
+
29
1.20E-121
97
33
122462
122536
+
12
20605537
20605609
+
39
1.20E-121
88
75
122632
122701
+
12
20605705
20605773
+
29
1.20E-121
86
69
190
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
122754
122829
+
12
20605898
20605972
+
32
1.20E-121
86
76
92127
92246
-
12
20606018
20606136
+
80
1.40E-57
92
120
122875
122994
+
12
20606018
20606136
+
80
1.20E-121
92
120
123298
123383
+
12
20606435
20606519
+
33
1.20E-121
85
85
91571
91655
-
12
20606605
20606688
+
57
1.40E-57
92
85
123466
123550
+
12
20606605
20606688
+
57
1.20E-121
92
85
123712
123737
+
12
20606819
20606843
+
21
1.20E-121
96
25
123752
123812
+
12
20606981
20607040
+
32
1.20E-121
88
60
33852
33904
+
12
20607208
20607260
+
53
1.10E-15
100
53
130887
130911
+
12
20607523
20607546
+
20
1.20E-121
96
24
32069
32533
+
12
20617031
20617494
+
373
1.10E-205
95
465
128806
128822
+
12
20620556
20620571
+
16
2.40E-119
100
16
120538
120554
+
12
20891603
20891618
+
16
4.10E-31
100
16
104191
104517
-
12
20891726
20892051
+
322
0
100
326
105755
105772
-
12
20891952
20891968
+
17
0
100
17
114240
114256
+
12
20891955
20891970
+
16
4.10E-31
100
16
103904
104131
-
12
20892113
20892339
+
227
0
100
227
103196
103896
-
12
20892347
20893046
+
700
0
100
700
103055
103188
-
12
20893055
20893187
+
133
0
100
133
102137
103047
-
12
20893196
20894105
+
890
0
99
910
101699
102129
-
12
20894114
20894543
+
419
0
99
431
125222
125237
-
12
20894275
20894289
+
15
0
100
15
101849
101869
+
12
20894374
20894393
+
20
0
100
20
101500
101690
-
12
20894553
20894742
+
190
0
100
190
101114
101439
-
12
20894804
20895128
+
325
0
100
325
113728
113961
+
12
20894850
20895082
+
233
0
100
233
127783
127798
-
12
20895117
20895131
+
15
0
100
15
100071
101106
-
12
20895137
20896172
+
1028
0
100
1036
114016
115050
+
12
20895138
20896172
+
1027
0
100
1035
114451
114503
-
12
20895573
20895624
+
44
1.40E-10
96
52
100618
100670
+
12
20895573
20895624
+
44
1.30E-47
96
52
104001
104016
-
12
20902895
20902909
+
15
2.80E-174
100
15
191
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
Score
E-val
%ID
Length
55877
55976
+
12
20909009
20909108
+
92
5.70E-42
98
100
82676
82756
-
12
20909009
20909088
+
76
7.30E-51
99
80
132365
132445
+
12
20909009
20909088
+
76
0
99
80
132418
132433
+
12
20909851
20909865
+
15
0
100
15
124026
124041
+
12
20910135
20910149
+
15
0
100
15
103738
103754
+
12
20914889
20914904
+
16
2.90E-11
100
16
104001
104016
-
12
20917192
20917206
+
15
2.80E-174
100
15
104578
104594
-
12
20922096
20922111
+
16
1.40E-10
100
16
116391
116406
+
12
20946249
20946263
+
15
0
100
15
126629
126644
+
12
20967930
20967944
+
15
0
100
15
106061
106076
-
12
20968679
20968693
+
15
5.00E-10
100
15
104716
104731
+
12
20978395
20978409
+
15
2.90E-11
100
15
116391
116406
+
12
20978471
20978485
+
15
0
100
15
101513
101528
-
12
20990561
20990575
+
15
0
100
15
109979
109996
+
12
20999364
20999380
+
17
2.90E-11
100
17
112006
112021
+
12
21009479
21009493
+
15
2.90E-11
100
15
50866
50924
-
12
21013216
21013273
+
50
7.30E-51
97
58
23407
23921
-
12
21311221
21311734
+
445
1.00E-272
97
517
23332
23409
-
12
21330248
21330325
+
62
1.00E-272
95
78
33852
33904
+
12
21567874
21567926
-
53
1.40E-16
100
53
45494
45574
+
12
22455533
22455610
+
62
1.90E-144
94
82
45613
45845
+
12
22455649
22455881
+
225
1.90E-144
99
233
45494
45574
+
12
22456036
22456114
+
65
3.10E-146
95
81
45613
45845
+
12
22456153
22456385
+
217
1.70E-141
98
233
45494
45574
+
12
22456540
22456618
+
69
1.30E-148
96
81
45613
45845
+
12
22456657
22456889
+
225
1.30E-148
99
233
36938
37032
-
12
22663622
22663716
+
95
2.50E-43
100
95
20018
20193
-
12
23395284
23395459
-
113
3.10E-50
91
177
48971
49084
-
12
23531238
23531356
-
64
6.20E-43
88
120
49097
49233
-
12
23531363
23531491
-
53
6.20E-43
85
137
18730
18775
+
12
23832613
23832658
-
30
1.10E-66
91
46
18642
18728
+
12
23832653
23832739
-
53
1.10E-66
90
89
192
Chloroplast
Start
Rice Chromosome
Start
End
Stats
End
Ori
Name
Ori
18530
18624
+
12
23832754
23832847
-
75
1.10E-66
95
95
18471
18512
+
12
23832858
23832899
-
34
1.10E-66
95
42
36366
36419
-
12
23991513
23991566
-
50
5.50E-15
98
54
95220
95354
+
12
23996189
23996322
-
114
4.40E-55
96
134
39293
39638
-
12
24562307
24562655
+
243
2.30E-127
92
351
97995
98079
-
12
24647869
24647951
+
73
2.10E-133
96
85
117042
117126
+
12
24647869
24647951
+
73
7.90E-132
96
85
97761
97985
-
12
24647951
24648174
+
192
2.10E-133
96
224
117136
117360
+
12
24647951
24648174
+
192
7.90E-132
96
224
81126
81193
+
12
24649504
24649570
+
59
2.60E-22
97
67
133928
133995
-
12
24649504
24649570
+
59
2.70E-19
97
67
66206
66308
+
12
24650273
24650374
+
90
8.90E-41
97
102
103735
103751
-
12
24765385
24765400
+
16
2.70E-19
100
16
35300
35441
+
12
25441456
25441598
+
55
2.10E-16
84
147
23384
23451
-
12
25986696
25986763
-
40
1.70E-08
90
68
19121
19165
-
12
26193975
26194019
+
37
1.50E-06
96
45
82674
82765
-
12
26378866
26378955
-
68
1.10E-27
93
92
55697
55957
+
12
26378868
26379125
-
177
1.30E-92
92
261
15395
15454
+
12
26617030
26617089
+
44
2.30E-13
93
60
107849
108229
-
12
27395095
27395476
1.20E-110
89
+
Score
207
E-val
%ID
Length
383
193
Table A-2
Mitochondrial DNA homologies in the rice nuclear genome
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
20741
20840
+
1
1986919
1987155
+
100
3.50E-154
100
100
28810
28906
-
1
1987177
1987418
+
50
7.80E-169
87
102
27723
27844
+
1
2521305
2521690
+
118
0
99
122
30532
30660
+
1
2521305
2521690
+
113
0
97
129
27220
27357
-
1
2521704
2521901
+
138
3.90E-93
100
138
22319
22457
+
1
2521704
2521901
+
135
3.50E-154
99
139
27700
27844
-
1
2800795
2801057
+
137
5.10E-66
99
145
30570
30716
-
1
3073702
3073840
+
120
2.60E-69
95
148
35155
35304
-
1
3379496
3379651
+
102
8.00E-78
92
150
27905
28055
+
1
3391533
3391688
+
139
0
98
151
27905
28055
+
1
3698513
3698817
+
135
0
97
151
28718
28884
+
1
4092658
4092947
+
148
0
97
168
9625
9816
+
1
4092658
4092947
+
168
3.90E-102
97
192
26977
27174
-
1
4093050
4093269
+
198
5.30E-129
100
198
40266
40470
+
1
5545437
5545812
+
205
0
100
205
404
609
-
1
6867176
6867383
+
202
1.30E-107
100
206
16637
16844
-
1
6867176
6867383
+
172
9.90E-90
96
208
11076
11293
+
1
6867383
6867743
+
206
5.50E-110
99
218
28924
29143
-
1
6867383
6867743
+
115
7.80E-169
88
223
27609
27844
+
1
7225663
7225978
+
196
0
96
236
26086
26324
+
1
7225663
7225978
+
221
0
98
241
158
399
+
1
7225977
7226086
+
238
1.50E-125
100
242
40215
40470
-
1
7226433
7226562
+
252
3.30E-134
100
256
29370
29668
+
1
7226433
7226562
+
295
0
100
299
4248
4578
-
1
7301156
7301260
+
327
0
100
331
8899
9230
-
1
7301260
7301600
+
332
0
100
332
29205
29541
-
1
7914155
7914630
+
174
7.80E-169
88
338
27196
27546
-
1
7914155
7914630
+
339
3.50E-184
99
351
31166
31567
-
1
8158729
8158898
+
306
4.70E-190
94
402
28153
28583
+
1
8158963
8159199
+
343
0
95
435
28153
28583
+
1
8876134
8876317
+
327
0
94
435
9872
10363
+
1
9878240
9878380
+
465
0
99
493
194
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
1557
2170
+
1
9878240
9878380
+
445
1.90E-247
93
617
28718
29383
+
1
11192007
11192210
+
611
0
98
667
29454
30249
-
1
12566250
12566382
+
763
0
99
799
26588
27611
+
1
12929099
12929494
+
870
0
96
1030
26328
27595
+
1
12929099
12929494
+
1186
0
98
1274
115268
115368
+
1
14119914
14120940
+
100
1.70E-110
100
100
93327
93449
+
1
14119914
14120209
+
114
6.50E-53
98
122
116846
116985
+
1
14120210
14120940
+
135
1.70E-110
99
139
104152
104344
+
1
14120945
14121180
+
168
3.90E-102
97
192
94931
95137
-
1
14120945
14121180
+
202
5.30E-105
100
206
111164
111372
-
1
14121454
14121604
+
172
1.00E-89
96
208
105603
105821
+
1
14121454
14121604
+
206
5.50E-110
99
218
120613
120852
+
1
14121713
14122142
+
221
0
98
241
94685
94927
+
1
14121713
14122142
+
238
3.70E-135
100
242
121115
121411
+
1
14122304
14122471
+
256
4.30E-135
97
296
98775
99106
-
1
14122304
14122471
+
327
0
100
331
103426
103758
-
1
15109868
15110154
+
332
0
100
332
104399
104891
+
1
15792004
15792134
+
465
7.10E-261
99
493
120855
121411
+
1
17381772
17381917
+
536
0
99
556
96084
96698
+
1
17381772
17381917
+
445
1.30E-247
93
617
43216
43316
+
1
18563883
18563995
+
100
3.20E-45
100
100
73168
73269
-
1
18604594
18604697
+
101
7.70E-77
100
101
73158
73272
+
1
18662633
18662874
+
82
1.50E-32
93
114
68319
68436
+
1
18662633
18662874
+
113
5.60E-62
99
117
57803
57936
-
1
18662873
18663002
+
129
2.90E-61
99
133
64258
64414
+
1
18663007
18663226
+
136
1.10E-64
97
156
68275
68449
+
1
18663007
18663226
+
174
3.40E-98
100
174
54330
54507
-
1
18663226
18663592
+
154
2.00E-96
97
178
71172
71360
+
1
18663226
18663592
+
140
3.30E-67
94
188
78009
78228
-
1
18663667
18664044
+
215
0
100
219
71241
71484
-
1
18664084
18664560
+
195
2.90E-98
95
243
71240
71484
-
1
18664561
18664829
+
216
1.40E-110
97
244
65585
65871
-
1
18664561
18664829
+
278
2.00E-188
99
286
74761
75072
-
1
18664830
18664971
+
311
0
100
311
79249
79570
+
1
18665076
18665600
+
273
3.20E-144
96
321
79249
79570
+
1
18665596
18666416
+
259
7.40E-135
95
327
195
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
43430
43796
-
1
18666415
18666577
+
327
9.40E-178
97
367
446952
450449
-
1
18666578
18666773
+
3489
0
100
3497
465054
467566
-
1
18666775
18666945
+
2509
0
100
2513
460275
462146
+
1
18666946
18667096
+
1859
0
100
1871
482345
483474
+
1
18667093
18667224
+
1129
0
100
1129
464072
465033
-
1
18667226
18667500
+
953
0
100
961
461284
462129
+
1
18667245
18667500
+
838
0
100
846
445461
446216
-
1
18667880
18668169
+
755
0
100
755
462867
463437
+
1
18668256
18668386
+
558
3.8e-310
99
570
455403
455879
-
1
18668386
18668596
+
445
1.20E-247
98
477
486488
486910
-
1
18668597
18668730
+
414
9.50E-233
100
422
446376
446788
-
1
18668597
18668730
+
412
0
100
412
486392
486804
-
1
18668732
18668864
+
404
0
100
412
485430
485811
+
1
18668732
18668864
+
345
6.20E-190
98
381
451997
452366
+
1
18668865
18669150
+
361
9.00E-261
99
369
455059
455426
+
1
18669238
18669452
+
359
0
99
367
463725
464064
-
1
18669452
18669615
+
335
0
100
339
466883
467217
-
1
18806417
18806634
+
327
6.90E-274
99
335
462214
462530
-
1
18806417
18806634
+
280
3.10E-149
97
316
463292
463561
+
1
18977321
18977470
+
265
0
100
269
448363
448626
-
1
18977321
18977470
+
131
1.10E-63
87
263
445174
445430
+
1
19442390
19442496
+
256
0
100
256
485463
485709
+
1
19443196
19443309
+
198
7.50E-131
95
246
465954
466174
-
1
21690718
21690905
+
208
3.40E-107
99
220
485446
485660
-
1
22563818
22564141
+
206
5.10E-215
99
214
481549
481752
-
1
22564150
22564395
+
199
0
100
203
451555
451731
-
1
22564150
22564395
+
164
2.90E-79
98
176
451555
451731
-
1
22564397
22564506
+
164
3.30E-80
98
176
464209
464356
+
1
22564397
22564506
+
50
0
83
154
486669
486815
+
1
22564537
22564780
+
114
5.40E-70
95
146
446796
446941
-
1
22566555
22566875
+
145
0
100
145
446224
446367
-
1
22566873
22567252
+
143
0
100
143
445615
445756
+
1
22566873
22567252
+
133
1.20E-64
99
141
478680
478813
+
1
22567283
22567525
+
129
0
99
133
482232
482362
+
1
22794152
22794342
+
114
8.10E-53
97
130
487428
487554
+
1
22794152
22794342
+
102
2.10E-45
95
126
196
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
482971
483091
+
1
23132130
23132496
+
120
9.00E-261
100
120
478216
478334
-
1
23132130
23132496
+
118
3.60E-63
100
118
485703
485811
+
1
24230026
24230245
+
66
7.50E-131
90
110
465504
465611
+
1
24230264
24230364
+
103
6.60E-57
99
107
472432
472537
-
1
24636227
24636515
+
101
4.20E-69
99
105
484882
484986
-
1
24636636
24636927
+
104
6.90E-274
100
104
406833
406939
+
1
24730249
24730480
+
104
2.30E-170
99
106
409281
409388
+
1
26590723
26590847
+
95
2.40E-62
97
107
440892
441018
-
1
27827129
27827742
+
106
0
96
126
435252
435381
-
1
27827129
27827742
+
129
5.70E-60
100
129
410301
410430
+
1
28097561
28097714
+
129
0
100
129
442305
442427
-
1
28361408
28361977
+
81
0
91
129
440107
440237
-
1
28361408
28361977
+
94
0
93
130
406722
406854
+
1
28394549
28394696
+
132
0
100
132
431595
431729
+
1
28394549
28394696
+
130
1.80E-106
99
134
417301
417438
-
1
29712512
29712716
+
137
2.40E-111
100
137
415867
416026
+
1
29712512
29712716
+
155
5.90E-204
99
159
416318
416494
-
1
30061173
30061509
+
176
3.30E-171
100
176
411337
411515
+
1
30061173
30061509
+
178
5.90E-204
100
178
406427
406610
-
1
30061797
30062015
+
159
3.30E-171
97
183
442617
442816
+
1
30061797
30062015
+
183
8.60E-293
98
199
423919
424124
+
1
30062029
30062130
+
166
7.30E-84
95
206
438442
438644
+
1
30062029
30062130
+
109
2.60E-71
88
209
436928
437170
-
1
31910316
31910420
+
238
1.70E-124
100
242
435392
435636
-
1
31910316
31910420
+
236
2.10E-132
99
244
440518
440774
-
1
31910316
31910420
+
206
0
95
258
433625
433915
+
1
31910593
31910710
+
290
1.40E-153
100
290
422565
422922
-
1
31910593
31910710
+
293
4.40E-159
95
361
442217
442603
+
1
31910604
31910710
+
354
8.60E-293
98
386
410848
411235
+
1
33478131
33478839
+
380
0
99
388
412862
413359
-
1
33483563
33483752
+
489
0
100
497
439174
439863
+
1
33485848
33486692
+
689
0
100
689
440028
440879
+
1
33485848
33486692
+
851
0
100
851
441345
442306
-
1
33492335
33493376
+
841
0
97
961
441028
442265
-
1
33493385
33495052
+
1058
0
96
1238
440888
442603
+
1
33495037
33495899
+
1707
0
100
1715
197
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
442617
445171
+
1
33495898
33496586
+
2554
0
100
2554
384417
384524
+
1
33495898
33496586
+
103
1.30E-48
99
107
364231
364343
+
1
33496673
33497602
+
112
0
100
112
395696
395811
+
1
33496752
33497602
+
63
1.30E-63
89
115
399276
399395
-
1
33497612
33499326
+
119
4.40E-70
100
119
400202
400333
+
1
33497612
33499326
+
119
0
98
131
364528
364669
+
1
33499341
33501894
+
133
4.40E-63
99
141
365137
365280
-
1
33499341
33502041
+
143
0
100
143
365709
365854
-
1
33501898
33502153
+
145
0
100
145
383122
383269
+
1
33502042
33502153
+
50
0
83
154
391513
391668
+
1
33509411
33509615
+
155
8.10E-283
100
155
396643
396806
+
1
33509411
33509615
+
159
0
99
163
370468
370644
-
1
33513535
33514333
+
164
1.80E-82
98
176
370468
370644
-
1
33513535
33514333
+
164
9.90E-81
98
176
384867
385087
-
1
33514330
33517826
+
208
9.40E-107
99
220
367276
367539
-
1
33514330
33517826
+
131
6.00E-63
87
263
382205
382474
+
1
33517836
33517980
+
265
0
100
269
381127
381443
-
1
33517836
33517980
+
280
2.20E-149
97
316
385796
386131
-
1
33517989
33518400
+
331
1.60E-223
100
335
382638
382977
-
1
33517989
33518400
+
335
0
100
339
373972
374339
+
1
33518410
33518552
+
359
0
99
367
370910
371279
+
1
33518410
33518552
+
361
8.10E-283
99
369
365289
365701
-
1
33518561
33519315
+
412
0
100
412
374316
374792
-
1
33518561
33519315
+
445
4.70E-249
98
477
381780
382350
+
1
33519316
33519555
+
558
2.1e-310
99
570
395692
396401
+
1
33519316
33519555
+
673
0
99
709
364374
365129
-
1
33519568
33520839
+
755
0
100
755
380197
381042
+
1
33519568
33520123
+
838
0
100
846
382985
383946
-
1
33520124
33520839
+
953
0
100
961
379188
381059
+
1
33523471
33525341
+
1859
0
100
1871
365865
369362
-
1
33523471
33525341
+
3489
0
100
3497
383967
387767
-
1
33525361
33526489
+
3800
0
100
3800
336986
337097
-
1
33525361
33526489
+
99
3.40E-41
97
111
359805
359931
-
1
33528876
33528984
+
106
0
96
126
354165
354294
-
1
33529021
33530615
+
129
1.20E-58
100
129
361218
361340
-
1
33530630
33531296
+
81
0
91
129
198
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
359020
359150
-
1
33531316
33532559
+
94
0
93
130
349773
349904
+
1
33532063
33532559
+
103
3.10E-45
95
131
350508
350642
+
1
33532063
33532559
+
130
1.30E-214
99
134
330051
330187
+
1
33532891
33533041
+
136
1.50E-120
100
136
330045
330187
+
1
33532891
33533041
+
142
3.30E-108
100
142
330027
330187
+
1
33533149
33533578
+
156
3.20E-108
99
160
328604
328775
-
1
33533149
33533578
+
156
3.70E-205
98
172
329900
330091
-
1
33533740
33534406
+
92
1.10E-71
87
196
324516
324714
-
1
33533740
33534406
+
194
1.50E-123
99
198
361530
361729
+
1
33534632
33534741
+
183
6.20E-293
98
199
342832
343037
+
1
33535874
33536047
+
166
9.20E-83
95
206
357355
357557
+
1
33539813
33539940
+
109
1.30E-67
88
209
355841
356083
-
1
33539813
33539940
+
238
1.10E-125
100
242
354305
354549
-
1
33539946
33540901
+
236
3.70E-205
99
244
359431
359687
-
1
33539946
33540901
+
206
0
95
258
352538
352828
+
1
33539982
33541213
+
290
1.40E-153
100
290
332891
333181
+
1
33539982
33541213
+
274
1.30E-214
99
290
341478
341835
-
1
33541214
33541339
+
293
4.40E-159
95
361
361130
361516
+
1
33541214
33541339
+
354
6.20E-293
98
386
358087
358776
+
1
33541402
33541658
+
689
0
100
689
358862
359792
+
1
33541402
33541658
+
930
0
100
930
360258
361219
-
1
33541869
33541998
+
841
0
97
961
359941
361178
-
1
33541869
33541998
+
1058
0
96
1238
359801
361516
+
1
33546186
33546307
+
1707
0
100
1715
361530
364231
+
1
33546186
33546307
+
2697
0
100
2701
288949
290617
-
1
33552764
33552892
+
1640
0
100
1668
290625
291667
-
1
33552764
33552892
+
1026
0
100
1042
288120
288990
-
1
33562091
33565890
+
806
0
98
870
303325
304155
-
1
33563378
33565890
+
794
0
99
830
300809
301630
+
1
33565912
33566872
+
817
0
100
821
300743
301323
-
1
33565912
33566872
+
573
0
100
581
303577
304155
-
1
33566881
33567219
+
558
0
99
578
288390
288867
+
1
33566881
33567219
+
477
0
100
477
316628
317091
+
1
33567524
33567670
+
400
2.10E-237
97
464
313788
314175
+
1
33567524
33567670
+
364
8.20E-283
98
388
300835
301145
-
1
33691198
33691342
+
298
1.20E-169
99
310
199
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
290807
291094
-
1
33691198
33691342
+
271
6.60E-141
99
287
292128
292381
-
1
34349474
34349614
+
249
1.10E-140
100
253
303325
303577
-
1
34349615
34349714
+
236
2.50E-135
98
252
290267
290504
+
1
34349615
34349714
+
142
4.80E-67
90
238
310452
310684
-
1
34349828
34350033
+
224
0
99
232
310452
310684
-
1
34349828
34350033
+
224
0
99
232
286277
286493
-
1
34350033
34350170
+
189
2.50E-97
96
221
285397
285596
-
1
34350033
34350170
+
199
4.60E-112
100
199
284946
285105
+
1
34350732
34350856
+
155
8.20E-283
99
159
286412
286569
+
1
34350960
34351097
+
137
7.30E-66
97
157
319490
319644
+
1
34350960
34351097
+
150
4.90E-73
99
154
297516
297655
+
1
34351287
34351387
+
119
4.00E-70
96
139
287277
287414
+
1
34351854
34351951
+
129
2.00E-143
99
137
244747
245230
+
1
34351854
34351951
+
396
4.60E-218
95
484
246083
246260
-
1
34352084
34352190
+
94
0
88
178
246245
246450
+
1
34352084
34352190
+
177
1.00E-92
97
205
247260
247370
-
1
34352704
34352809
+
47
0
86
111
248679
248946
+
1
34353490
34353607
+
223
1.80E-117
96
267
249612
249730
+
1
34353490
34353607
+
114
6.80E-52
99
118
250142
250243
-
1
34353663
34353793
+
49
6.80E-52
87
101
250261
250481
-
1
34354612
34354718
+
80
6.80E-52
84
224
251585
251709
+
1
34354612
34354718
+
120
1.2e-312
99
124
257795
257932
-
1
34354891
34355132
+
133
1.70E-202
99
137
258002
258144
-
1
34354891
34355132
+
138
2.40E-139
99
142
261774
262081
+
1
34355396
34355587
+
194
2.70E-100
91
310
263182
263303
-
1
38361430
38361758
+
121
1.70E-202
100
121
263183
263299
-
1
39015432
39015609
+
112
2.30E-128
99
116
266342
266452
-
1
39090013
39090116
+
94
3.20E-42
96
110
266342
266452
-
1
39090017
39090116
+
94
7.10E-39
96
110
267688
267801
-
1
39090118
39090230
+
113
1.70E-202
100
113
269116
269641
+
1
39090294
39090429
+
501
2.50E-282
99
525
271562
271851
+
1
39090467
39090587
+
257
7.90E-159
97
289
274117
274351
+
1
39090588
39090922
+
234
5.90E-225
100
234
274247
274348
-
1
39090588
39090922
+
81
8.00E-114
95
101
277790
277897
-
1
39090946
39091123
+
107
1.40E-50
100
107
278355
278473
+
1
39090946
39091123
+
106
2.70E-48
97
118
200
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
279386
279515
+
1
39090946
39091123
+
129
5.50E-286
100
129
279933
280320
+
1
39091124
39091249
+
380
1.2e-312
99
388
280422
280600
+
1
39091251
39091582
+
178
6.70E-133
100
178
281947
282444
-
1
39091251
39091582
+
489
0
100
497
202495
202823
-
1
39091870
39092067
+
148
4.90E-73
95
184
202985
203885
-
1
39092067
39092203
+
262
4.90E-160
100
266
203425
204789
+
1
39092207
39092405
+
245
4.10E-138
96
293
205600
209065
-
1
39092230
39092405
+
208
2.50E-187
99
216
205814
209512
+
1
39092407
39092756
+
227
0
99
235
206294
210342
+
1
39092927
39093366
+
101
2.50E-96
99
105
209664
217147
+
1
39093365
39093483
+
111
3.30E-111
91
171
209812
217512
+
1
39093615
39093867
+
122
3.30E-111
88
242
211015
219809
+
1
39093867
39094358
+
126
1.00E-297
99
130
211908
221801
+
1
39093867
39094358
+
304
0
98
336
212192
222457
+
1
39094362
39094503
+
404
0
99
424
214062
225874
+
1
39094545
39094660
+
101
0
100
101
214985
227853
+
1
39094667
39094976
+
234
0
100
234
215115
227980
-
1
39095610
39095769
+
81
3.50E-89
95
101
218658
235072
-
1
39095837
39095995
+
107
1.20E-85
100
107
219223
236213
+
1
39095837
39095995
+
106
2.50E-96
97
118
220254
238286
+
1
39096091
39096191
+
129
0
100
129
220801
239638
+
1
39096192
39096772
+
380
0
99
388
221290
240407
+
1
39096775
39097197
+
178
1.40E-133
100
178
222815
244523
-
1
39097197
39097379
+
1228
0
100
1244
224078
246472
-
1
39097377
39097590
+
667
0
100
667
224759
248762
-
1
39097377
39097590
+
1595
0
100
1595
227447
252694
-
1
39097590
39097721
+
151
2.50E-187
100
151
228777
255310
+
1
39097816
39098227
+
87
5.50E-35
95
107
229776
257866
-
1
39097816
39098227
+
653
0
100
665
235431
268748
-
1
39098232
39098562
+
233
0
100
237
239652
277065
+
1
39098232
39098562
+
100
3.70E-170
97
112
239776
277473
+
1
39098563
39098760
+
232
3.70E-170
96
272
239933
277624
-
1
39098563
39098760
+
105
0
99
109
241431
280889
+
1
39098900
39099036
+
370
1.00E-297
99
378
198859
198963
-
1
39099178
39099421
+
92
2.50E-193
97
104
171018
171123
-
1
39099178
39099421
+
85
2.40E-238
95
105
201
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
195131
195241
-
1
39099411
39099580
+
94
2.40E-238
96
110
162602
162710
+
1
39099580
39099967
+
66
3.30E-128
90
110
191362
191477
-
1
39099967
39100201
+
115
0
100
115
185227
185352
-
1
39100375
39100689
+
125
3.10E-169
100
125
175947
176072
+
1
39100773
39100946
+
121
2.40E-59
99
125
192700
192826
+
1
39100947
39101315
+
122
3.00E-98
99
126
164327
164453
+
1
39100947
39101315
+
102
1.90E-46
95
126
182686
182817
-
1
39101580
39101878
+
131
3.10E-169
100
131
174790
174922
-
1
39101580
39101878
+
128
2.50E-193
99
132
172685
172824
+
1
39101913
39102248
+
132
3.10E-118
99
140
184331
184472
+
1
39102250
39102378
+
141
3.00E-181
100
141
163568
163714
+
1
39102250
39102378
+
114
6.00E-72
95
146
170777
170941
+
1
39102250
39102378
+
156
1.50E-73
99
164
183672
183843
-
1
39102508
39102773
+
167
2.50E-193
99
171
195954
196146
+
1
39102774
39102890
+
172
3.00E-181
97
192
180946
181142
+
1
39102891
39102990
+
192
1.80E-136
99
196
195079
195291
-
1
39102891
39102990
+
192
2.80E-141
98
212
162345
162559
-
1
39103046
39103264
+
206
6.10E-117
99
214
188672
188909
-
1
39103376
39103530
+
165
4.20E-177
92
237
188383
188625
-
1
39103531
39103832
+
151
4.20E-177
91
243
162362
162608
+
1
39103832
39103971
+
198
3.30E-128
95
246
184463
184765
-
1
39104059
39104369
+
302
0
100
302
168950
169265
-
1
39104370
39104606
+
315
0
100
315
179577
179906
-
1
39105278
39105401
+
297
3.10E-159
98
329
170664
171004
-
1
39105400
39105604
+
283
2.40E-238
96
343
188616
188966
+
1
39105400
39105673
+
342
6.40E-228
99
350
162329
162710
+
1
39105671
39105807
+
345
6.50E-188
98
381
188219
188594
-
1
39105851
39106053
+
169
3.30E-84
86
385
163291
163703
-
1
39105851
39106053
+
404
1.20E-234
100
412
163387
163809
-
1
39106053
39106440
+
414
0
100
422
179116
179556
+
1
39106053
39106440
+
436
5.90E-306
100
440
176315
177156
-
1
39106053
39106440
+
841
0
100
841
161781
161880
-
1
39106435
39106549
+
100
1.20E-169
100
100
137743
137842
+
1
39106653
39107073
+
100
9.30E-270
100
100
123337
123433
-
1
39106653
39107073
+
50
6.00E-170
87
102
149331
149435
-
1
39107139
39107803
+
101
1.30E-43
99
105
202
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
155115
155232
-
1
39107804
39108037
+
118
8.40E-56
100
118
159870
159989
+
1
39107804
39108037
+
120
0
100
120
122250
122371
+
1
39108039
39108158
+
118
0
99
122
125059
125187
+
1
39108039
39108158
+
113
0
97
129
159131
159260
+
1
39108159
39108280
+
114
6.40E-53
97
130
155579
155711
+
1
39108279
39108396
+
129
6.60E-59
99
133
121747
121884
-
1
39177728
39177839
+
138
1.80E-69
100
138
122227
122371
-
1
39177853
39178123
+
137
4.00E-67
99
145
125097
125243
-
1
39331077
39331559
+
120
3.20E-70
95
148
129682
129831
-
1
39565015
39565143
+
102
3.80E-80
92
150
122432
122582
+
1
39565015
39565143
+
139
0
98
151
122432
122582
+
1
40333073
40333330
+
135
0
97
151
123245
123411
+
1
40333073
40333330
+
148
0
97
168
121504
121701
-
1
41274989
41275113
+
198
1.20E-169
100
198
158448
158650
-
1
41274989
41275113
+
199
9.00E-154
100
203
123451
123670
-
1
41434732
41434963
+
115
6.00E-170
88
223
122136
122371
+
1
41434963
41435068
+
196
0
96
236
134793
135066
+
1
41435069
41435244
+
274
0
100
274
134742
135016
-
1
41435069
41435244
+
271
3.10E-145
100
275
123897
124195
+
1
41435245
41435820
+
295
0
100
299
123732
124068
-
1
41435821
41436072
+
174
6.00E-170
88
338
121723
122073
-
1
41465705
41465936
+
339
5.80E-186
99
351
137957
138323
-
1
41465936
41466041
+
331
5.80E-202
98
367
125693
126094
-
1
41466042
41466217
+
306
4.90E-188
94
402
122680
123110
+
1
41466042
41466217
+
343
0
95
435
122680
123110
+
1
41466218
41467045
+
327
0
94
435
123245
123910
+
1
41474474
41474936
+
611
0
98
667
121411
122122
+
1
41487041
41487151
+
650
0
98
718
121411
122138
+
1
41701503
41701853
+
614
0
96
734
123981
124776
-
1
41701503
41701853
+
763
0
99
799
159244
160372
+
1
42092125
42092965
+
1129
0
100
1129
26328
26577
-
2
808124
808242
+
194
2.20E-119
94
250
23988
24252
+
2
808124
808242
+
265
1.50E-140
100
265
32536
32814
-
2
814498
814605
+
255
3.50E-135
98
279
106004
106116
+
2
815241
815386
+
104
1.70E-47
98
112
203
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
115659
115788
-
2
2392407
2393045
+
102
5.10E-48
95
130
120855
121105
-
2
4905050
4905258
+
194
6.00E-119
94
250
80978
81231
-
2
5483028
5483145
+
245
3.50E-131
99
253
118515
118780
+
2
6171547
6171684
+
265
1.60E-140
100
265
42787
42889
+
2
6171547
6171684
+
87
3.60E-37
96
103
53454
53588
-
2
6172085
6172299
+
73
1.90E-46
88
137
79710
79869
-
2
6697262
6697439
+
155
1.10E-124
99
159
41909
42076
+
2
6697262
6697439
+
81
2.80E-37
87
173
62020
62388
-
2
6997522
6997685
+
364
2.60E-201
100
368
453008
453308
+
2
11195546
11196225
+
209
4.90E-108
92
301
462941
463138
-
2
12183565
12183687
+
182
1.40E-88
98
198
458280
458455
+
2
12183565
12183687
+
65
2.20E-70
84
185
463083
463261
+
2
12183687
12183874
+
150
9.40E-75
96
178
456384
456545
-
2
12183950
12184195
+
114
1.20E-51
93
162
456384
456545
-
2
12184312
12184424
+
101
7.20E-42
91
161
464210
464356
+
2
12184312
12184424
+
37
9.40E-37
81
153
487458
487596
+
2
12184622
12184729
+
122
1.80E-57
97
138
486298
486414
-
2
12184721
12184823
+
104
4.70E-44
97
116
457957
458068
+
2
12184721
12184823
+
60
2.20E-70
88
112
463485
463594
+
2
13403353
13403456
+
44
9.40E-37
85
112
446258
446367
-
2
14191648
14191766
+
109
8.10E-50
100
109
478876
478976
+
2
14191648
14191766
+
96
3.60E-42
99
100
428681
428794
+
2
14202863
14203706
+
113
1.60E-52
100
113
406320
406428
+
2
14202863
14203706
+
71
3.10E-203
90
115
434577
434695
-
2
14210381
14210659
+
90
8.50E-75
94
118
414344
414463
-
2
14210659
14211484
+
76
3.70E-141
91
120
414344
414463
+
2
14211494
14211764
+
68
2.50E-72
89
120
412377
412499
+
2
14211826
14212161
+
118
2.30E-55
99
122
440670
440793
+
2
14214325
14214498
+
115
9.20E-56
98
123
440655
440774
-
2
14215629
14215738
+
59
2.20E-70
87
123
432504
432634
+
2
14216292
14217002
+
130
5.40E-63
100
130
441028
441163
-
2
14216987
14218654
+
53
2.20E-70
85
137
434662
434860
+
2
14218663
14220715
+
174
6.40E-91
97
198
409563
409817
-
2
14220777
14221047
+
206
1.60E-107
95
254
406434
406795
+
2
14221057
14222686
+
263
3.10E-203
93
363
441301
442149
+
2
14222319
14222686
+
732
0
97
848
204
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
396526
396632
+
2
14223048
14223206
+
102
1.40E-46
99
106
387663
387771
-
2
14223514
14223818
+
108
1.40E-51
100
108
365171
365280
-
2
14690179
14690297
+
109
3.50E-52
100
109
376870
376981
+
2
14690389
14690737
+
60
9.10E-71
88
112
375297
375458
-
2
14690389
14690737
+
101
5.60E-43
91
161
375297
375458
-
2
14889955
14890203
+
114
8.80E-52
93
162
381996
382174
+
2
14889955
14890203
+
150
2.90E-74
96
178
377193
377368
+
2
15425167
15425466
+
65
9.10E-71
84
185
381854
382051
-
2
15425167
15425466
+
182
6.60E-90
98
198
387660
387907
+
2
16001851
16001980
+
239
3.10E-128
99
247
371921
372221
+
2
16001851
16001980
+
209
3.00E-108
92
301
390599
390901
-
2
16001979
16002154
+
241
5.20E-130
95
305
403054
403767
+
2
17521788
17521909
+
685
0
99
713
347594
347707
+
2
17521788
17521909
+
113
3.80E-51
100
113
356683
356797
+
2
17521788
17521909
+
110
1.70E-50
99
114
359583
359706
+
2
17532060
17532168
+
115
1.00E-53
98
123
359568
359687
-
2
17532060
17532168
+
59
2.20E-70
87
123
351417
351547
+
2
17532362
17532543
+
130
2.10E-62
100
130
359941
360076
-
2
17532362
17532543
+
53
2.20E-70
85
137
328034
328210
+
2
17638993
17639123
+
156
8.20E-78
97
176
353575
353773
+
2
17996550
17996678
+
174
6.40E-91
97
198
360214
361062
+
2
18019756
18019855
+
732
0
97
848
290625
292679
+
2
18019756
18019855
+
1994
0
99
2054
288949
290617
+
2
18019979
18020090
+
1644
0
100
1668
292957
294587
+
2
18561742
18561854
+
1586
0
99
1630
292957
293783
-
2
18695390
18695562
+
814
0
100
826
288272
288990
+
2
18695390
18695562
+
662
0
98
718
299906
300554
+
2
19360550
19360746
+
480
4.90E-278
94
648
292343
292679
-
2
19360550
19360746
+
328
0
99
336
290867
291146
-
2
19360747
19360862
+
259
2.80E-138
98
279
292677
292948
-
2
19360747
19360862
+
267
0
100
271
292677
292948
+
2
19360923
19361079
+
263
0
99
271
308245
308410
+
2
19360923
19361079
+
114
1.50E-52
92
166
283423
283542
-
2
19361316
19361568
+
76
4.50E-83
91
120
283423
283542
+
2
19361568
19361673
+
68
1.30E-61
89
120
246083
246260
+
2
19552733
19552979
+
90
1.30E-84
88
178
205
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
247260
247370
+
2
20055594
20055714
+
47
1.30E-84
86
111
256132
256263
-
2
20801010
20801263
+
123
7.10E-56
98
131
256718
256929
-
2
20801010
20801263
+
199
6.10E-102
99
211
261096
261341
+
2
20801010
20801263
+
226
1.30E-148
98
246
266488
267170
+
2
20982992
20983123
+
535
9.80E-304
95
683
274242
274595
-
2
21793103
21793217
+
269
8.60E-145
94
353
276093
276250
-
2
21793237
21793597
+
149
1.80E-73
99
157
278648
278902
-
2
22083891
22084087
+
206
5.50E-110
95
254
280767
280882
-
2
22083891
22084087
+
115
1.50E-53
100
115
281462
281584
+
2
22267960
22268170
+
118
1.50E-57
99
122
204944
207679
-
2
22268497
22269209
+
100
5.50E-44
92
148
210568
218908
-
2
23376854
23377014
+
107
2.30E-45
97
123
210656
219065
-
2
23376854
23377014
+
84
6.90E-34
95
104
215110
228222
-
2
23395972
23396132
+
269
6.70E-144
94
353
216961
231728
-
2
23395972
23396132
+
149
1.40E-76
99
157
219516
236935
-
2
24838531
24838646
+
203
9.60E-106
95
255
221635
241034
-
2
24838648
24838757
+
115
3.90E-54
100
115
222330
242431
+
2
25578311
25578433
+
118
4.90E-55
99
122
225835
249543
-
2
26390036
26390143
+
194
7.70E-101
96
226
229649
257167
-
2
27618357
27618634
+
180
1.30E-90
95
220
241098
280033
+
2
27618357
27618634
+
153
2.10E-77
95
189
200622
200729
+
2
28116937
28117084
+
96
7.70E-41
97
108
200809
200919
-
2
29605666
29605890
+
102
1.00E-64
98
110
163197
163313
-
2
31969066
31969194
+
104
2.40E-49
97
116
197418
197537
+
2
32109099
32109207
+
103
2.50E-45
97
119
199433
199553
+
2
32109099
32109207
+
80
2.80E-31
92
120
191397
191526
+
2
33180076
33180188
+
109
3.60E-48
96
129
164357
164495
+
2
33776806
33776920
+
122
6.20E-60
97
138
177993
178201
+
2
33776806
33776920
+
186
2.80E-96
97
210
155775
155874
+
2
35404082
35404346
+
96
2.60E-42
99
100
137314
137415
+
2
35404082
35404346
+
87
6.80E-55
96
103
126209
126320
-
2
35784625
35784759
+
109
6.40E-50
99
113
125713
125837
-
2
35784625
35784759
+
77
2.20E-32
90
125
136436
136602
+
2
35784945
35785065
+
81
8.20E-37
87
173
127063
127341
-
2
35784945
35785065
+
255
3.70E-137
98
279
206
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
2869
2974
+
3
1739035
1739139
-
98
1.60E-42
98
106
28155
28309
+
3
2286721
2286963
-
139
0
97
155
32257
32416
-
3
2286721
2286963
-
109
6.10E-62
92
161
29734
29898
-
3
3636687
3636800
-
98
4.20E-64
90
166
35109
35276
+
3
3789741
3789849
+
160
6.00E-82
99
168
21060
21232
+
3
4991113
4991351
+
165
1.50E-83
99
173
34157
34331
-
3
4991444
4991693
+
171
2.70E-85
99
175
9468
9645
-
3
4991902
4992149
+
154
1.90E-75
97
178
30796
30971
-
3
4991902
4992149
+
91
3.80E-84
88
179
5849
6030
+
3
4993639
4993921
+
159
3.30E-182
97
183
30571
30770
-
3
4993639
4993921
+
95
3.80E-84
87
203
32190
32393
-
3
4993928
4994031
+
200
2.40E-102
100
204
14427
14643
+
3
4993928
4994031
+
205
5.50E-108
99
217
5623
5851
+
3
5169428
5169544
-
193
3.30E-182
96
229
27609
27844
-
3
5340992
5341165
+
216
0
98
236
25585
25838
-
3
5341168
5341272
+
185
0
93
261
29637
29918
-
3
5341273
5341377
+
255
4.00E-147
98
283
31136
31524
-
3
5341378
5342360
+
373
6.20E-206
99
389
5357
5753
+
3
5341378
5342360
+
381
2.10E-304
99
397
16693
17167
+
3
6657135
6657289
+
471
0
100
475
25834
26324
-
3
6953428
6953749
+
443
0
97
495
26328
27611
-
3
7561828
7562216
+
1206
0
98
1290
108318
108421
-
3
7561828
7562216
+
95
9.70E-42
98
103
97396
97502
+
3
10119489
10119651
+
98
5.30E-42
98
106
93349
93463
+
3
10119489
10119651
+
70
1.40E-36
90
114
82804
82944
-
3
10119720
10119830
+
140
2.60E-138
100
140
88891
89052
+
3
10119980
10120102
+
125
1.80E-59
94
161
115587
115760
+
3
10885002
10885153
-
165
1.00E-84
99
173
103995
104173
-
3
10885148
10885250
-
154
1.90E-75
97
178
100376
100558
+
3
10885251
10885744
-
159
3.00E-183
97
183
108954
109171
+
3
10885745
10886036
-
205
3.30E-106
99
217
100150
100379
+
3
10886038
10886204
-
193
3.00E-183
96
229
120112
120366
-
3
10886263
10888445
-
185
0
93
261
83749
84041
-
3
10887527
10887976
-
284
1.90E-152
99
292
88264
88583
-
3
11653139
11653285
+
319
0
100
319
99884
100281
+
3
13628482
13628610
+
381
2.50E-209
99
397
207
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
111220
111695
+
3
13628482
13628610
+
471
1.10E-262
100
475
120361
120852
-
3
13628611
13629049
+
443
0
97
495
120855
121411
-
3
13628611
13629049
+
536
0
99
556
55379
55484
+
3
13629046
13629348
+
105
2.30E-185
100
105
60973
61078
+
3
13629046
13629348
+
101
2.30E-185
99
105
77566
77673
+
3
13629445
13629588
+
64
3.70E-140
90
108
52224
52334
+
3
13629589
13629756
+
110
0
100
110
52375
52497
+
3
13629589
13629756
+
122
0
100
122
63740
63872
-
3
13629754
13630082
+
99
8.30E-43
93
135
69084
69241
+
3
13630236
13630513
+
157
2.20E-78
100
157
55379
55546
+
3
13630514
13630988
+
163
2.10E-101
99
167
55214
55388
+
3
13630514
13630988
+
170
2.30E-185
99
174
73711
73891
-
3
13631083
13631213
+
118
2.60E-53
91
182
70951
71143
-
3
13631213
13631609
+
153
1.00E-76
95
193
62304
62502
+
3
13631213
13631609
+
167
3.00E-93
96
199
66596
66812
-
3
13631607
13631921
+
127
1.90E-62
90
219
70660
70938
+
3
13632241
13632751
+
258
5.70E-141
98
278
48148
48477
-
3
13632241
13632751
+
309
1.40E-166
98
329
62439
62842
+
3
13632850
13633180
+
399
0
100
403
77152
77556
+
3
13632850
13633180
+
211
3.70E-140
88
407
53540
53985
+
3
13633256
13633459
+
445
0
100
445
61473
63656
+
3
13633256
13633459
+
2091
0
99
2183
459451
459959
+
3
13633457
13633648
+
487
7.40E-274
99
511
448354
448793
-
3
13633457
13633648
+
427
6.10E-246
99
439
447883
448313
+
3
13633747
13634068
+
354
0
96
430
448330
448759
+
3
13634789
13634943
+
306
0
93
430
454938
455267
-
3
13634789
13634943
+
241
3.20E-126
93
333
475159
475429
+
3
13634947
13635073
+
102
5.80E-58
84
282
464481
464736
+
3
13635282
13635387
+
140
3.70E-68
89
256
455085
455333
+
3
13635282
13635387
+
244
1.40E-132
100
248
447140
447359
-
3
13635442
13635597
+
140
1.70E-69
91
220
472392
472604
-
3
13635878
13636085
+
208
1.10E-107
100
212
471287
471478
+
3
13636577
13636751
+
191
3.70E-98
100
191
462763
462926
-
3
13636577
13636751
+
159
2.10E-79
99
163
463749
463906
-
3
13636750
13636889
+
53
3.70E-89
83
161
464209
464356
-
3
13636984
13637185
+
50
3.70E-89
83
154
208
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
464209
464356
-
3
13637208
13637333
+
50
3.70E-89
83
154
465868
466011
+
3
13637442
13637640
+
115
1.70E-53
95
143
486201
486318
+
3
13698334
13698457
+
97
9.30E-39
96
117
463485
463594
-
3
14857596
14857722
+
48
3.70E-89
86
112
475363
475473
+
3
15310314
15310651
-
67
1.10E-24
90
111
475363
475473
-
3
16388086
16388268
+
59
2.90E-25
88
111
458953
459061
+
3
16388742
16388936
+
104
3.70E-49
99
108
461439
461543
-
3
16389372
16389597
+
96
1.10E-42
98
104
421524
421629
+
3
17488193
17488352
+
89
3.90E-39
96
105
407609
407717
+
3
17488193
17488352
+
94
6.60E-72
96
110
438724
438833
+
3
17598579
17598744
-
90
1.20E-66
95
110
407161
407276
+
3
17598579
17598744
-
115
1.20E-54
100
115
412749
412864
+
3
17776872
17777200
-
111
0
99
115
440892
441015
+
3
17776872
17777200
-
77
6.50E-105
90
125
425955
426085
-
3
18108764
18108912
-
126
8.40E-256
99
130
414647
414792
+
3
18108906
18109067
-
133
0
98
145
440594
440774
+
3
18359419
18359716
+
139
6.50E-105
94
183
417756
417941
+
3
18565302
18565423
-
185
1.30E-95
100
185
433937
434129
-
3
18565302
18565423
-
176
7.70E-88
98
192
407127
407330
+
3
18565485
18565666
-
180
0
97
204
404814
405022
+
3
18565485
18565666
-
194
2.50E-100
98
208
412865
413099
+
3
21177471
21177571
-
183
0
94
235
404939
405174
-
3
21389688
21389884
+
197
7.30E-101
95
239
434057
434300
+
3
22049746
22049863
-
243
1.90E-129
100
243
411073
411324
+
3
22430701
22430860
-
224
0
97
252
415236
415539
-
3
23617557
23617902
-
291
8.40E-256
99
303
409616
409919
-
3
23617557
23617902
-
291
1.20E-156
99
303
407297
407617
+
3
23617917
23618061
-
182
3.00E-91
89
326
431676
432007
+
3
23617917
23618061
-
327
6.00E-255
100
331
414802
415149
+
3
23618061
23619133
-
307
0
97
347
441735
442138
+
3
23618061
23618607
-
240
1.00E-127
90
404
413101
413672
+
3
23618611
23619133
-
507
0
97
571
406405
407134
+
3
23619131
23619701
-
625
0
96
731
413687
414762
+
3
23619131
23619701
-
951
0
97
1075
411337
412738
+
3
23619444
23619701
-
1301
0
98
1401
377866
377974
+
3
23619712
23619945
-
104
3.30E-49
99
108
209
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
382398
382507
-
3
23619712
23619945
-
48
1.00E-89
86
112
400794
400912
-
3
23619712
23619945
-
102
7.10E-46
97
118
384781
384924
+
3
23619956
23620070
-
115
1.40E-53
95
143
404224
404368
+
3
23619956
23620070
-
140
2.60E-68
99
144
383122
383269
-
3
23619956
23620070
-
50
1.00E-89
83
154
383122
383269
-
3
23620101
23621497
-
50
1.00E-89
83
154
382662
382819
-
3
23620101
23621497
-
53
1.00E-89
83
161
381676
381839
-
3
23620101
23621497
-
159
2.70E-80
99
163
401114
401320
-
3
23620128
23620305
-
202
2.50E-102
100
206
366053
366272
-
3
23620128
23620305
-
140
1.90E-65
91
220
373998
374246
+
3
23620219
23620355
-
244
5.00E-130
100
248
383394
383649
+
3
23621511
23621762
-
140
2.90E-68
89
256
373851
374180
-
3
23621511
23621762
-
241
3.30E-127
93
333
366796
367226
+
3
23621511
23621762
-
354
0
96
430
367243
367672
+
3
23687923
23688031
-
306
0
93
430
367267
367706
-
3
24150698
24150847
-
427
7.00E-245
99
439
378364
378872
+
3
24487446
24487841
-
487
2.00E-277
99
511
340437
340542
+
3
24487446
24487841
-
89
3.50E-163
96
105
357637
357746
+
3
24709820
24710003
+
90
1.20E-67
95
110
359805
359928
+
3
25689520
25689662
-
77
6.40E-105
90
125
331726
331853
-
3
25689520
25689662
-
119
1.90E-155
98
127
344868
344998
-
3
25691867
25692078
-
126
1.90E-155
99
130
359020
359150
+
3
25691867
25692078
-
82
8.20E-41
91
130
332113
332260
+
3
25691867
25692078
-
139
1.10E-67
99
147
339718
339874
-
3
25692084
25692386
-
120
2.30E-54
94
156
331834
332015
-
3
25692084
25692386
-
173
1.30E-86
99
181
359507
359687
+
3
25692084
25692386
-
139
6.40E-105
94
183
329900
330085
-
3
25758184
25758365
-
86
9.60E-51
86
190
352850
353042
-
3
26475857
26476285
+
176
2.20E-149
98
192
352970
353213
+
3
26475857
26476285
+
243
1.90E-129
100
243
335244
335496
+
3
26476292
26476720
+
232
3.50E-163
98
252
350589
350920
+
3
26476292
26476720
+
327
2.30E-254
100
331
324601
324969
+
3
26560795
26561158
-
285
2.10E-154
94
369
360648
361051
+
3
26698098
26698310
+
240
7.70E-126
90
404
283294
283841
+
3
26698098
26698310
+
483
0
97
547
314254
314748
+
3
26848848
26849019
+
478
3.40E-269
99
494
210
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
294215
294665
-
3
26848848
26849019
+
434
7.50E-241
99
450
283881
284228
+
3
27041648
27041864
-
307
0
97
347
284315
284618
-
3
27041648
27041864
-
291
6.10E-158
99
303
311960
312191
-
3
27257790
27257981
-
171
3.90E-89
94
231
293137
293336
-
3
27565835
27566563
+
195
6.40E-101
100
199
286852
287038
+
3
27566566
27566766
+
186
1.30E-95
100
186
299985
300155
+
3
27802706
27802846
-
108
3.90E-57
91
172
291953
292115
-
3
28350811
28351012
-
154
1.90E-75
99
162
322785
322937
-
3
28350811
28351012
-
144
2.50E-71
99
152
316460
316609
+
3
28351034
28351211
-
141
6.70E-69
99
149
283726
283871
+
3
28351034
28351211
-
133
1.40E-236
98
145
247616
247931
+
3
28575795
28575960
-
303
0
99
315
248007
248331
+
3
28575961
28576221
-
222
3.00E-176
92
326
248341
248484
+
3
28575961
28576221
-
117
3.00E-176
95
145
250142
250480
-
3
28656415
28656571
-
159
7.80E-79
87
343
258080
258402
+
3
28656765
28656874
-
318
0
100
322
258703
258905
+
3
28657092
28657199
+
186
0
98
202
269019
269156
+
3
28667221
28667623
+
133
0
99
137
271116
271437
-
3
28667623
28667729
+
297
2.00E-159
98
321
273498
273654
-
3
28667735
28667950
+
140
1.90E-86
97
156
274947
275209
-
3
28668137
28668267
+
242
3.10E-129
98
262
276499
276628
-
3
28668268
28668473
+
121
1.20E-55
98
129
277183
278162
-
3
28827464
28827578
-
913
0
98
985
277427
277569
-
3
28828403
28828544
-
138
2.40E-65
99
142
278701
279004
-
3
28828403
28828544
-
291
4.50E-156
99
303
280158
280409
+
3
29589480
29589645
-
224
0
97
252
280422
281823
+
3
30600192
30600512
-
1301
0
98
1401
281834
281949
+
3
31097649
31097924
-
111
0
99
115
281950
282184
+
3
31097649
31097924
-
183
0
94
235
282186
282757
+
3
31137359
31137468
-
507
0
97
571
282772
283297
+
3
31137359
31137468
-
469
0
97
525
205569
208913
-
3
31141479
31141587
-
122
7.00E-98
99
126
206227
210315
+
3
31141479
31141587
-
208
4.20E-108
100
212
207353
212531
-
3
31293106
31293222
-
176
4.10E-92
100
176
208298
214411
+
3
31293106
31293222
-
158
4.30E-77
99
166
208611
214995
-
3
31293289
31293392
-
108
2.90E-48
97
124
211
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
209603
217093
+
3
31746266
31746410
-
238
1.80E-126
100
238
209856
217492
+
3
31746411
31746731
-
127
4.20E-104
99
131
215815
229541
-
3
31750559
31751753
-
242
1.10E-124
98
262
217367
232512
-
3
31751754
31751991
-
121
1.50E-56
98
129
218051
234730
-
3
31752249
31752651
-
913
0
98
985
218295
234381
-
3
31754650
31754757
-
138
1.10E-67
99
142
219569
237090
-
3
31754650
31754757
-
287
2.30E-166
99
303
221026
239952
+
3
31754916
31755072
-
224
0
97
252
221134
240017
+
3
31754916
31755072
-
81
4.80E-33
95
101
221290
241630
+
3
31755392
31755538
-
1301
0
98
1401
222702
243168
+
3
31755392
31755538
-
111
0
99
115
222818
243519
+
3
31756524
31756670
-
183
0
94
235
223054
244015
+
3
31756524
31756670
-
222
0
97
258
229054
255907
+
3
31758821
31758942
-
150
1.70E-73
100
150
230079
257938
+
3
31758984
31759093
-
131
1.20E-60
100
131
171303
171407
+
3
31759101
31759419
-
65
4.70E-24
90
105
163202
163311
+
3
31759414
31759858
-
59
4.00E-21
88
111
173472
173580
+
3
31760100
31760359
-
48
5.60E-21
86
112
163100
163217
+
3
31760100
31760359
-
97
3.80E-44
96
117
194252
194375
+
3
31760367
31760860
-
111
3.30E-51
98
123
194089
194255
-
3
31760367
31760860
-
150
1.70E-72
98
166
170744
170927
-
3
31760873
31762160
-
175
4.40E-89
99
183
179586
179781
+
3
31760873
31761428
-
145
4.40E-76
93
197
171047
171345
-
3
31761429
31762160
-
103
1.90E-46
84
303
189815
191010
+
3
31762165
31762400
-
1191
0
100
1195
130662
130769
+
3
31762165
31762400
-
104
5.30E-47
99
108
123492
123602
+
3
31762455
31762645
-
107
7.60E-49
99
111
152262
152371
+
3
31762455
31762630
-
67
2.30E-24
90
111
152262
152371
-
3
31762455
31762645
-
59
1.70E-25
88
111
125960
126076
+
3
31762699
31762883
-
82
2.10E-32
92
118
125730
125875
-
3
31762884
31763069
-
83
2.60E-35
89
147
122682
122836
+
3
32590379
32590513
+
139
1.70E-89
97
155
126784
126943
-
3
32984963
32985217
-
109
2.40E-61
92
161
124261
124425
-
3
32984963
32985217
-
98
2.40E-63
90
166
129636
129803
+
3
33189242
33189421
-
160
3.60E-81
99
168
128684
128858
-
3
33481226
33481335
-
171
2.00E-91
99
175
212
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
125323
125498
-
3
33481226
33481335
-
91
4.30E-86
88
179
148186
148376
+
3
33745000
33745107
+
191
6.00E-98
100
191
125098
125297
-
3
33745000
33745107
+
95
4.30E-86
87
203
126717
126920
-
3
34439100
34439263
+
200
1.20E-108
100
204
149291
149502
-
3
35364834
35365062
+
208
6.60E-108
100
212
122136
122371
-
3
35364834
35365062
+
216
0
98
236
152058
152327
+
3
35365222
35365404
+
102
1.30E-57
84
282
124164
124445
-
3
35365222
35365404
+
255
5.20E-152
98
283
125663
126051
-
3
35544123
35544251
-
373
6.80E-209
99
389
121411
122138
-
3
35544123
35544251
-
670
0
98
734
32315
32416
+
4
251412
251513
+
102
4.90E-55
100
102
15228
15340
+
4
251412
251513
+
93
7.30E-39
96
113
1901
2031
-
4
257593
257693
+
127
1.20E-59
99
131
26846
26979
-
4
1818101
1818392
+
45
1.10E-70
83
137
32426
32594
-
4
1818101
1818392
+
153
0
98
169
32425
32594
-
4
1818422
1818556
+
158
0
98
170
32425
32594
+
4
1847053
1847243
+
158
0
98
170
32425
32594
-
4
2072348
2072505
+
158
0
98
170
9468
9645
-
4
2072348
2072505
+
174
3.90E-87
99
178
30570
30772
+
4
2072576
2072706
+
191
0
99
203
30570
30772
-
4
2072576
2072706
+
191
0
99
203
30570
30772
-
4
2072896
2073032
+
191
0
99
203
30570
30772
-
4
2072896
2073032
+
175
0
97
203
19979
20184
-
4
2073214
2073430
+
142
3.60E-71
92
206
27005
27295
-
4
2283513
2284008
+
117
1.10E-70
85
297
31194
31503
-
4
4840948
4841139
+
209
2.50E-107
92
313
31662
32036
-
4
5026829
5027029
+
189
1.10E-97
88
377
30772
32416
-
4
5027043
5027167
+
1633
0
100
1645
30772
32416
+
4
5106278
5106395
+
1633
0
100
1645
30772
32416
-
4
5515488
5515752
+
1629
0
100
1645
30772
32416
-
4
5526057
5526318
+
1577
0
99
1645
109755
109868
+
4
7395049
7395421
+
93
1.00E-37
96
113
96428
96559
-
4
7395049
7395421
+
127
3.90E-175
99
131
88496
88656
+
4
8153153
8153258
+
109
7.00E-50
92
161
103995
104173
-
4
8153153
8153258
+
174
9.00E-95
99
178
213
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
114506
114712
-
4
8153634
8153775
+
142
3.70E-71
92
206
92308
92525
-
4
8153634
8153775
+
213
3.90E-175
100
217
87610
88090
-
4
8153780
8153894
+
468
5.40E-262
99
480
49295
49408
+
4
8153780
8153894
+
113
1.00E-76
100
113
49295
49408
+
4
8907662
8907780
+
113
3.20E-77
100
113
79710
79869
+
4
8907662
8907780
+
155
4.60E-162
99
159
56357
56590
+
4
8912464
8912571
+
217
1.10E-110
98
233
54751
55013
-
4
8912464
8912571
+
198
2.50E-101
94
262
54751
55016
-
4
8912730
8912886
+
213
4.50E-108
95
265
79884
80181
+
4
8912730
8912886
+
206
2.50E-110
92
302
62020
62388
+
4
8913206
8913352
+
364
2.60E-247
100
368
50801
51298
+
4
8913206
8913352
+
437
3.10E-243
97
497
78009
78526
+
4
8925515
8925719
+
347
1.70E-221
92
519
485157
487596
-
4
8925515
8925719
+
2352
0
99
2440
483465
485048
-
4
8925872
8926072
+
1535
0
99
1583
452880
453414
-
4
8925872
8926072
+
534
2.20E-299
100
534
484341
484636
+
4
8926417
8926958
+
295
7.30E-163
100
295
480069
480305
-
4
8926417
8926958
+
228
1.50E-117
99
236
463749
463906
+
4
8928569
8928698
+
53
3.20E-90
83
161
463749
463906
+
4
8928569
8928698
+
53
1.20E-89
83
161
463749
463906
+
4
8934146
8934366
+
53
5.00E-91
83
161
464209
464356
+
4
8934381
8934579
+
50
5.00E-91
83
154
464209
464356
+
4
8937018
8937807
+
50
3.20E-90
83
154
464209
464356
+
4
8937810
8938009
+
46
1.20E-89
82
154
458725
458872
+
4
8946011
8946215
+
139
2.80E-68
99
147
453006
453148
-
4
8946011
8946215
+
56
1.80E-72
85
144
457813
457949
-
4
8946368
8946568
+
132
1.00E-60
99
136
452882
452997
-
4
8946368
8946568
+
67
1.80E-72
90
115
463485
463594
+
4
8946914
8947455
+
48
1.20E-89
86
112
463485
463594
+
4
8946914
8947455
+
48
5.00E-91
86
112
463485
463594
+
4
8948057
8948291
+
48
3.20E-90
86
112
452963
453068
+
4
8948057
8948291
+
55
1.80E-46
88
107
447646
447747
+
4
8950115
8950284
+
70
8.30E-43
92
102
427188
427301
-
4
8950115
8950284
+
109
5.10E-95
99
113
427188
427302
-
4
8950293
8951937
+
102
1.40E-100
97
118
414344
414463
-
4
8950293
8951937
+
80
4.40E-122
92
120
214
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
414344
414463
-
4
8951945
8952147
+
80
1.10E-196
92
120
414344
414463
-
4
8951945
8952147
+
80
6.00E-126
92
120
414344
414463
-
4
8964736
8964938
+
80
6.10E-115
92
120
440892
441015
+
4
8964736
8964938
+
89
7.80E-109
93
125
406534
406659
+
4
8964946
8966590
+
77
5.10E-84
90
125
440107
440237
+
4
8964946
8966590
+
94
0
93
130
424410
424542
-
4
8966599
8966768
+
116
8.60E-64
97
132
439730
439863
+
4
8966599
8966768
+
129
8.80E-62
99
133
414613
414750
-
4
8969974
8970163
+
133
9.10E-121
99
137
412725
412864
+
4
8974880
8975588
+
127
0
98
139
412481
412624
+
4
8984065
8984183
+
131
0
98
143
408190
408341
-
4
8984065
8984183
+
147
6.30E-189
99
151
436304
436471
-
4
8991104
8991273
+
96
1.10E-196
89
168
434481
434652
+
4
8991104
8991273
+
171
1.20E-83
100
171
434481
434652
+
4
8991282
8992926
+
163
6.10E-82
99
171
440594
440774
+
4
8991282
8992926
+
134
7.80E-109
93
182
421589
421787
+
4
8992934
8993136
+
190
1.30E-98
99
198
438838
439040
+
4
8992934
8993136
+
142
0
93
202
438838
439040
+
4
9002493
9002611
+
142
0
93
202
406346
406548
+
4
9002493
9002611
+
106
5.10E-84
88
202
407127
407330
+
4
9007297
9007404
+
187
0
98
203
438442
438644
+
4
9007297
9007404
+
109
0
88
209
438442
438644
+
4
9007563
9007719
+
109
0
88
209
411513
411736
+
4
9007563
9007719
+
159
6.00E-101
93
223
407952
408182
-
4
9008039
9008185
+
218
6.30E-189
99
230
439318
439556
-
4
9008039
9008185
+
129
5.40E-70
88
241
441362
441695
+
4
9025139
9025443
+
286
7.50E-155
96
334
411337
411693
+
4
9025751
9025909
+
348
0
99
356
414359
414792
+
4
9026271
9026638
+
429
0
100
433
439318
439863
+
4
9026271
9027900
+
293
0
88
549
439318
439863
+
4
9027910
9028180
+
293
0
88
549
406344
407134
+
4
9028242
9030294
+
709
0
97
791
410371
411324
+
4
9030303
9031970
+
929
0
99
953
411687
412738
+
4
9031955
9032854
+
1003
0
99
1051
412862
414287
+
4
9032859
9033019
+
1369
0
99
1425
414800
417091
+
4
9032964
9033129
+
2209
0
99
2291
215
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
366559
366660
+
4
9032964
9033129
+
70
1.70E-43
92
102
371876
371981
+
4
9035943
9036116
+
55
3.60E-47
88
107
382398
382507
+
4
9037248
9037357
+
48
4.60E-92
86
112
382398
382507
+
4
9043093
9043211
+
48
1.20E-91
86
112
382398
382507
+
4
9043093
9043211
+
48
4.80E-226
86
112
371795
371910
-
4
9047897
9048004
+
67
7.10E-74
90
115
376726
376862
-
4
9047897
9048004
+
132
6.80E-66
99
136
371919
372061
-
4
9048163
9048319
+
56
7.10E-74
85
144
377638
377785
+
4
9048163
9048319
+
139
4.60E-70
99
147
383122
383269
+
4
9048639
9048785
+
50
4.60E-92
83
154
383122
383269
+
4
9048639
9048785
+
50
1.20E-91
83
154
383122
383269
+
4
9527976
9528088
+
46
4.80E-226
82
154
382662
382819
+
4
9528138
9528308
+
53
1.20E-91
83
161
382662
382819
+
4
9528138
9528308
+
53
4.60E-92
83
161
382662
382819
+
4
9528472
9528584
+
53
4.80E-226
83
161
388757
388961
-
4
9528472
9528584
+
200
7.20E-102
100
204
390599
390901
+
4
9690679
9690810
+
245
4.80E-226
95
305
390599
390901
-
4
9690679
9690810
+
213
9.00E-112
92
309
395715
396033
+
4
9690844
9691040
+
278
2.30E-149
97
318
371793
372327
-
4
10784387
10784902
+
534
2.00E-301
100
534
395692
396401
-
4
10784978
10785251
+
673
0
99
709
351546
351652
-
4
10881448
10881756
+
106
2.10E-46
100
106
346101
346214
-
4
10968758
10968896
+
109
5.10E-95
99
113
335321
335437
-
4
11007866
11007969
+
112
9.50E-52
99
116
360333
360448
+
4
11117281
11117482
+
53
5.10E-42
86
117
346101
346215
-
4
11117487
11117662
+
102
1.40E-100
97
118
360467
360584
+
4
11472173
11472278
+
61
5.10E-42
88
121
359805
359928
+
4
12376082
12376615
+
89
7.70E-109
93
125
359020
359150
+
4
12376082
12376615
+
94
0
93
130
343323
343455
-
4
13435539
13435872
+
116
4.80E-62
97
132
358643
358776
+
4
13435539
13435872
+
129
7.00E-62
99
133
355217
355384
-
4
13661538
13661832
+
96
6.10E-73
89
168
353394
353565
+
4
13824125
13824242
-
171
5.50E-85
100
171
353394
353565
+
4
13824125
13824242
-
163
6.00E-82
99
171
359507
359687
+
4
13824406
13824576
-
134
7.70E-109
93
182
329900
330091
+
4
13824406
13824576
-
92
5.90E-49
87
196
216
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
324211
324408
+
4
13824626
13824738
-
185
1.70E-94
98
197
340502
340700
+
4
14044424
14044733
+
190
1.20E-98
99
198
357751
357953
+
4
14044424
14044733
+
142
0
93
202
357751
357953
+
4
14207065
14207359
+
142
0
93
202
357355
357557
+
4
14207065
14207359
+
109
0
88
209
357355
357557
+
4
15081254
15081386
+
109
0
88
209
336101
336326
-
4
15081317
15081543
+
193
6.70E-100
96
225
358231
358469
-
4
15678501
15678976
+
129
1.00E-60
88
241
360275
360608
+
4
15946318
15946761
+
286
7.40E-155
96
334
358231
358776
+
4
16148981
16149186
+
293
0
88
549
358231
358776
+
4
16148981
16149186
+
293
0
88
549
290625
292679
-
4
16149197
16149297
+
1999
0
99
2055
283879
285573
+
4
16149197
16149297
+
1650
0
99
1694
288949
290617
-
4
16149460
16149572
+
1644
0
100
1668
292957
294587
-
4
16149460
16149572
+
1606
0
100
1630
307848
309345
+
4
16149567
16149726
+
1362
0
98
1498
310420
311585
+
4
17833229
17833361
+
1134
0
99
1166
288083
288990
-
4
17833229
17833361
+
843
0
98
907
311613
312465
+
4
17859505
17859822
+
828
0
99
852
309354
310081
+
4
18370703
18370875
+
614
0
96
730
283438
283871
+
4
18388608
18388732
+
429
0
100
433
289301
289689
-
4
18637619
18637827
+
376
1.60E-208
99
388
292957
293271
+
4
18708289
18708389
+
310
0
100
314
307533
307839
+
4
19565504
19565726
+
302
0
100
306
293899
294192
-
4
19565504
19565726
+
229
1.10E-123
95
293
296665
296937
+
4
19565504
19565726
+
178
6.50E-89
91
274
292677
292948
-
4
20107620
20107723
+
267
0
100
271
292677
292948
+
4
20200106
20200241
+
255
0
99
271
289462
289697
+
4
20200106
20200241
+
133
1.70E-66
89
237
292249
292449
+
4
20628579
20628759
+
143
1.00E-124
93
203
292474
292647
+
4
20628579
20628759
+
116
1.00E-124
91
176
307350
307525
+
4
20628822
20628946
+
163
0
98
175
321781
321953
+
4
20628822
20628946
+
123
8.20E-93
93
175
287933
288094
-
4
21426583
21426704
+
161
0
100
161
289398
289534
+
4
21798958
21799154
+
87
4.40E-39
91
139
283692
283829
-
4
21798958
21799154
+
133
3.20E-64
99
137
217
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
310091
310222
+
4
22447109
22447401
+
119
0
98
131
283423
283542
-
4
22782269
22782376
+
80
0
92
120
283423
283542
-
4
22825217
22825332
+
80
1.10E-87
92
120
283423
283542
-
4
23268276
23268391
+
80
4.00E-85
92
120
283423
283542
-
4
23268846
23269116
+
80
1.10E-85
92
120
283423
283539
+
4
23269126
23269439
+
70
0
90
118
246083
246260
+
4
23278537
23278705
+
86
7.40E-87
87
178
247260
247370
+
4
23278537
23278705
+
47
7.40E-87
86
111
254890
255101
+
4
23278715
23280358
+
148
1.50E-77
92
216
257830
257981
-
4
23278715
23280358
+
143
0
99
151
258080
258887
-
4
23280366
23280568
+
783
0
99
807
258901
260492
-
4
23280366
23280568
+
1555
0
99
1591
260492
261446
-
4
24293682
24293828
+
902
0
99
954
261464
262608
-
4
24293682
24293828
+
1100
0
99
1144
265281
265471
-
4
24586395
24586598
+
164
6.00E-80
96
192
265287
265413
+
4
25973650
25973766
+
118
3.70E-54
98
126
267343
267535
-
4
25973765
25973884
+
108
2.50E-49
89
196
268296
268494
-
4
27097254
27097486
+
143
2.00E-198
93
199
268508
268729
-
4
27133310
27133697
+
193
2.00E-198
97
221
268626
270116
+
4
27248014
27248164
+
1434
0
99
1490
269019
269162
+
4
27248175
27248404
+
139
0
99
143
269191
269397
-
4
30017409
30017888
+
145
9.60E-72
92
209
270124
271851
+
4
30706767
30707002
+
1671
0
99
1727
271912
273654
+
4
30706767
30707002
+
1666
0
99
1742
274921
275025
+
4
32431757
32433242
+
37
5.20E-07
84
105
276453
276611
-
4
32432150
32432292
+
154
5.30E-79
99
158
279456
280409
+
4
32432150
32432292
+
925
0
99
953
280422
280778
+
4
32432150
32432292
+
348
0
99
356
280598
280821
+
4
32433243
32434969
+
159
2.30E-100
93
223
280772
281823
+
4
32435029
32436764
+
1003
0
99
1051
281566
281709
+
4
32437696
32438839
+
131
0
98
143
281810
281949
+
4
32438839
32439792
+
127
0
98
139
281947
283297
+
4
32439804
32441392
+
1298
0
99
1350
282917
283035
+
4
32441384
32442190
+
90
9.90E-39
94
118
212337
222766
-
4
32442303
32442453
+
387
8.40E-214
97
447
217321
232449
-
4
32442454
32442627
+
154
1.90E-94
99
158
218
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
220324
239250
+
4
32442636
32442941
+
929
0
99
953
221290
240585
+
4
32442950
32444444
+
348
0
99
356
221466
240804
+
4
32444457
32445179
+
159
9.00E-100
93
223
221640
241980
+
4
32445190
32445319
+
1003
0
99
1051
222434
242660
+
4
32445316
32446480
+
131
0
98
143
222678
243144
+
4
32446473
32447324
+
127
0
98
139
222815
243776
+
4
32447570
32450005
+
485
0
99
497
229792
257355
-
4
32447570
32450005
+
110
7.90E-48
98
122
238535
275194
+
4
32450001
32451582
+
226
5.60E-118
87
482
168039
168140
+
4
32450067
32451582
+
65
1.60E-47
91
101
196824
196928
+
4
32451573
32452524
+
104
1.20E-45
100
104
177056
177162
-
4
32451573
32452524
+
78
1.60E-89
93
106
165686
165800
+
4
32451573
32452524
+
54
9.90E-29
87
114
177207
177346
-
4
32452539
32452894
+
115
1.60E-89
96
139
179166
179325
-
4
32452539
32452894
+
143
4.00E-67
97
159
162056
164495
-
4
32452539
32452894
+
2352
0
99
2440
126842
126943
+
4
32455870
32456918
+
102
1.90E-54
100
102
126953
127121
-
4
32455870
32456918
+
153
0
98
169
126952
127121
-
4
32455870
32456918
+
158
0
98
170
126952
127121
-
4
32456664
32456806
+
158
0
98
170
126952
127121
+
4
32456714
32456891
+
158
0
98
170
125097
125299
-
4
32456714
32456891
+
191
0
99
203
125097
125299
-
4
32456916
32457054
+
191
0
99
203
125097
125299
+
4
32456916
32457054
+
191
0
99
203
125097
125299
-
4
32456916
32457054
+
175
0
97
203
156968
157203
-
4
32457062
32458486
+
232
6.90E-122
100
236
161240
161534
+
4
32457062
32458411
+
295
4.50E-165
100
295
121532
121822
-
4
32457062
32457558
+
117
1.00E-61
85
297
125721
126030
-
4
32486318
32486750
+
209
5.00E-107
92
313
126189
126563
-
4
32486318
32486750
+
189
1.10E-97
88
377
160364
161880
-
4
32486762
32489051
+
1473
0
99
1517
125299
126943
-
4
32486762
32488455
+
1633
0
100
1645
125299
126943
+
4
32972163
32972378
+
1633
0
100
1645
125299
126943
-
4
33308965
33309123
+
1629
0
100
1645
125299
126943
-
4
33309121
33309345
+
1577
0
99
1645
219
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
28579
28707
+
5
690791
690925
+
101
0
95
129
27905
28055
+
5
691054
691274
+
127
0
96
151
6932
7094
+
5
691275
691419
+
147
7.80E-75
98
163
6174
6360
+
5
884190
884308
+
120
2.00E-89
91
192
27609
27844
+
5
884190
884308
+
208
0
97
236
28153
28583
+
5
2409125
2409251
+
331
0
94
435
26915
27611
+
5
3303501
3303634
+
643
0
98
703
28718
29762
+
5
3537643
3537814
+
934
0
97
1046
97562
97690
-
5
3845779
3845953
+
82
3.20E-37
91
130
108041
108191
-
5
3845779
3845953
+
116
2.80E-55
94
152
101459
101622
+
5
3845958
3846072
+
147
1.30E-73
98
163
100701
100888
+
5
3845958
3846072
+
120
2.10E-89
91
192
49219
49341
+
5
3862527
3862624
+
118
9.70E-57
99
122
44911
45146
-
5
3862527
3862624
+
183
1.10E-93
94
235
62020
62388
+
5
3862754
3862886
+
356
5.70E-198
99
368
453006
453181
-
5
3862754
3862886
+
86
4.60E-96
87
178
457975
458106
-
5
4629994
4630353
+
89
2.70E-67
92
133
452882
452997
-
5
5004323
5004460
+
67
4.60E-96
90
115
489122
489231
+
5
6384203
6384374
+
98
1.10E-58
97
110
458255
458357
-
5
8827010
8827201
+
50
2.70E-67
87
102
414344
414463
+
5
8827010
8827201
+
80
4.20E-118
92
120
414344
414463
+
5
9249960
9250081
+
80
3.60E-95
92
120
434601
434804
+
5
10727034
10727520
+
136
1.00E-67
92
204
440182
440434
-
5
12504619
12504760
+
248
2.10E-131
100
252
440182
440434
+
5
12712201
12712390
+
244
5.50E-128
99
252
377168
377270
-
5
12778225
12778398
+
50
2.10E-66
87
102
371795
371910
-
5
12779169
12779536
+
67
2.90E-96
90
115
376888
377019
-
5
12779169
12780798
+
89
2.10E-66
92
133
402836
402977
+
5
12785239
12785357
+
122
3.10E-64
96
142
371919
372094
-
5
12785239
12785357
+
86
2.90E-96
87
178
329900
330091
-
5
12801914
12803842
+
92
8.70E-76
87
196
329900
330091
+
5
12803851
12804776
+
84
1.20E-66
86
196
353514
353717
+
5
13552619
13552923
+
136
1.30E-63
92
204
359095
359347
-
5
13552926
13553155
+
248
6.90E-133
100
252
359095
359347
+
5
15612100
15612351
+
244
4.20E-131
99
252
290625
292552
-
5
15612100
15612351
+
1846
0
99
1930
220
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
292957
294587
-
5
15658529
15658780
+
1578
0
99
1630
289692
290617
-
5
15658529
15658780
+
906
0
99
926
289208
289697
-
5
16540142
16540289
+
320
1.20E-187
91
496
316249
316555
-
5
17749735
17749977
+
274
3.20E-145
97
306
319857
320099
+
5
17750104
17750213
+
203
2.50E-103
96
243
306786
306977
+
5
17750104
17750213
+
187
1.70E-95
99
191
295354
295499
-
5
17791990
17792295
+
121
3.80E-57
96
145
288144
288278
-
5
18495277
18495480
+
103
1.70E-46
94
135
283423
283542
+
5
19001793
19001944
+
80
7.50E-91
92
120
283423
283542
+
5
19217213
19217403
+
80
3.30E-87
92
120
246083
246260
+
5
19217777
19217941
+
90
2.60E-73
88
178
264465
264630
-
5
19501357
19501546
+
157
1.80E-104
99
165
265045
265178
-
5
20783405
20784105
+
90
1.30E-37
91
138
266037
266210
-
5
20783405
20784105
+
141
7.30E-69
95
173
212024
221846
-
5
20784110
20784345
+
121
1.70E-65
95
149
212571
223150
+
5
20784110
20784345
+
293
1.30E-157
95
361
229657
257185
+
5
20784616
20784765
+
194
1.20E-99
97
222
166021
166130
+
5
20784616
20784765
+
98
8.00E-59
97
110
188317
188452
-
5
20784874
20785303
+
89
3.10E-35
91
137
187812
187984
-
5
20784874
20785303
+
164
5.80E-79
99
172
176932
177137
+
5
20785310
20785436
+
113
6.80E-53
89
209
189307
189538
-
5
20785310
20785436
+
164
3.20E-200
93
232
189511
189813
-
5
20785446
20786488
+
217
3.20E-200
93
305
170772
171104
+
5
20785446
20786488
+
328
1.90E-175
100
332
126257
126383
-
5
23804044
23804375
+
83
1.60E-45
91
127
123106
123234
+
5
23959439
23959669
+
101
0
95
129
122432
122582
+
5
23959439
23959673
+
127
0
96
151
139437
139672
-
5
25022954
25023156
+
216
1.80E-111
98
236
122136
122371
+
5
25022954
25023156
+
208
0
97
236
122680
123110
+
5
25675573
25675735
+
331
0
94
435
121442
122138
+
5
25675573
25675735
+
643
0
98
703
123245
124289
+
5
29213895
29214023
+
934
0
97
1046
32431
32531
+
6
1094075
1094422
+
68
3.00E-108
91
104
32145
32250
+
6
1094075
1094422
+
70
3.00E-108
92
106
27490
27611
+
6
1094435
1095606
+
110
0
98
122
221
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
29404
29544
-
6
1094435
1094990
+
125
1.40E-56
97
141
30519
30660
-
6
1094991
1095606
+
118
0
96
142
35155
35304
+
6
1106818
1106938
+
110
1.10E-86
93
150
27905
28055
-
6
1106818
1106938
+
139
0
98
151
32257
32405
+
6
4068518
4069121
+
107
3.00E-108
93
151
12013
12183
-
6
4069506
4069660
+
163
1.50E-79
99
171
32873
33074
+
6
4070139
4070289
+
198
2.50E-99
100
202
1297
1529
+
6
4070356
4070500
+
225
2.60E-121
99
233
27609
27844
-
6
4070573
4070699
+
216
0
98
236
31362
31609
+
6
4070952
4071203
+
133
9.20E-65
88
249
25585
25838
-
6
4071228
4071372
+
185
0
93
261
25585
25838
-
6
4674801
4674915
+
173
1.60E-281
92
261
26581
26912
-
6
5512242
5512396
+
312
2.30E-170
98
332
25982
26324
+
6
5858067
5858261
+
289
0
96
349
25834
26240
-
6
5893195
5893365
+
347
1.60E-281
96
411
28159
28583
-
6
5893195
5893365
+
337
0
95
429
25834
26324
-
6
7433476
7433736
+
443
0
97
495
26328
27495
+
6
8414179
8414285
+
1062
0
98
1174
26328
27611
-
6
9347182
9347305
+
1184
0
98
1292
28727
30249
-
6
9347182
9347305
+
1419
0
98
1527
100154
100257
+
6
9347305
9347460
+
99
1.80E-42
99
103
107940
108056
-
6
9347305
9347460
+
88
7.90E-38
94
116
106540
106711
-
6
9347460
9347635
+
163
1.40E-78
99
171
95824
96057
+
6
9347718
9347847
+
225
1.10E-118
99
233
120112
120366
-
6
9348026
9348134
+
185
0
93
261
120112
120366
-
6
9348026
9348134
+
173
1.60E-281
92
261
121108
121411
-
6
9348245
9348454
+
287
3.00E-158
99
303
120509
120852
+
6
9348245
9348454
+
289
0
96
349
120361
120768
-
6
9348245
9348454
+
347
1.60E-281
96
411
120361
120852
-
6
9348683
9348815
+
443
0
97
495
120855
121411
-
6
9349099
9349300
+
532
0
99
556
120855
121411
+
6
9349099
9349300
+
524
0
99
556
47183
47287
+
6
9349371
9349482
+
104
0
100
104
75005
75112
-
6
9349371
9349482
+
87
4.20E-36
95
107
62524
63236
-
6
9349872
9349976
+
692
0
99
712
44620
47168
+
6
9350085
9350220
+
2327
0
98
2554
222
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
41292
44668
+
6
9350085
9350220
+
3196
0
99
3384
47295
51269
+
6
9350597
9350705
+
3709
0
98
3977
449818
450104
-
6
9350597
9350705
+
282
5.20E-184
100
286
472321
472557
-
6
9350895
9351070
+
212
1.80E-117
97
236
464207
464399
-
6
11159600
11159933
+
188
2.10E-94
99
192
482717
482889
-
6
11159600
11159933
+
137
3.10E-65
95
173
455761
455898
-
6
11293040
11293282
+
121
1.00E-55
97
137
463944
464056
+
6
11346732
11346880
+
112
7.10E-90
100
112
431705
431814
-
6
11779700
11779821
+
109
8.00E-260
100
109
433257
433366
-
6
11779700
11779821
+
109
3.00E-152
100
109
441957
442081
-
6
11779884
11780065
+
124
8.00E-260
100
124
440892
441015
-
6
11779884
11780065
+
77
1.30E-98
90
125
416274
416402
+
6
12201203
12201505
+
128
2.60E-59
100
128
442305
442427
-
6
12504799
12508175
+
77
0
90
129
431500
431636
-
6
12504799
12508175
+
136
1.00E-64
100
136
428254
428390
+
6
12508180
12510721
+
132
6.30E-183
99
136
441273
441417
-
6
12508180
12510187
+
120
8.90E-55
96
144
425629
425785
+
6
12510737
12510840
+
144
6.30E-183
98
156
411966
412134
+
6
12510846
12514816
+
140
1.20E-88
96
168
440594
440774
-
6
12514816
12515527
+
131
1.30E-98
93
183
410695
410905
-
6
12515628
12516892
+
210
8.00E-260
100
210
431979
432198
-
6
12515965
12516108
+
207
5.00E-114
99
219
413799
414133
-
6
12522736
12526127
+
232
4.60E-122
92
336
441345
442306
-
6
12526359
12526883
+
801
0
96
961
441260
442265
-
6
12526959
12528735
+
841
0
96
1005
382857
382969
+
6
12528744
12529587
+
112
3.00E-92
100
112
397977
398110
-
6
12529601
12529731
+
133
2.50E-158
100
133
374674
374811
-
6
12529842
12530382
+
121
3.70E-54
97
137
395692
395844
-
6
12530377
12531923
+
140
0
98
152
383120
383312
-
6
12531929
12532267
+
188
3.40E-95
99
192
368731
369017
-
6
12532276
12532392
+
282
9.40E-185
100
286
395823
396401
-
6
12532397
12533033
+
534
0
98
578
350618
350727
-
6
12533043
12534389
+
109
5.10E-127
100
109
352170
352279
-
6
12534470
12535838
+
109
5.20E-153
100
109
360870
360994
-
6
12535898
12536133
+
124
5.20E-153
100
124
359805
359928
-
6
12535898
12536133
+
77
1.30E-98
90
125
223
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
361218
361340
-
6
12535898
12536133
+
77
0
90
129
350413
350549
-
6
12743717
12744123
+
136
3.80E-65
100
136
347167
347303
+
6
12743717
12744123
+
132
4.10E-184
99
136
360186
360330
-
6
12744131
12744390
+
120
7.80E-83
96
144
344542
344698
+
6
12744131
12744390
+
144
4.10E-184
98
156
359507
359687
-
6
12745768
12745895
+
131
1.30E-98
93
183
329900
330091
+
6
12745768
12745895
+
92
4.90E-68
87
196
350892
351111
-
6
12745901
12746855
+
207
4.20E-106
99
219
360258
361219
-
6
12745901
12746855
+
801
0
96
961
360173
361178
-
6
12745937
12746936
+
841
0
96
1005
299906
300510
+
6
12745937
12746936
+
341
0
89
605
289443
289877
+
6
13473367
13473800
+
295
6.60E-159
92
435
299967
300306
+
6
13712813
13713151
+
254
3.40E-266
94
342
293891
294153
-
6
13713158
13713293
+
172
2.60E-88
91
264
302344
302596
+
6
13732852
13733001
+
147
0
89
255
291762
291946
+
6
13798623
13798789
+
168
8.70E-80
98
184
307204
307384
-
6
13798623
13798789
+
164
1.80E-80
98
180
295160
295324
-
6
13798623
13798789
+
164
1.10E-80
100
164
312288
312450
-
6
14188371
14188603
+
155
1.90E-75
99
163
300919
301075
+
6
14188371
14188603
+
96
0
90
156
317411
317566
-
6
14188729
14188947
+
143
5.00E-70
98
155
301603
301753
+
6
14188729
14188947
+
57
0
84
153
301695
301845
-
6
14544679
14544815
+
126
3.90E-59
96
150
302616
302764
+
6
14544679
14544815
+
65
0
86
149
301804
301949
+
6
14547762
14547933
+
97
0
92
145
300322
300458
+
6
14547762
14547933
+
74
3.40E-266
88
138
303434
303564
+
6
16054456
16054583
+
126
2.60E-58
99
130
285353
285481
+
6
16055174
16055459
+
128
1.90E-59
100
128
302017
302144
+
6
16055174
16055459
+
67
0
88
127
288673
288792
+
6
16055457
16055597
+
107
1.30E-102
97
119
302534
302643
+
6
16055550
16055943
+
109
1.30E-102
100
109
293512
293617
-
6
16055952
16056057
+
101
3.30E-45
99
105
244887
245002
-
6
16740593
16740784
+
91
8.90E-40
95
115
248247
248545
-
6
16740593
16740784
+
208
5.40E-107
92
308
267541
267680
+
6
16821074
16821237
+
107
5.10E-52
94
139
268296
268485
+
6
17148886
17148988
+
90
4.00E-51
86
198
224
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
270011
270187
+
6
17149033
17149212
+
176
2.20E-106
100
176
271336
271512
-
6
17970077
17970177
+
156
2.70E-143
97
176
279780
279990
-
6
22859089
22859200
-
210
9.10E-172
100
210
281051
281219
+
6
23206405
23206540
+
140
2.40E-90
96
168
282884
283218
-
6
23206405
23206540
+
232
4.60E-122
92
336
202615
203515
+
6
23520379
23520568
+
593
0
98
637
203260
205514
+
6
23525288
23525865
+
1283
0
99
1347
204680
208378
+
6
23525866
23526017
+
1285
0
98
1369
206274
210433
+
6
23533598
23533747
+
212
0
97
236
220648
239155
-
6
23533598
23533747
+
210
7.00E-140
100
210
221919
241655
+
6
23541990
23542131
+
140
3.60E-88
96
168
225220
248321
+
6
23541990
23542131
+
98
8.10E-50
85
238
225475
248691
+
6
23542410
23543935
+
28
8.10E-50
82
100
232467
262689
-
6
23542410
23543935
+
102
5.20E-47
99
106
233859
265516
-
6
23544106
23544529
+
145
3.70E-86
99
149
237383
272543
+
6
23544106
23544535
+
128
6.10E-60
100
128
237931
273691
-
6
23544644
23544794
+
93
1.90E-40
87
189
190067
190168
+
6
23544644
23544794
+
85
7.50E-36
96
101
201885
201993
+
6
23545065
23545300
+
88
1.10E-267
95
108
200845
200959
-
6
23545065
23545300
+
66
4.10E-40
89
114
201885
202003
+
6
23545305
23546592
+
94
0
95
118
199192
199323
+
6
23545305
23546036
+
119
0
98
131
201402
201538
+
6
23546037
23546592
+
105
1.10E-267
94
141
182567
182710
+
6
23546605
23547098
+
92
0
91
144
168246
168488
-
6
23546605
23547098
+
97
3.90E-49
85
249
201537
201877
+
6
23547106
23547365
+
286
0
96
342
201490
201877
+
6
23547106
23547365
+
319
1.10E-267
95
395
196006
196532
+
6
23669884
23669988
+
494
0
98
526
199434
199975
+
6
23669884
23669988
+
501
0
98
541
198340
199184
+
6
23669982
23670132
+
784
0
98
844
191362
192627
+
6
23669982
23670132
+
1182
0
98
1266
199997
201538
+
6
23670151
23670254
+
1407
0
98
1547
196555
198332
+
6
23670151
23670254
+
1713
0
99
1777
192621
196014
+
6
24509903
24510233
+
3233
0
99
3393
126958
127058
+
6
24509932
24510233
+
68
2.10E-109
91
104
126672
126777
+
6
25747398
25747525
+
70
2.10E-109
92
106
225
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
122017
122138
+
6
25747398
25747525
+
110
0
98
122
123931
124071
-
6
25964004
25964147
+
125
2.00E-59
97
141
125046
125187
-
6
25964004
25964147
+
118
0
96
142
129682
129831
+
6
25967673
25967854
+
110
3.10E-85
93
150
122432
122582
-
6
26050547
26050685
+
139
0
98
151
126784
126932
+
6
26051444
26051556
+
107
2.10E-109
93
151
159616
159787
-
6
27759749
27759934
+
137
1.60E-66
95
173
127400
127601
+
6
28216361
28216523
+
198
1.10E-102
100
202
122136
122371
-
6
28216824
28216942
+
216
0
98
236
149220
149455
-
6
28216944
28217052
+
212
1.10E-117
97
236
125889
126136
+
6
28217053
28217158
+
133
1.40E-63
88
249
122680
123110
-
6
28217316
28217456
+
343
0
95
435
121411
122022
+
6
28217316
28217456
+
538
0
97
618
121411
122138
-
6
28286975
28287219
+
652
0
97
736
123254
124776
-
6
28286975
28287219
+
1419
0
98
1527
139153
141160
+
6
30216931
30217159
+
1928
0
99
2008
135819
139200
+
6
30217174
30217273
+
3242
0
99
3382
37207
37355
-
7
1640139
1640409
+
137
2.60E-65
98
149
32425
32594
+
7
1901765
1901927
+
158
0
98
170
30570
30772
+
7
2110665
2110767
+
191
0
99
203
16166
16388
+
7
4475047
4475153
+
204
3.40E-105
98
224
30772
32416
+
7
5043941
5044081
+
1633
0
100
1645
98994
99107
+
7
5423818
5423949
+
113
6.90E-52
100
113
113744
113858
-
7
5817380
5817548
+
84
4.80E-35
93
116
95163
95352
-
7
6784394
6784640
+
113
2.60E-49
90
189
110693
110916
+
7
7970350
7970615
+
204
5.80E-107
98
224
61186
61302
+
7
8369184
8369518
+
116
6.50E-52
100
116
69644
69776
-
7
8369184
8369518
+
120
7.30E-55
98
132
78923
79064
+
7
8369184
8369518
+
133
3.10E-63
99
141
49530
49711
+
7
9784990
9785138
+
86
2.00E-35
87
182
75658
75841
-
7
11520954
11521080
+
169
5.30E-86
98
185
56735
57006
-
7
12439725
12439997
+
255
6.10E-135
99
271
447669
447866
+
7
12760406
12760521
+
177
2.80E-88
97
197
444392
444504
+
7
13500978
13501226
+
104
1.40E-47
98
112
414344
414463
+
7
13500978
13501226
+
80
3.20E-118
92
120
226
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
406768
406890
+
7
14231405
14231523
+
122
5.20E-56
100
122
413759
413943
-
7
14231405
14231523
+
136
1.10E-64
93
188
414813
415062
+
7
14240880
14241082
+
202
1.10E-105
95
250
409442
409777
-
7
14240880
14241082
+
303
3.40E-163
98
335
366582
366779
+
7
14241090
14242734
+
177
2.00E-88
97
197
359631
359733
+
7
14241090
14242734
+
98
1.90E-42
99
102
363305
363417
+
7
14242743
14242912
+
104
1.40E-47
98
112
330836
331028
-
7
14242743
14242912
+
176
1.00E-87
98
192
329900
330091
-
7
14574536
14574651
+
92
1.50E-56
87
196
288688
288990
+
7
15130519
15130710
+
246
1.90E-243
95
302
296535
296803
-
7
16447676
16447824
+
166
1.50E-82
90
274
300199
300470
+
7
16447676
16447824
+
179
4.60E-92
92
271
283892
284141
+
7
16447825
16448087
+
202
3.00E-104
95
250
293057
293282
+
7
17536741
17536971
+
217
1.50E-116
99
225
321473
321676
-
7
17637771
17637955
+
85
6.20E-50
85
209
321473
321677
-
7
19608208
19608395
+
111
1.50E-62
88
207
293009
293172
-
7
20759746
20759867
+
139
2.70E-66
96
163
288950
289083
+
7
20759868
20760064
+
129
1.90E-243
99
133
283423
283542
+
7
20759868
20760064
+
80
1.60E-87
92
120
252704
252935
-
7
21839513
21839737
+
207
3.20E-103
97
231
271274
271402
-
7
22133904
22134091
+
104
3.30E-49
95
128
273410
273654
+
7
22133904
22134091
+
140
1.20E-98
89
248
278527
278862
-
7
22173202
22173313
+
303
5.20E-162
98
335
282844
283028
-
7
22173202
22173313
+
136
6.50E-66
93
188
205617
209092
-
7
22173414
22173624
+
171
1.90E-83
95
211
211021
219999
-
7
22995858
22996153
+
230
7.80E-126
93
314
219395
236774
-
7
22996139
22996271
+
299
1.00E-162
97
335
225185
248168
-
7
23275678
23275901
+
149
7.90E-72
100
149
227987
253792
-
7
23275678
23275901
+
153
2.10E-118
98
169
173271
173373
-
7
23859032
23859144
+
99
9.60E-45
99
103
192803
193066
-
7
25283901
25284214
+
251
5.50E-134
99
263
125730
125838
-
7
26362902
26363106
+
85
4.70E-37
95
109
131734
131882
-
7
26372154
26372359
+
137
1.00E-64
98
149
126952
127121
+
7
27974759
27974948
+
158
0
98
170
125097
125299
+
7
28804632
28804810
+
191
0
99
203
125299
126943
+
7
28938574
28938675
+
1633
0
100
1645
227
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
13904
14011
-
8
6782
7246
+
81
9.20E-61
94
109
13904
14031
-
8
7267
7415
+
88
1.10E-70
92
128
31203
31348
+
8
9822
9943
+
90
1.20E-96
90
146
35155
35304
+
8
467375
467617
+
118
0
95
150
16052
16221
+
8
593433
593540
+
162
2.60E-81
99
170
32425
32594
-
8
593433
593540
+
158
0
98
170
32425
32594
+
8
620340
620466
+
158
0
98
170
31321
31520
-
8
620340
620466
+
128
1.60E-63
91
200
30570
30772
+
8
1946096
1946456
+
191
0
99
203
12445
12665
+
8
1946469
1946681
+
119
1.20E-96
88
223
26761
27016
-
8
5797578
5797768
+
194
2.10E-260
94
258
26360
26667
-
8
5797578
5797768
+
245
2.10E-260
95
309
30772
32416
+
8
5811858
5812135
+
1629
0
100
1645
30772
32416
-
8
5812135
5812279
+
1625
0
100
1645
108431
108539
-
8
5838689
5839136
+
81
9.40E-61
94
109
121288
121408
-
8
7742743
7742906
+
100
4.60E-205
96
120
108431
108559
-
8
8768893
8769060
+
88
7.20E-70
92
128
91166
91330
+
8
9239530
9239676
+
152
9.10E-74
98
164
110579
110749
+
8
9239530
9239676
+
162
9.10E-84
99
170
91793
92009
-
8
9239996
9240152
+
164
2.50E-233
94
216
106972
107193
+
8
9239996
9240152
+
119
6.10E-57
88
223
120887
121195
-
8
9240311
9240418
+
245
4.60E-205
95
309
92008
92362
-
8
9240311
9240418
+
269
2.50E-233
94
361
73458
73629
-
8
9244818
9244936
+
119
3.10E-58
92
171
59941
60303
-
8
9244818
9244936
+
330
1.60E-179
98
362
463749
463906
-
8
9254294
9254496
+
53
7.20E-88
83
161
464209
464356
-
8
9254294
9254496
+
50
7.20E-88
83
154
450940
451058
+
8
9254504
9256148
+
110
1.50E-47
98
118
463485
463594
-
8
9254504
9256148
+
48
7.20E-88
86
112
414344
414463
+
8
9256157
9256326
+
80
9.30E-118
92
120
405096
405218
-
8
9256157
9256326
+
114
3.60E-55
98
122
413931
414096
+
8
9259482
9259671
+
149
1.20E-73
98
165
444149
444332
-
8
9264393
9265100
+
80
2.40E-61
85
192
407569
407769
-
8
9272687
9272836
+
200
1.20E-102
100
200
411434
411717
+
8
9272687
9272836
+
267
1.90E-141
99
283
228
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
382398
382507
-
8
9632198
9632494
+
48
2.80E-88
86
112
369853
369971
+
8
11408568
11408943
+
110
6.40E-49
98
118
383122
383269
-
8
11514218
11514387
+
50
2.80E-88
83
154
382662
382819
-
8
11514218
11514387
+
53
2.80E-88
83
161
396341
396619
+
8
12037958
12038158
+
278
3.10E-147
100
278
395284
395602
+
8
12792635
12793080
+
281
5.10E-147
97
321
395692
396401
-
8
12793080
12793362
+
665
0
98
709
353515
353651
+
8
12793080
12793362
+
100
9.50E-44
93
136
327014
327194
+
8
12793080
12793362
+
132
9.80E-63
93
180
363062
363245
-
8
13231108
13231469
+
80
2.40E-61
85
192
329900
330091
+
8
14983304
14983520
+
92
1.10E-74
87
196
337923
338139
+
8
15136742
15136929
+
141
6.70E-164
91
217
338119
338361
+
8
16395635
16395892
+
179
6.70E-164
93
243
289599
290158
+
8
16395635
16395769
+
551
3.30E-308
100
559
290828
291269
+
8
16395773
16395892
+
352
4.60E-190
95
448
293212
293512
-
8
16395989
16396295
+
200
2.60E-104
92
300
298326
298614
+
8
16395989
16396295
+
240
3.70E-126
96
288
289811
290025
+
8
17047231
17047377
+
187
8.40E-95
96
219
291795
291996
+
8
17056175
17056395
+
197
4.30E-105
100
201
286936
287100
+
8
17056175
17056395
+
126
6.60E-60
94
166
308853
308998
-
8
17080783
17080923
+
141
6.50E-69
99
145
283423
283542
+
8
17080783
17080923
+
80
3.10E-88
92
120
245691
245978
+
8
17346755
17347040
+
251
8.90E-135
97
287
263369
263611
-
8
17477317
17477446
+
181
6.60E-88
93
245
270139
270283
-
8
17552702
17552917
+
84
5.50E-59
89
148
271014
271396
-
8
17552919
17553160
+
240
1.90E-141
91
384
280519
280802
+
8
18948868
18949067
+
267
2.50E-140
99
283
283016
283181
+
8
18949069
18949233
+
149
1.80E-75
98
165
221387
240706
+
8
18949069
18949233
+
267
4.90E-142
99
283
224277
246667
+
8
19063841
19064128
+
425
0.00E+00
98
465
224759
247315
+
8
19935470
19935669
+
141
0.00E+00
99
149
239863
277821
-
8
19935470
19935669
+
434
4.80E-244
99
446
241050
279937
+
8
20225884
20226001
+
115
9.20E-56
90
191
199757
199859
+
8
20225884
20226001
+
52
1.70E-27
88
104
185600
185759
-
8
22193033
22193202
+
131
7.30E-63
96
159
122378
122499
+
8
22193033
22193202
+
42
3.50E-45
83
130
229
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
122239
122371
-
8
22193211
22194855
+
101
4.60E-44
94
133
121411
121543
-
8
22193211
22194855
+
95
3.60E-40
93
135
125730
125875
+
8
23509473
23510031
+
90
5.00E-37
90
146
129682
129831
+
8
24166365
24166500
+
118
0
95
150
126952
127121
+
8
24607222
24607323
+
158
0
98
170
126952
127121
-
8
25214641
25214959
+
158
0
98
170
125848
126047
-
8
25280180
25280336
+
128
1.50E-60
91
200
125097
125299
+
8
25292005
25292136
+
191
0
99
203
125299
126943
+
8
25292131
25292295
+
1629
0
100
1645
125299
126943
-
8
25292803
25292982
+
1625
0
100
1645
40369
40469
-
9
548620
548801
+
93
1.00E-88
98
101
27943
28055
-
9
1274630
1274975
+
105
1.40E-88
98
113
32426
32594
+
9
1274630
1275077
+
153
0
98
169
32425
32594
+
9
1274977
1275077
+
158
0
98
170
16464
16638
-
9
1362226
1362334
+
135
1.20E-64
94
175
9468
9645
+
9
1476452
1476661
+
174
7.30E-86
99
178
30570
30772
+
9
1476661
1476978
+
191
0
99
203
31377
32416
+
9
1476977
1478907
+
966
0
98
1042
30772
32416
+
9
2208018
2208148
+
1633
0
100
1645
90776
90893
-
9
2208018
2208148
+
113
9.00E-58
99
117
110991
111166
-
9
4365823
4366030
+
135
3.00E-65
94
175
103995
104173
+
9
4620402
4620550
+
174
7.40E-86
99
178
70663
70796
-
9
4620570
4621813
+
133
6.00E-90
100
133
75518
75728
-
9
4621318
4621813
+
210
0
100
210
46758
47051
-
9
4621318
4621813
+
253
5.40E-138
97
293
56595
56890
+
9
4621821
4623347
+
295
3.40E-158
100
295
40471
40817
-
9
4621821
4623347
+
334
4.60E-184
99
346
70687
71563
+
9
4621821
4623347
+
660
0
94
880
54692
56623
-
9
4621976
4622153
+
1895
0
100
1931
485621
485810
+
9
4621976
4622153
+
149
1.90E-73
95
189
474581
474740
+
9
4622061
4622203
+
147
5.00E-140
98
159
487793
487948
-
9
4623361
4626493
+
103
2.00E-124
91
159
484184
484333
+
9
4623361
4625403
+
137
5.00E-140
98
149
460774
460905
+
9
4623361
4625403
+
123
7.50E-57
98
131
472882
472995
-
9
4637890
4641293
+
90
1.10E-78
95
114
230
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
460796
460905
-
9
4640305
4640421
+
93
8.50E-39
96
109
473014
473120
-
9
4641294
4643476
+
86
1.10E-78
95
106
427400
427561
-
9
4643474
4643799
+
157
4.60E-77
99
161
406321
406526
+
9
4643747
4645122
+
109
2.90E-77
88
213
427511
427970
+
9
4644913
4645051
+
439
4.70E-247
99
459
412862
413358
-
9
4645131
4645847
+
488
0
100
496
421500
422461
+
9
4645887
4646283
+
937
0
99
961
429743
430763
+
9
4649459
4650836
+
992
0
99
1020
430775
431807
+
9
4651014
4652038
+
1000
0
99
1032
436480
437538
+
9
4651078
4652038
+
1042
0
100
1058
428484
429743
+
9
4652047
4654152
+
1226
0
99
1262
431820
433248
+
9
4652047
4654152
+
1412
0
100
1428
411337
412864
-
9
4654162
4658081
+
1499
0
100
1527
422461
424567
+
9
4654162
4658081
+
2054
0
99
2106
408190
411324
-
9
4670141
4671399
+
3070
0
99
3134
433257
436471
+
9
4670141
4671399
+
3143
0
99
3215
404701
408106
-
9
4671409
4672428
+
3281
0
99
3405
424575
428490
+
9
4671409
4672428
+
3853
0
100
3921
379687
379818
+
9
4671416
4671570
+
123
5.30E-57
98
131
394088
394349
-
9
4671416
4671570
+
205
2.20E-109
95
261
391365
391673
-
9
4672408
4673438
+
284
1.10E-153
98
308
402189
402515
-
9
4672408
4673438
+
322
0
100
326
402518
404701
-
9
4673439
4674866
+
2155
0
100
2183
328365
328466
+
9
4673439
4674866
+
101
2.60E-42
100
101
346313
346474
-
9
4674876
4678090
+
157
1.20E-75
99
161
329908
330091
+
9
4674876
4678090
+
80
4.30E-69
86
188
338399
338796
+
9
4675491
4675609
+
385
0
99
397
346424
346883
+
9
4678102
4679158
+
439
9.40E-245
99
459
337644
338361
+
9
4678102
4679158
+
709
0
100
717
348656
349676
+
9
4679177
4679345
+
992
0
99
1020
340349
341374
+
9
5060088
5060222
+
1001
0
99
1025
349688
350720
+
9
5960801
5960959
+
1000
0
99
1032
355393
356451
+
9
6793370
6793517
+
1042
0
100
1058
347397
348656
+
9
6793524
6793677
+
1226
0
99
1262
336260
337636
+
9
7120468
7120992
+
1341
0
99
1377
338793
340172
+
9
7124709
7125233
+
1355
0
100
1379
231
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
350733
352161
+
9
7125244
7125408
+
1412
0
100
1428
341374
343480
+
9
7337715
7338018
+
2054
0
99
2106
352170
355384
+
9
9031740
9031880
+
3143
0
99
3215
343488
347403
+
9
9086696
9086813
+
3853
0
100
3921
310298
310792
-
9
10957908
10958033
+
366
3.10E-258
94
494
286235
286633
+
9
10958039
10958527
+
386
3.80E-214
99
398
293891
294192
-
9
11531119
11531401
+
220
1.10E-112
93
304
293899
294192
-
9
11892412
11893450
+
229
4.10E-119
95
293
293899
294192
-
9
11892412
11893450
+
229
9.30E-121
95
293
293899
294192
-
9
11893460
11893628
+
229
1.00E-121
95
293
293910
294192
+
9
11893460
11893628
+
196
1.00E-100
92
284
308836
309112
+
9
11896773
11896954
+
238
4.70E-129
96
278
297335
297554
+
9
12296659
12296951
+
175
1.60E-91
95
219
296101
296283
+
9
12582269
12582439
+
126
8.20E-99
92
182
293891
294044
-
9
12582269
12582439
+
110
6.10E-101
93
154
294044
294192
-
9
12582446
12582634
+
108
6.10E-101
93
148
294583
294722
+
9
12582446
12582634
+
139
8.90E-68
100
139
293974
294109
-
9
12651406
12651698
+
103
1.20E-98
94
135
310788
310914
-
9
12676701
12676801
+
118
3.10E-258
98
126
249743
249902
+
9
12894921
12895213
+
132
1.40E-63
96
160
253546
253901
-
9
13861231
13861585
+
281
3.50E-148
95
357
257162
257295
-
9
14452285
14452487
+
129
1.40E-60
99
133
266019
266219
+
9
14452285
14452487
+
180
2.70E-89
98
200
269019
269162
-
9
14452495
14454139
+
135
0
99
143
278366
280409
-
9
14452495
14454139
+
1995
0
99
2043
280422
281949
-
9
14454148
14454317
+
1499
0
100
1527
281947
282443
-
9
14454148
14454317
+
488
0
100
496
219234
238160
-
9
16299526
16299684
+
1995
0
99
2043
221290
241756
-
9
16299526
16299684
+
1499
0
100
1527
222815
244523
-
9
16299688
16299792
+
1220
0
100
1244
224078
245954
-
9
16299887
16299999
+
145
0
99
149
234240
266294
-
9
16299887
16299999
+
141
0
96
165
234404
266979
-
9
16299999
16300293
+
381
0
93
525
234920
268015
-
9
16300464
16300569
+
338
0
91
530
235534
268847
-
9
16300464
16300569
+
130
5.70E-60
100
130
178787
178905
+
9
16300603
16300714
+
102
8.70E-46
97
118
232
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
184733
184852
-
9
16300603
16300714
+
95
3.90E-52
95
119
178787
178928
+
9
16300784
16301242
+
97
6.90E-43
92
141
164692
164847
-
9
16300784
16301242
+
103
4.80E-113
91
159
183013
183182
+
9
16301243
16301375
+
161
6.20E-82
99
169
162520
162709
+
9
16301375
16301523
+
149
2.60E-70
95
189
173157
173475
-
9
16301375
16301523
+
314
1.40E-171
100
318
122680
122784
-
9
16301525
16301831
+
93
6.00E-91
97
105
149913
150018
-
9
16301831
16301991
+
86
2.00E-77
95
106
122470
122582
-
9
16301831
16301991
+
105
6.00E-91
98
113
149781
149893
-
9
16301992
16302121
+
90
2.00E-77
95
114
161083
161231
+
9
16483667
16484546
+
137
1.90E-141
98
149
151480
151638
+
9
18579797
18579929
-
147
1.90E-141
98
159
126953
127121
+
9
18579930
18580128
-
153
0
98
169
126952
127121
+
9
18580129
18580405
-
158
0
98
170
125097
125299
+
9
19940997
19941257
+
191
0
99
203
134896
135343
-
9
19941259
19941551
+
424
9.60E-235
99
448
125904
126943
+
9
19941910
19942128
+
966
0
98
1042
125299
126943
+
9
22402627
22403023
+
1633
0
100
1645
26216
26324
+
10
2103516
2103632
+
85
7.70E-98
95
109
30951
31063
+
10
2103516
2103632
+
109
2.00E-95
99
113
8876
9002
-
10
2734914
2736175
+
116
4.00E-54
98
128
30524
30660
+
10
2734914
2736175
+
113
0
96
137
29376
29514
+
10
2736175
2738436
+
119
6.90E-55
96
139
35155
35304
-
10
2736175
2738436
+
118
0
95
150
27905
28055
+
10
2995209
2995365
+
131
0
97
151
26330
26486
+
10
4268060
4268256
+
125
7.70E-98
95
157
32425
32594
+
10
5321122
5321227
+
158
0
98
170
32425
32594
-
10
5368691
5368792
+
158
0
98
170
32425
32594
-
10
7656851
7656973
+
146
0
96
170
30772
30960
-
10
7656851
7656973
+
189
5.70E-111
100
189
30570
30772
+
10
7656972
7657079
+
191
0
99
203
30570
30772
-
10
7656972
7657079
+
191
0
99
203
30570
30772
-
10
7657164
7657397
+
183
0
98
203
27609
27844
+
10
7657530
7657702
+
216
0
98
236
25834
26077
+
10
7657530
7657702
+
214
3.10E-211
97
246
233
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
25585
25838
+
10
7657702
7657818
+
185
3.10E-211
93
261
25585
25838
+
10
7657818
7657926
+
181
0
92
261
5237
5519
+
10
7658013
7658140
+
271
1.00E-148
99
283
28153
28583
+
10
7658013
7658140
+
343
0
95
435
25834
26324
+
10
7658136
7658248
+
443
0
97
495
30772
31768
-
10
7658136
7658248
+
965
0
99
997
31135
32414
-
10
7658420
7658574
+
1185
0
98
1281
26328
27611
+
10
7659165
7659264
+
1198
0
98
1290
28718
30249
+
10
7659165
7659264
+
1428
0
98
1536
30772
32416
+
10
7659165
7659264
+
1617
0
100
1645
30772
32416
-
10
7659860
7659968
+
1593
0
99
1645
114732
114832
+
10
7659860
7659968
+
100
4.10E-44
100
100
89870
89973
+
10
7660202
7660336
+
91
2.40E-37
97
103
120113
120217
+
10
7660202
7660336
+
104
5.30E-47
100
104
85361
85468
+
10
7673800
7673961
+
95
2.40E-61
97
107
120743
120852
+
10
7673960
7674197
+
85
3.90E-99
95
109
103403
103530
-
10
7674260
7674363
+
116
4.00E-54
98
128
120857
121014
+
10
7674260
7674363
+
125
3.90E-99
95
157
120361
120605
+
10
7674362
7674550
+
214
2.60E-213
97
246
120112
120366
+
10
7674362
7674550
+
185
2.60E-213
93
261
120112
120366
+
10
7674574
7674680
+
181
0
92
261
99764
100047
+
10
7674764
7674871
+
271
4.80E-144
99
283
120361
120852
+
10
7674982
7675094
+
443
0
97
495
120855
121411
+
10
7674982
7675094
+
528
0
99
556
71529
71635
+
10
7675263
7675370
+
74
2.50E-31
92
106
66972
67089
+
10
7675263
7675370
+
81
1.20E-62
92
117
42400
42535
-
10
7675506
7675669
+
123
4.90E-56
98
135
79710
79869
+
10
7675847
7675953
+
155
8.60E-126
99
159
65192
65355
-
10
7676128
7676236
+
156
4.50E-76
99
164
69832
70025
-
10
7676261
7676360
+
193
3.10E-102
100
193
62020
62388
+
10
7676387
7676496
+
364
2.00E-244
100
368
459974
462232
-
10
9675237
9675381
+
2094
0
98
2262
462319
463583
-
10
9675237
9675381
+
1136
0
97
1264
446376
446788
+
10
9675392
9675540
+
342
0
95
418
446982
447186
+
10
9675392
9675540
+
160
0
95
204
447307
447468
-
10
9675550
9675966
+
133
2.90E-65
96
161
234
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
463749
463906
+
10
9675550
9675966
+
57
3.20E-89
84
161
463749
463906
-
10
9675974
9676117
+
53
1.00E-56
83
161
463749
463906
-
10
9675974
9676117
+
53
1.90E-90
83
161
464209
464356
-
10
9676173
9676376
+
50
1.90E-90
83
154
464209
464356
+
10
9676173
9676376
+
52
3.20E-89
84
152
446224
446367
+
10
9676366
9676526
+
109
0
93
149
446071
446216
+
10
9676366
9676526
+
129
0
97
145
446797
446941
+
10
10281200
10281356
+
132
0
98
144
485470
485605
+
10
10281200
10281356
+
123
5.70E-56
98
135
463485
463594
+
10
10281515
10281622
+
48
3.20E-89
86
112
463485
463594
-
10
10281515
10281622
+
48
1.00E-56
86
112
463485
463594
-
10
10295770
10295972
+
48
1.90E-90
86
112
478139
478247
+
10
10295770
10295972
+
108
2.60E-96
100
108
465791
465899
+
10
10295980
10297624
+
100
2.60E-96
98
108
471447
471547
-
10
10295980
10297624
+
84
1.20E-68
96
100
427101
427205
+
10
10297633
10297802
+
100
1.60E-115
99
104
437622
437731
+
10
10297633
10297802
+
105
2.00E-118
99
109
438104
438218
+
10
10315749
10316053
+
110
2.40E-121
99
114
414344
414463
+
10
10316361
10316519
+
80
0
92
120
423415
423538
-
10
10316881
10317248
+
115
4.10E-53
98
123
440892
441018
+
10
10316881
10317571
+
106
0
96
126
440892
441018
+
10
10317568
10318476
+
106
0
96
126
442305
442427
+
10
10318486
10318756
+
81
0
91
129
442305
442427
+
10
10318818
10320870
+
81
0
91
129
440107
440237
+
10
10320879
10322546
+
94
0
93
130
440107
440237
+
10
10322531
10323430
+
94
0
93
130
414344
414482
-
10
10323435
10323595
+
83
8.80E-191
90
139
436304
436471
-
10
10323540
10323705
+
92
8.80E-191
89
168
443246
443419
-
10
10323540
10323705
+
161
7.10E-79
98
173
438838
439040
+
10
10326520
10326693
+
142
0
93
202
407127
407330
+
10
10327823
10327932
+
187
0
98
203
407127
407330
+
10
10329920
10330019
+
183
0
98
203
438838
439043
+
10
10330018
10330216
+
145
0
93
205
438442
438644
+
10
10330231
10330429
+
109
0
88
209
438442
438644
+
10
10332869
10333657
+
109
0
88
209
440518
440774
+
10
10333660
10333859
+
206
0
95
258
235
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
440518
440774
+
10
10341867
10342071
+
206
0
95
258
439318
439682
+
10
10341867
10342071
+
224
0
90
368
439318
439863
+
10
10342224
10342424
+
293
0
88
549
406345
407134
+
10
10342224
10342424
+
696
0
97
790
406344
407134
+
10
10342769
10343129
+
697
0
97
791
441345
442306
+
10
10342769
10343129
+
841
0
97
961
441345
442306
+
10
10344884
10345013
+
833
0
97
961
441028
442265
+
10
10344884
10345013
+
1058
0
96
1238
441028
442265
+
10
10345224
10345480
+
1050
0
96
1238
384704
384812
+
10
10345224
10345480
+
100
1.20E-44
98
108
382398
382507
-
10
10345543
10345668
+
48
1.30E-56
86
112
382398
382507
-
10
10345543
10345668
+
48
4.40E-92
86
112
382398
382507
+
10
10345669
10346900
+
48
9.80E-91
86
112
386453
386587
+
10
10345669
10346900
+
134
2.10E-62
100
134
365710
365854
+
10
10345981
10346936
+
132
0
98
144
364984
365129
+
10
10345981
10346936
+
129
0
97
145
365137
365280
+
10
10346942
10347069
+
109
0
93
149
383122
383269
+
10
10346942
10347069
+
52
9.80E-91
84
152
383122
383269
-
10
10348437
10348696
+
50
4.40E-92
83
154
366220
366381
-
10
10348437
10348696
+
133
1.90E-62
96
161
382662
382819
+
10
10348704
10349197
+
57
9.80E-91
84
161
382662
382819
-
10
10348704
10349197
+
53
1.30E-56
83
161
382662
382819
-
10
10349210
10350497
+
53
4.40E-92
83
161
365895
366099
+
10
10349210
10349765
+
160
0
95
204
395695
395957
-
10
10349766
10350497
+
154
4.20E-76
89
266
390611
390901
+
10
10350502
10350737
+
209
5.60E-106
93
293
390599
390901
+
10
10350502
10350737
+
241
0
95
305
365289
365701
+
10
10351008
10351158
+
342
0
95
418
395692
396401
+
10
10351008
10351158
+
673
0
99
709
381232
382496
-
10
10351266
10351695
+
1136
0
97
1264
378887
381145
-
10
10351266
10351695
+
2094
0
98
2262
346014
346118
+
10
10351857
10353392
+
100
3.40E-167
99
104
356535
356644
+
10
10351857
10353392
+
105
1.60E-85
99
109
357017
357131
+
10
10353647
10353812
+
110
1.80E-88
99
114
342328
342451
-
10
10353676
10353812
+
115
6.00E-52
98
123
359805
359931
+
10
10362072
10362221
+
106
0
96
126
236
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
359805
359931
+
10
10362072
10362221
+
106
0
96
126
361218
361340
+
10
10369802
10370510
+
81
0
91
129
361218
361340
+
10
10375226
10375415
+
81
0
91
129
359020
359150
+
10
10378575
10378744
+
94
0
93
130
359020
359150
+
10
10378575
10378744
+
94
0
93
130
338793
338955
+
10
10378753
10380397
+
158
3.40E-167
99
162
355217
355384
-
10
10378753
10380397
+
92
4.00E-144
89
168
362159
362332
-
10
10380405
10380607
+
161
2.30E-81
98
173
329900
330091
-
10
10380405
10380607
+
92
4.00E-144
87
196
339159
339357
-
10
10389945
10390082
+
150
2.10E-75
94
198
357751
357953
+
10
10389945
10390082
+
142
0
93
202
357751
357956
+
10
10394754
10394861
+
145
0
93
205
357355
357557
+
10
10394754
10394861
+
109
0
88
209
357355
357557
+
10
10395020
10395176
+
109
0
88
209
359431
359687
+
10
10395020
10395176
+
206
0
95
258
359431
359687
+
10
10395496
10395642
+
206
0
95
258
358231
358595
+
10
10395496
10395642
+
224
0
90
368
325463
325848
-
10
11280146
11280253
+
329
2.80E-183
96
385
358231
358776
+
10
11280146
11280253
+
293
0
88
549
329444
330064
+
10
11280267
11280422
+
608
0
100
620
360258
361219
+
10
11280267
11280422
+
841
0
97
961
360258
361219
+
10
12379949
12380231
-
833
0
97
961
359941
361178
+
10
12379949
12380231
-
1058
0
96
1238
359941
361178
+
10
14027516
14027649
+
1050
0
96
1238
290625
292679
-
10
14027648
14027751
+
1994
0
99
2054
288949
290617
-
10
14027751
14027907
+
1636
0
100
1668
292957
293866
-
10
14028154
14028385
+
885
0
99
909
288083
288990
-
10
14028384
14028499
+
839
0
98
907
293896
294587
-
10
14028700
14028906
+
671
0
99
691
290625
291224
+
10
14028907
14029107
+
560
0
98
600
290324
290617
+
10
14029207
14029826
+
282
0
99
294
292677
292948
-
10
14029870
14029969
+
267
0
100
271
318206
318413
-
10
14029970
14030072
+
207
4.90E-108
100
207
297010
297204
-
10
15775898
15776190
+
154
2.90E-96
94
198
317357
317546
-
10
15786639
15786902
+
146
2.90E-69
94
190
287933
288094
-
10
15973565
15973664
+
161
0
100
161
237
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
298570
298728
-
10
16659735
16659932
-
150
3.50E-71
99
158
283423
283561
-
10
18089538
18089679
+
83
0
90
139
283423
283542
+
10
18089686
18089901
+
80
1.80E-86
92
120
243164
243266
+
10
18409802
18409938
-
86
1.80E-38
96
102
246083
246260
+
10
18409802
18409938
-
94
1.50E-98
88
178
247260
247370
+
10
18841699
18841833
+
47
1.50E-31
86
111
247260
247370
+
10
18841699
18841833
+
47
1.50E-98
86
111
250729
250961
+
10
19212895
19213087
+
221
7.00E-116
99
233
268296
268494
-
10
19563117
19563497
+
143
1.00E-163
93
199
268318
268494
-
10
19946322
19946440
-
129
7.70E-181
93
177
268508
268707
-
10
19946322
19946440
-
171
1.00E-163
96
199
268508
268760
-
10
19951124
19951231
-
220
7.70E-181
97
252
268660
268760
-
10
19951124
19951231
-
96
8.10E-120
99
100
281022
281139
+
10
19951390
19951546
-
106
9.60E-49
97
118
203140
204040
+
10
19951390
19951546
-
75
5.00E-40
92
111
205672
209102
+
10
19951869
19952015
-
105
1.30E-100
99
109
207284
212317
+
10
19951869
19952015
-
84
8.40E-117
96
100
221890
241546
+
10
19954778
19955023
-
106
2.60E-48
97
118
226989
251737
+
10
19954778
19955023
-
110
2.20E-105
100
110
228233
254222
+
10
19955031
19955290
-
107
8.40E-117
100
107
230973
259749
+
10
19955031
19955290
-
78
7.20E-33
87
158
235091
267959
-
10
19956660
19956787
-
84
3.10E-35
91
128
236636
271122
+
10
19956660
19956787
-
193
6.40E-101
99
201
238228
274321
-
10
19956793
19957748
-
139
1.40E-120
91
219
238456
274701
-
10
19956793
19957748
-
106
1.40E-120
94
142
240452
278661
-
10
19956829
19958060
-
100
2.10E-58
98
108
180234
180334
+
10
19956829
19958060
-
100
5.50E-42
100
100
201587
201686
+
10
19958061
19958186
-
85
1.60E-266
96
101
192289
192398
+
10
19958061
19958186
-
101
3.30E-190
98
109
190681
190797
-
10
19958249
19958505
-
112
5.60E-50
99
116
162369
162504
+
10
19958249
19958505
-
123
5.20E-57
98
135
177781
177936
-
10
19958715
19958844
-
128
1.30E-58
96
156
171974
172208
+
10
19958715
19958844
-
198
1.60E-266
96
234
183015
183253
+
10
19960462
19961003
-
230
1.60E-266
99
238
148346
148445
-
10
19960462
19961003
-
84
1.10E-214
96
100
155038
155145
+
10
19961345
19961548
-
108
4.30E-105
100
108
238
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
125478
125590
+
10
19961345
19961548
-
109
4.30E-105
99
113
136927
137061
-
10
19961701
19961905
-
123
1.10E-214
98
135
123903
124041
+
10
19961701
19961905
-
119
3.80E-58
96
139
129682
129831
-
10
19969912
19970111
-
118
0
95
150
122432
122582
+
10
19970114
19970903
-
131
0
97
151
125022
125187
+
10
19973364
19973540
-
142
0
96
166
126952
127121
+
10
19973555
19973806
-
158
0
98
170
126952
127121
-
10
19975804
19975913
-
158
0
98
170
126952
127121
-
10
20827996
20828165
+
146
0
96
170
125299
125487
-
10
20827996
20828165
+
189
1.10E-214
100
189
125097
125299
-
10
20828176
20829454
+
191
0
99
203
125097
125299
+
10
20828176
20829454
+
191
0
99
203
125097
125299
-
10
21698186
21698312
+
183
0
98
203
122136
122371
+
10
22223582
22223770
+
216
0
98
236
122680
123110
+
10
22223773
22223883
+
343
0
95
435
121411
122138
+
10
22262811
22263807
+
670
0
98
734
125299
126295
-
10
22262811
22263807
+
965
0
99
997
125662
126941
-
10
22263815
22264017
+
1185
0
98
1281
123245
124776
+
10
22263815
22264017
+
1428
0
98
1536
125299
126943
+
10
22264916
22265209
+
1617
0
100
1645
125299
126943
-
10
22265218
22265816
+
1593
0
99
1645
26151
26267
+
11
19667
19831
+
113
2.00E-111
99
117
36722
36850
+
11
19667
19831
+
117
2.00E-111
98
129
29224
29353
-
11
3489368
3489471
+
90
0
92
130
11541
11677
-
11
3673563
3673810
+
137
1.50E-154
100
137
30524
30660
+
11
3816083
3816295
+
102
0
93
138
8406
8545
-
11
4336140
4336370
+
136
1.50E-154
99
140
27905
28055
+
11
4837106
4837253
-
107
0
93
151
9977
10133
+
11
5944354
5944514
+
141
7.30E-69
97
157
34099
34261
-
11
5944354
5944514
+
128
3.40E-60
95
164
13795
13979
+
11
6102691
6103052
+
181
9.30E-93
99
185
29999
30252
+
11
6102691
6103052
+
231
0
98
255
35066
35426
-
11
6114149
6114269
+
310
5.80E-172
96
362
28153
28707
+
11
7133062
7133262
-
369
0
91
561
29367
29951
-
11
8268200
8268353
+
453
0
94
593
239
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
28738
29327
+
11
8404343
8404558
+
449
0
94
593
29323
29991
+
11
8404567
8404757
+
490
0
93
674
29582
30253
-
11
8404759
8404961
+
521
0
94
681
120678
120795
+
11
8405090
8405245
+
113
2.90E-51
99
117
92018
92140
-
11
9138546
9138653
+
110
3.30E-50
98
122
100738
100871
-
11
9138546
9138653
+
105
1.30E-47
95
133
90915
91048
+
11
9446009
9446126
+
94
2.00E-40
93
134
106068
106205
-
11
10198893
10199043
+
137
1.60E-154
100
137
102933
103073
-
11
10199056
10199284
+
136
1.60E-154
99
140
90605
90756
-
11
10199056
10199284
+
147
1.40E-70
99
151
104504
104661
+
11
10835676
10835839
+
141
6.60E-66
97
157
115183
115342
+
11
10835839
10835955
+
83
3.00E-34
88
159
108322
108507
+
11
10835839
10835955
+
181
9.40E-93
99
185
90186
90387
-
11
10836048
10836156
+
110
1.30E-90
89
202
46463
46581
-
11
10836405
10836563
+
82
5.00E-34
92
118
48896
49025
+
11
10836563
10836691
+
97
2.00E-41
94
129
49681
49835
+
11
10836563
10836691
+
150
2.30E-71
99
154
460565
460765
+
11
10836689
10836838
+
94
2.20E-38
86
206
487425
487590
+
11
10836840
10836946
+
145
3.70E-71
97
165
447295
447457
+
11
11462762
11462863
-
99
2.80E-46
90
163
480993
481120
+
11
11463698
11463820
-
123
2.80E-58
99
127
459284
459395
+
11
11874119
11874221
-
95
1.40E-39
96
111
486469
486578
+
11
11874403
11874504
-
101
2.30E-47
98
109
458802
458910
-
11
11876315
11876454
-
96
7.20E-148
97
108
456154
456260
+
11
11876315
11876454
-
102
1.40E-61
99
106
464292
464398
-
11
11876577
11876682
-
102
2.90E-44
99
106
450231
450336
-
11
11876577
11876682
-
98
5.60E-43
98
106
410895
410999
-
11
11876877
11876980
-
96
8.90E-142
98
104
439754
439863
+
11
11876877
11876980
-
85
3.80E-65
95
109
433761
433873
-
11
11876877
11876980
-
104
8.90E-142
98
112
433435
433581
+
11
11878147
11878295
-
138
4.30E-67
99
146
427991
428140
+
11
11878147
11878295
-
149
3.60E-150
100
149
408458
408608
+
11
11878292
11878394
-
142
6.50E-69
99
150
439277
439439
+
11
11879095
11879231
-
150
3.90E-73
98
162
441766
441995
+
11
11879095
11879231
-
173
2.20E-88
94
229
439390
439653
-
11
11879516
11879627
-
126
9.60E-57
87
266
240
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
396856
396958
-
11
11879516
11879627
-
102
1.40E-122
100
102
375067
375173
+
11
11879624
11879750
-
102
1.30E-100
99
106
383205
383311
-
11
11879752
11879860
-
102
6.90E-46
99
106
369144
369249
-
11
11879752
11879860
-
98
1.00E-43
98
106
377715
377823
-
11
11879860
11879967
-
96
3.20E-148
97
108
366208
366370
+
11
11879860
11879967
-
99
3.80E-46
90
163
386980
387174
+
11
12437397
12437502
-
186
1.80E-93
99
194
358667
358776
+
11
12437397
12437502
-
85
1.70E-64
95
109
352674
352786
-
11
12543281
12543437
-
104
1.30E-100
98
112
329401
329513
-
11
12543281
12543437
-
100
2.00E-45
97
112
335847
335984
+
11
12857760
12857892
+
129
8.10E-62
99
137
352348
352494
+
11
13074155
13074260
+
138
4.30E-67
99
146
346904
347053
+
11
13074155
13074260
+
149
3.60E-150
100
149
338961
339120
-
11
14057236
14057455
+
103
6.60E-45
91
159
358190
358352
+
11
14057456
14057649
+
150
3.90E-73
98
162
350736
350924
+
11
14057692
14057799
+
105
1.10E-46
89
193
360679
360908
+
11
14057795
14057905
+
173
2.20E-88
94
229
358303
358566
-
11
14258021
14258134
-
126
2.50E-57
87
266
293891
294153
+
11
14813980
14814090
-
143
1.90E-72
88
267
291138
291369
+
11
16034382
16034639
+
199
3.90E-103
97
231
322716
322898
-
11
16428280
16428624
+
170
1.60E-88
98
182
292407
292566
-
11
17130263
17130389
+
155
1.20E-74
99
159
289640
289787
+
11
17130263
17130389
+
136
4.70E-65
98
148
308414
308541
-
11
17130484
17130668
+
127
1.70E-103
100
127
312925
313043
+
11
17130484
17130668
+
118
3.00E-55
100
118
312170
312278
-
11
17403197
17403452
+
88
6.50E-73
95
108
242827
242936
-
11
17403197
17403452
+
109
6.40E-49
100
109
244869
245033
+
11
17792914
17793070
+
156
1.30E-166
99
164
249068
249175
+
11
17916842
17916997
+
107
1.30E-166
100
107
249371
249474
+
11
18852064
18852744
+
103
1.30E-46
100
103
262001
262346
+
11
18852064
18852744
+
329
1.70E-180
99
345
279980
280084
-
11
18852368
18852960
+
96
1.80E-71
98
104
282445
282597
+
11
18852368
18852960
+
101
7.30E-45
91
157
212096
221950
-
11
18852974
18853103
+
77
1.70E-59
93
109
220848
239449
-
11
18852974
18853103
+
96
1.10E-107
98
104
223137
244023
-
11
18888559
18888708
+
38
9.10E-44
84
102
241
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
223228
244228
-
11
18888559
18888708
+
67
9.10E-44
89
123
231948
261688
+
11
18888816
18889366
+
88
8.40E-44
90
144
232365
262599
-
11
18888816
18889366
+
212
1.10E-109
99
220
234684
267263
-
11
18889388
18889978
+
184
3.20E-183
94
248
235071
268008
+
11
18889388
18889978
+
132
6.80E-66
90
220
239943
277643
+
11
18895107
18895774
+
96
4.40E-43
97
108
163368
163477
+
11
18895107
18895774
+
101
1.10E-99
98
109
172710
172831
-
11
18895775
18896029
+
98
6.40E-42
95
122
164324
164489
+
11
18895775
18896028
+
145
7.50E-72
97
165
198472
198642
-
11
18896282
18896448
+
146
3.10E-74
96
170
195909
196122
+
11
18896311
18896448
+
201
5.70E-102
99
213
126726
126829
-
11
19046307
19046488
+
96
6.30E-43
98
104
157892
158018
+
11
19222782
19222949
+
123
1.60E-60
99
127
158687
158812
+
11
19851498
19851606
+
67
2.40E-25
88
127
131249
131377
+
11
19851606
19851726
+
117
8.10E-52
98
129
123751
123880
-
11
21710175
21710314
+
90
0
92
130
122432
122582
+
11
22835381
22835542
+
107
0
93
151
128626
128788
-
11
22835381
22835542
+
128
1.50E-59
95
164
125022
125187
+
11
22835543
22835678
+
131
0
95
167
124526
124778
+
11
22928569
22928701
+
230
0
98
254
129593
129953
-
11
23088709
23088854
+
310
3.50E-166
96
362
122680
123234
+
11
23088709
23088854
+
369
0
91
561
123894
124478
-
11
24724410
24724571
+
453
0
94
593
123265
123854
+
11
24724410
24724571
+
449
0
94
593
123850
124518
+
11
26294483
26294611
-
490
0
93
674
124109
124780
-
11
27218219
27218340
-
521
0
94
681
33397
33497
-
12
18074
18238
+
101
0
100
101
5608
5709
-
12
18074
18238
+
98
0
99
102
549
651
-
12
163262
163483
+
103
1.30E-48
100
103
1274
1382
-
12
163701
163807
+
105
0
99
109
24860
24969
+
12
192584
192688
-
106
0
99
110
13301
13411
+
12
2800596
2800718
-
103
0
98
111
35224
35335
+
12
4566461
4566587
-
108
2.30E-227
99
112
2459
2574
-
12
4566461
4566587
-
112
0
99
116
6938
7054
+
12
4566588
4566711
-
117
0
100
117
242
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
18923
19038
+
12
4566712
4566873
-
97
6.70E-82
96
117
18923
19038
-
12
4566873
4566993
-
97
6.10E-51
96
117
18923
19038
-
12
4676025
4676135
-
97
0
96
117
20667
20784
-
12
4676197
4676353
-
114
0
99
118
31500
31626
+
12
4676552
4676755
-
123
0
99
127
12416
12542
+
12
4676552
4676755
-
119
1.60E-55
98
127
30574
30701
-
12
4676756
4676876
-
105
4.40E-45
95
129
13009
13138
-
12
4676877
4676996
-
126
0
99
130
7413
7543
-
12
4677063
4677169
-
127
0
99
131
5862
5996
+
12
4677360
4677501
-
135
3.50E-226
100
135
34526
34664
+
12
4677360
4677497
-
135
9.10E-280
99
139
30524
30662
+
12
4677544
4677698
-
103
1.80E-59
94
139
33424
33563
-
12
4677544
4677698
-
136
2.60E-149
99
140
1118
1259
+
12
4677852
4678109
-
142
7.60E-146
100
142
5229
5371
+
12
4678178
4678415
-
140
6.00E-281
99
144
12542
12688
-
12
4678178
4678415
-
143
0
99
147
35155
35304
+
12
4678416
4678593
-
118
1.70E-86
95
150
5698
5848
-
12
4678711
4678855
-
151
0
100
151
27905
28055
-
12
4678854
4678962
-
139
0
98
151
921
1075
+
12
4679200
4679301
-
151
7.60E-146
99
155
13577
13732
+
12
4679301
4679436
-
156
9.00E-279
100
156
468
625
-
12
4751402
4751537
-
158
0
100
158
31339
31499
-
12
5607904
5608114
-
157
0
99
161
10091
10258
+
12
5607904
5608114
-
168
0
100
168
32426
32594
+
12
5608120
5608247
-
145
0
96
169
29592
29768
-
12
5608120
5608247
-
173
0
99
177
9468
9645
-
12
5609615
5609874
-
170
0
99
178
142
331
+
12
5609615
5609874
-
186
0
99
190
5783
5979
-
12
5609882
5610375
-
197
0
100
197
7334
7541
+
12
5609882
5610375
-
208
6.00E-281
100
208
6582
6790
+
12
5610388
5611675
-
205
0
100
209
6079
6287
+
12
5610388
5610943
-
165
4.80E-80
95
209
16913
17131
+
12
5610944
5611675
-
211
9.10E-280
99
219
1560
1784
+
12
5611680
5611915
-
166
0
93
226
7840
8073
+
12
5611680
5611915
-
230
0
100
234
27609
27844
-
12
5612186
5612336
-
208
0
97
236
243
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
34222
34459
+
12
5612186
5612336
-
230
2.30E-227
99
238
8718
8960
-
12
5612445
5612874
-
235
0
99
243
2154
2413
+
12
5612451
5612874
-
201
0
94
261
25585
25838
-
12
5613046
5614572
-
185
0
93
261
25585
25838
-
12
5613046
5614572
-
181
0
92
261
2356
2617
-
12
5633225
5633370
-
258
0
100
262
39928
40203
-
12
5633225
5633370
-
272
0
100
276
2757
3052
+
12
5633988
5634091
-
292
0
100
296
10284
10603
-
12
5633988
5634091
-
320
0
100
320
18053
18382
+
12
5640469
5640618
-
326
0
100
330
20448
20793
+
12
5640469
5640618
-
330
0
99
346
1797
2146
+
12
5651340
5652048
+
247
0
93
351
40090
40470
-
12
5656834
5657023
+
381
0
100
381
25447
25852
-
12
5865190
5865298
+
394
0
99
406
28159
28583
-
12
6209831
6209956
-
329
0
94
429
29456
29926
-
12
6209831
6209956
-
463
0
100
471
25834
26324
-
12
7595063
7595232
+
431
0
97
495
25834
26324
-
12
7595063
7595232
+
423
0
96
495
31289
31898
-
12
7595232
7595376
+
578
0
99
610
31289
31898
-
12
8525680
8526008
+
578
0
99
610
35847
36461
-
12
8525680
8526008
+
579
0
99
615
6111
6733
-
12
8526021
8526979
+
619
0
100
623
6728
7395
-
12
8526021
8526978
+
660
0
100
668
26328
27080
-
12
8527115
8528408
+
701
0
98
753
18391
19208
+
12
8527115
8528408
+
775
0
99
819
31374
32416
+
12
8528524
8533263
+
961
0
98
1045
19217
20438
+
12
8528524
8533263
+
1166
0
99
1222
20448
21671
+
12
8536303
8536576
+
1148
0
98
1224
6111
7395
-
12
8536577
8536762
+
1285
0
100
1285
26328
27611
-
12
8536771
8538186
+
1179
0
98
1291
28727
30249
-
12
8538189
8538536
+
1399
0
98
1527
21686
23237
+
12
8538538
8538799
+
1477
0
99
1553
22103
26839
-
12
8538964
8539204
+
4469
0
99
4745
100135
100237
-
12
8539230
8539559
+
98
0
99
102
95076
95179
-
12
8539230
8539559
+
103
2.40E-178
100
103
93302
93405
+
12
8539568
8540385
+
99
1.20E-262
99
103
244
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
91079
91184
-
12
8539568
8540385
+
93
0
97
105
95801
95910
-
12
8540099
8540215
+
105
0
99
109
81090
81199
-
12
8540402
8541622
+
105
0
99
109
119387
119497
+
12
8540402
8541622
+
106
0
99
110
107828
107939
+
12
8541635
8542857
+
103
0
98
111
91036
91148
+
12
8541635
8542857
+
112
1.0e-314
100
112
92467
92579
-
12
8542873
8544422
+
108
0
99
112
96986
97102
-
12
8542873
8544422
+
112
0
99
116
101465
101582
+
12
8544452
8544663
+
117
1.0e-313
100
117
113450
113566
+
12
8544659
8546207
+
97
0
96
117
113450
113566
-
12
8546270
8547026
+
97
4.30E-50
96
117
113450
113566
-
12
8547036
8547252
+
97
2.10E-146
96
117
115194
115312
-
12
8547798
8547941
+
114
0
99
118
81411
81532
-
12
8547798
8547941
+
117
0
99
121
106943
107070
+
12
8553845
8555601
+
119
2.40E-54
98
127
107536
107666
-
12
8553845
8555847
+
126
2.40E-205
99
130
93649
93779
-
12
8555294
8555511
+
126
0
99
130
111908
112038
+
12
8555874
8556002
+
114
6.30E-53
97
130
101940
102071
-
12
8555874
8556002
+
127
0
99
131
100389
100524
+
12
8556008
8557884
+
135
1.10E-225
100
135
95649
95787
+
12
8557143
8557884
+
138
6.90E-143
100
138
89177
89317
-
12
8557143
8557884
+
132
0
99
140
94261
94404
-
12
8557893
8558444
+
143
0
100
143
90508
90651
+
12
8557893
8558444
+
123
4.40E-55
97
143
99756
99899
+
12
8557893
8558444
+
140
1.0e-314
99
144
107069
107216
-
12
8558487
8559333
+
143
0
99
147
91504
91654
-
12
8559333
8559913
+
142
0
99
150
100225
100376
-
12
8560014
8560486
+
151
0
100
151
95448
95603
+
12
8690546
8690687
-
151
6.90E-143
99
155
108104
108260
+
12
8690546
8690687
-
156
9.60E-250
100
156
94995
95153
-
12
8738516
8738809
-
158
0
100
158
104618
104786
+
12
9361394
9361502
-
168
0
100
168
87258
87429
-
12
11282869
11282998
-
151
0
97
171
103995
104173
-
12
11282869
11282998
-
170
2.10E-146
99
178
94669
94859
+
12
11283209
11283465
-
186
1.0e-313
99
190
81800
81991
+
12
11283209
11283465
-
171
1.10E-128
97
191
245
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
100310
100507
-
12
11283528
11283653
-
197
0
100
197
101861
102069
+
12
11283528
11283653
-
208
1.0e-314
100
208
101109
101318
+
12
11283654
11284885
-
205
0
100
209
100606
100815
+
12
11283654
11284885
-
165
4.90E-80
95
209
111440
111659
+
12
11283966
11284921
-
211
1.40E-243
99
219
96087
96312
+
12
11283966
11284921
-
166
0
93
226
102367
102601
+
12
11284927
11285054
-
230
1.0e-313
100
234
103245
103488
-
12
11284927
11285054
-
235
0
99
243
86009
86265
+
12
11286421
11286680
-
240
9.00E-173
98
256
96681
96941
+
12
11286421
11286680
-
201
0
94
261
120112
120366
-
12
11286688
11287181
-
185
0
93
261
120112
120366
-
12
11286688
11287181
-
181
0
92
261
96883
97145
-
12
11287194
11287946
-
258
0
100
262
97284
97580
+
12
11287194
11287749
-
292
0
100
296
84582
84881
-
12
11287750
11287946
-
291
0
99
299
89392
89709
-
12
11411920
11412088
-
305
0
99
317
104811
105131
-
12
11411920
11412088
-
320
0
100
320
112580
112910
+
12
11412098
11413142
-
326
0
100
330
114975
115321
+
12
11412098
11413142
-
330
0
99
346
96324
96674
+
12
12373622
12373829
+
247
0
93
351
119974
120380
-
12
13049922
13050133
+
394
0
99
406
120361
120852
-
12
13050174
13050278
+
431
0
97
495
120361
120852
-
12
13050279
13050447
+
423
0
96
495
120855
121411
-
12
13050279
13050447
+
532
0
99
556
120855
121411
-
12
13050856
13050986
+
524
0
99
556
100638
101261
-
12
13050856
13051843
+
619
0
100
623
101255
101923
-
12
13050856
13051843
+
660
0
100
668
91504
92238
+
12
13051993
13052118
+
734
0
100
734
112918
113736
+
12
13051993
13052118
+
775
0
99
819
113744
114966
+
12
13321149
13321385
-
1166
0
99
1222
114975
116199
+
12
13340686
13340907
-
1148
0
98
1224
100638
101923
-
12
13340907
13341237
-
1285
0
100
1285
90139
91490
+
12
13341239
13341372
-
1351
0
100
1351
116213
117765
+
12
13341442
13341599
-
1477
0
99
1553
80941
84070
+
12
13341599
13341713
-
3125
0
100
3129
116630
121367
-
12
13341715
13341832
-
4469
0
99
4745
246
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
84080
90129
+
12
13342161
13342297
-
6029
0
100
6049
78937
79038
-
12
13342161
13342297
-
101
1.50E-77
100
101
47348
47450
+
12
13342548
13342680
-
102
2.10E-75
100
102
47183
47287
+
12
13342681
13342785
-
104
0
100
104
61570
61675
+
12
13342786
13342901
-
105
3.60E-74
100
105
51359
51464
+
12
13342786
13342901
-
101
9.00E-69
99
105
44485
44590
-
12
13342786
13342901
-
101
8.70E-175
99
105
61026
61132
+
12
13343235
13343360
-
94
2.40E-81
97
106
53377
53483
+
12
13343359
13343461
-
90
0
96
106
53377
53483
-
12
13343359
13343461
-
90
1.20E-106
96
106
53377
53483
-
12
13343460
13343709
-
86
3.10E-74
95
106
53377
53483
+
12
13343995
13344174
-
86
0
95
106
59939
60050
+
12
13344174
13344303
-
103
1.80E-201
98
111
40907
41022
-
12
13344303
13344423
-
111
4.50E-306
99
115
59192
59310
-
12
13344303
13344423
-
118
4.50E-306
100
118
47357
47475
-
12
13344424
13344528
-
83
1.30E-34
92
119
50022
50143
-
12
13344424
13344528
-
109
3.50E-52
98
121
52696
52817
+
12
13344619
13344744
-
105
3.30E-48
97
121
47393
47529
+
12
13344619
13344744
-
120
4.50E-86
97
136
57911
58048
+
12
13344743
13344870
-
101
1.60E-84
93
137
52751
52896
-
12
13344743
13344870
-
141
1.70E-163
99
145
72609
72756
-
12
13344871
13345090
-
143
4.50E-306
99
147
51448
51599
-
12
13344871
13345090
-
139
1.60E-66
98
151
60051
60203
-
12
13345230
13345345
-
144
4.50E-306
99
152
65732
65884
-
12
13345345
13345725
-
140
1.70E-163
98
152
46869
47026
+
12
13345345
13345725
-
87
1.60E-37
88
163
65584
65765
+
12
13345724
13345839
-
177
0
99
181
72790
72975
-
12
13345724
13345839
-
175
8.70E-146
98
187
72892
73102
+
12
13345840
13345943
-
196
0
98
212
75427
75645
+
12
13345840
13345943
-
198
0
98
218
72493
72735
+
12
13346025
13346254
-
238
0
100
242
74728
74970
-
12
13346255
13346393
-
238
6.10E-155
100
242
48136
48419
+
12
13346488
13346729
-
283
0
100
283
66515
66801
+
12
13346731
13346872
-
258
7.30E-308
98
286
76806
77144
-
12
13346971
13347161
-
284
2.90E-154
96
340
65176
65576
+
12
13347162
13347300
-
396
0
100
400
247
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
51835
52334
+
12
13347162
13347300
-
495
0
100
499
58256
58778
+
12
13347388
13347538
-
522
0
100
522
58786
59310
+
12
13347576
13347684
-
512
0
99
524
64582
65168
+
12
13347576
13347684
-
582
0
100
586
72079
72768
+
12
13347685
13347823
-
689
0
100
689
69069
69816
+
12
13347685
13347823
-
747
0
100
747
74685
75442
+
12
13347824
13348435
-
729
0
99
757
79884
80664
+
12
13347824
13348435
-
619
0
95
783
69824
70647
+
12
13348433
13348639
-
823
0
100
823
52375
53321
+
12
13348433
13348639
-
946
0
100
946
79884
80941
+
12
13348654
13348779
-
1057
0
100
1057
70660
72071
+
12
13348654
13348779
-
1407
0
100
1411
73149
74698
+
12
13348842
13349098
-
1465
0
99
1549
59318
61132
+
12
13348842
13349098
-
1747
0
99
1815
78009
79869
+
12
13349496
13349637
-
1856
0
100
1860
44743
47168
+
12
13349496
13349637
-
2287
0
99
2430
65770
69056
+
12
13349638
13349737
-
3282
0
100
3286
61140
64574
+
12
13349638
13349737
-
3406
0
100
3434
40471
44743
-
12
13349738
13350085
-
4216
0
100
4280
47295
51836
+
12
13350083
13350186
-
4514
0
100
4542
53329
58248
+
12
13350267
13350376
-
4915
0
100
4919
72786
78000
+
12
13350647
13350843
-
5182
0
100
5218
488912
490521
+
12
13350842
13351052
-
1597
0
100
1609
488912
490521
+
12
13350842
13351052
-
1593
0
100
1609
465116
466411
+
12
13350842
13351052
-
1247
0
99
1295
464073
465033
+
12
13351057
13351246
-
892
0
98
960
471300
472042
-
12
13351415
13351599
-
742
0
100
742
471300
472042
+
12
13351598
13351710
-
714
0
99
742
488257
488904
+
12
13351598
13351710
-
600
0
98
652
488257
488904
+
12
13351713
13352004
-
600
0
98
652
472051
472604
-
12
13351713
13352004
-
549
0
100
553
472051
472604
+
12
13352194
13352370
-
493
0
97
553
459702
460105
-
12
13352194
13352370
-
331
3.20E-182
96
403
454723
455118
-
12
13352432
13352691
-
375
1.20E-203
99
395
485510
485891
-
12
13352687
13352823
-
369
0
99
381
488150
488511
-
12
13352687
13352823
-
341
5.70E-239
99
361
248
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
446952
447312
-
12
13352928
13353183
-
348
0
99
360
463735
464064
+
12
13353182
13353285
-
297
0
98
329
480504
480813
-
12
13353284
13353397
-
301
0
99
309
464182
464474
+
12
13353284
13353397
-
264
0
98
292
483870
484079
-
12
13353398
13353540
-
205
0
100
209
474629
474836
-
12
13353749
13353851
-
199
0
99
207
459126
459328
+
12
13353851
13354088
-
188
2.50E-167
98
204
488912
489115
+
12
13354088
13354227
-
191
4.90E-185
99
203
484930
485129
-
12
13354227
13354359
-
199
0
100
199
459270
459461
+
12
13354227
13354359
-
191
0
100
191
466374
466556
-
12
13354235
13354359
-
182
0
100
182
453965
454146
+
12
13354419
13354679
-
181
0
100
181
472903
473073
-
12
13354419
13354679
-
162
6.10E-82
99
170
460599
460768
+
12
13354967
13355096
-
169
4.90E-185
100
169
448697
448866
+
12
13355145
13355286
-
165
1.70E-85
99
169
463556
463725
+
12
13355145
13355286
-
165
1.20E-146
99
169
487425
487590
+
12
13355287
13355418
-
145
1.40E-73
97
165
485794
485956
-
12
13355416
13355545
-
154
0
99
162
474015
474174
-
12
13355416
13355545
-
144
0
98
160
464210
464356
+
12
13355591
13355696
-
45
5.50E-54
82
153
449146
449290
+
12
13355698
13355847
-
89
1.20E-68
90
149
451204
451351
+
12
13355698
13355847
-
139
1.40E-90
99
147
453857
454002
+
12
13355848
13355982
-
141
2.50E-167
99
145
450529
450672
-
12
13355848
13355982
-
136
0
99
144
450188
450331
+
12
13355983
13356404
-
103
1.00E-50
93
143
490163
490305
-
12
13356407
13356695
-
138
0
99
142
459736
459877
-
12
13356826
13356939
-
133
0
99
141
466183
466320
-
12
13357110
13357219
-
137
0
100
137
472664
472797
+
12
13357110
13357219
-
133
5.50E-291
100
133
462723
462851
+
12
13369525
13369626
-
100
1.40E-44
95
128
461341
461466
+
12
13369628
13369893
-
103
1.90E-42
95
127
486492
486618
+
12
13369894
13370177
-
126
1.20E-146
100
126
477493
477617
-
12
13370176
13370521
-
120
0
99
124
488652
488776
+
12
13370176
13370521
-
120
1.00E-139
99
124
485922
486043
-
12
13370615
13370752
-
121
0
100
121
486641
486754
-
12
13370842
13370962
-
105
0
98
113
249
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
446830
446941
-
12
13371089
13371285
-
103
0
98
111
486197
486307
-
12
13371089
13371285
-
106
0
99
110
459772
459881
-
12
13371501
13371691
-
109
0
100
109
449021
449129
+
12
13371501
13371691
-
69
1.20E-68
91
109
463485
463590
+
12
13371907
13372115
-
44
5.50E-54
85
108
479797
479904
+
12
13371907
13372115
-
103
1.00E-139
99
107
458494
458599
-
12
13372253
13372433
-
94
7.60E-120
97
106
473563
473668
-
12
13372253
13372433
-
105
0
100
105
451516
451619
+
12
13372504
13372864
-
103
4.10E-45
100
103
416243
416343
-
12
13373052
13373295
-
92
7.10E-247
98
100
434960
435064
-
12
13373298
13373505
-
104
0
100
104
410566
410670
-
12
13373298
13373505
-
96
3.90E-247
98
104
408611
408716
+
12
13373504
13373627
-
101
0
99
105
408677
408783
-
12
13373688
13373874
-
106
8.90E-114
100
106
420769
420876
-
12
13373874
13373982
-
87
1.10E-145
95
107
414406
414516
+
12
13374067
13374169
-
110
0
100
110
412503
412614
-
12
13374170
13374308
-
111
0
100
111
421064
421175
+
12
13374317
13374567
-
111
0
100
111
437128
437242
-
12
13374664
13374838
-
106
0
98
114
411412
411528
+
12
13374840
13375081
-
112
8.50E-256
99
116
405573
405690
+
12
13375184
13375313
-
113
0
99
117
433872
433991
+
12
13375309
13375423
-
99
1.80E-106
96
119
433872
433991
-
12
13375309
13375423
-
99
6.20E-146
96
119
433872
433991
-
12
13375512
13375635
-
95
3.10E-305
95
119
413783
413904
+
12
13375512
13375635
-
113
0
98
121
411707
411829
-
12
13375827
13376007
-
118
0
99
122
441141
441265
+
12
13376092
13376235
-
120
0
99
124
429536
429662
-
12
13376092
13376235
-
126
0
100
126
440892
441018
+
12
13376240
13376353
-
102
0
95
126
440892
441018
-
12
13376438
13376544
-
98
0
94
126
442305
442427
-
12
13376438
13376544
-
81
1.80E-128
91
129
442305
442427
-
12
13376623
13376918
-
77
0
90
129
410568
410698
+
12
13376623
13376918
-
130
0
100
130
440107
440237
-
12
13376919
13377064
-
90
0
92
130
409281
409410
-
12
13377065
13377216
-
123
1.10E-55
98
131
405313
405446
+
12
13377450
13377560
-
130
0
99
134
250
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
428872
429009
-
12
13377559
13377685
-
129
0
99
137
414800
414937
+
12
13377783
13377940
-
125
0
98
137
416782
416920
+
12
13378015
13378127
-
136
0
99
138
424999
425138
-
12
13378131
13378239
-
139
1.10E-274
100
139
428587
428729
-
12
13378131
13378239
-
138
5.90E-150
99
142
423936
424079
-
12
13378239
13378381
-
139
8.20E-161
99
143
412481
412624
-
12
13378239
13378381
-
139
6.20E-146
99
143
412481
412624
+
12
13378540
13378651
-
135
0
99
143
415339
415489
+
12
13378540
13378651
-
130
0
97
150
412420
412571
+
12
13378708
13378838
-
151
0
100
151
423657
423809
+
12
13378708
13378838
-
140
0
98
152
422854
423007
+
12
13378836
13378994
-
153
0
100
153
411613
411768
+
12
13378836
13378994
-
143
1.40E-69
98
155
441867
442023
+
12
13379059
13379176
-
152
2.60E-197
99
156
440888
441043
-
12
13379187
13379469
-
129
8.50E-62
96
157
413286
413450
-
12
13379694
13379814
-
156
0
99
164
418196
418372
+
12
13379694
13379814
-
164
0
98
176
411850
412043
-
12
13379987
13380097
-
185
0
99
193
441229
441422
+
12
13380097
13380201
-
185
2.00E-244
99
193
423949
424144
-
12
13380202
13380521
-
187
0
99
195
433563
433765
+
12
13380202
13380521
-
202
0
100
202
423696
423900
+
12
13380521
13380796
-
204
1.70E-108
100
204
412078
412289
+
12
13380521
13380796
-
203
0
99
211
442090
442306
-
12
13380797
13380927
-
172
1.80E-128
95
216
442291
442511
+
12
13380927
13381235
-
220
0
100
220
416625
416847
+
12
13380927
13381235
-
220
0
100
222
420872
421094
-
12
13381543
13381664
-
206
1.10E-145
98
222
426086
426324
-
12
13381664
13381815
-
238
1.30E-128
100
238
406620
406862
-
12
13381959
13382264
-
199
1.80E-101
95
243
440518
440774
-
12
13382265
13382369
-
206
0
95
258
440518
440774
+
12
13382265
13382369
-
202
0
95
258
443085
443346
-
12
13382625
13382827
-
253
0
99
261
413091
413359
+
12
13382905
13383072
-
252
0
99
268
411429
411704
+
12
13382905
13383072
-
255
0
98
275
423885
424161
-
12
13383072
13383223
-
272
2.90E-239
100
276
441780
442060
+
12
13383072
13383223
-
276
0
100
280
251
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
419772
420064
+
12
13383222
13383341
-
252
2.40E-134
97
292
422461
422877
-
12
13383605
13383751
-
374
0
97
422
442180
442602
-
12
13383937
13384083
-
299
3.00E-161
93
423
421500
422461
-
12
13383937
13384083
-
957
0
100
961
441345
442306
-
12
13384084
13384203
-
837
0
97
961
430120
431205
+
12
13384204
13384467
-
1081
0
100
1085
441028
442265
-
12
13384467
13384704
-
1054
0
96
1238
414800
416263
+
12
13384467
13384704
-
1451
0
100
1463
411337
412864
+
12
13384848
13384963
-
1515
0
100
1527
412862
414792
+
12
13384967
13385122
-
1922
0
100
1930
409281
411324
+
12
13384967
13385122
-
2039
0
100
2043
416262
421494
+
12
13385122
13385397
-
5214
0
100
5232
403017
403118
+
12
13385122
13385397
-
97
0
99
101
370429
370532
+
12
13385489
13385605
-
103
1.00E-45
100
103
402594
402697
-
12
13385606
13385777
-
99
4.30E-216
99
103
393996
394102
+
12
13385854
13385964
-
106
1.20E-281
100
106
396382
396488
+
12
13385854
13385964
-
102
2.80E-246
99
106
377407
377512
-
12
13385971
13386073
-
94
1.20E-107
97
106
382398
382503
+
12
13385971
13386073
-
44
3.60E-56
85
108
378685
378794
-
12
13386163
13386273
-
109
4.10E-121
100
109
367934
368042
+
12
13386163
13386273
-
69
3.90E-70
91
109
365743
365854
-
12
13386282
13386641
-
103
0
98
111
399391
399517
-
12
13386282
13386641
-
122
4.00E-303
99
126
380254
380379
+
12
13386639
13386764
-
103
2.70E-45
95
127
381636
381764
+
12
13386765
13387044
-
100
1.10E-44
95
128
392151
392283
+
12
13386765
13387044
-
128
1.10E-261
99
132
385096
385233
-
12
13387044
13387373
-
137
4.00E-303
100
137
389249
389389
-
12
13387370
13387538
-
128
2.80E-58
98
140
378649
378790
-
12
13387370
13387538
-
133
9.00E-238
99
141
369101
369244
+
12
13387539
13387696
-
103
6.50E-51
93
143
369442
369585
-
12
13387539
13387696
-
136
4.10E-121
99
144
372770
372915
+
12
13387695
13387856
-
141
0
99
145
370117
370264
+
12
13387695
13387856
-
139
1.20E-137
99
147
368059
368203
+
12
13387929
13388133
-
89
3.90E-70
90
149
383123
383269
+
12
13388212
13388364
-
45
3.60E-56
82
153
395804
395966
-
12
13388212
13388364
-
154
3.10E-77
99
162
252
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
379512
379681
+
12
13388364
13388464
-
169
0
100
169
367610
367779
+
12
13388464
13388584
-
165
1.50E-85
99
169
382469
382638
+
12
13388853
13388992
-
165
3.70E-81
99
169
393777
393955
+
12
13388853
13388992
-
166
0
98
178
372878
373059
+
12
13388993
13389140
-
181
0
100
181
401321
401502
+
12
13389141
13389272
-
161
3.90E-159
97
181
385287
385469
-
12
13389273
13389419
-
182
0
100
182
392620
392807
+
12
13389273
13389419
-
179
0
99
187
378183
378374
+
12
13389608
13389869
-
191
0
100
191
402791
402995
-
12
13389608
13389869
-
200
0
100
204
378039
378241
+
12
13389869
13390124
-
188
0
98
204
400578
400797
-
12
13390130
13390433
-
215
9.40E-226
100
219
400578
400797
+
12
13390620
13390909
-
211
2.90E-153
99
219
401717
401955
-
12
13390907
13391377
-
234
4.00E-303
100
238
393419
393663
+
12
13390907
13391377
-
240
2.60E-210
100
244
399754
400015
-
12
13391377
13391511
-
90
3.90E-47
83
266
400686
400973
+
12
13391510
13391645
-
287
0
100
287
383095
383387
+
12
13391661
13391810
-
264
0
98
292
382648
382977
+
12
13391812
13391912
-
297
0
98
329
365865
366225
-
12
13392100
13392292
-
348
0
99
360
373636
374031
-
12
13392100
13392292
-
375
2.70E-203
99
395
378615
379018
-
12
13392100
13392292
-
331
2.00E-181
96
403
395692
396401
+
12
13392293
13392500
-
657
0
98
709
382986
383945
+
12
13392293
13392500
-
891
0
98
959
384029
385324
+
12
13392670
13392772
-
1247
0
99
1295
353873
353977
-
12
13392773
13392883
-
104
0
100
104
323782
323892
+
12
13392885
13393098
-
102
0
98
110
334897
335008
+
12
13393182
13393284
-
107
0
99
111
356041
356155
-
12
13393385
13393528
-
106
0
98
114
352785
352904
-
12
13393385
13393528
-
99
2.70E-42
96
119
352785
352904
-
12
13393528
13393699
-
99
5.70E-68
96
119
352785
352904
+
12
13393699
13393822
-
99
1.00E-71
96
119
352785
352904
-
12
13393699
13393822
-
95
2.30E-184
95
119
360054
360178
+
12
13393822
13393985
-
120
0
99
124
362827
362950
-
12
13393822
13393985
-
112
2.80E-48
98
124
348449
348575
-
12
13393987
13394113
-
126
0
100
126
253
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
359805
359931
+
12
13393987
13394113
-
102
0
95
126
359805
359931
-
12
13394113
13394399
-
98
0
94
126
339815
339942
-
12
13394289
13394399
-
123
2.60E-275
99
127
361218
361340
-
12
13394289
13394399
-
81
6.30E-129
91
129
361218
361340
-
12
13394550
13394671
-
77
0
90
129
325857
325987
+
12
13394550
13394671
-
118
0
98
130
359020
359150
-
12
13394550
13394671
-
90
0
92
130
324119
324249
+
12
13394930
13395163
-
127
0
99
131
338138
338272
-
12
13394930
13395163
-
130
0
99
134
347785
347922
-
12
13395162
13395295
-
129
3.30E-279
99
137
343912
344051
-
12
13395291
13395586
-
139
0
100
139
347500
347642
-
12
13395586
13395698
-
138
1.90E-205
99
142
342849
342992
-
12
13395699
13395810
-
139
1.40E-196
99
143
342570
342722
+
12
13395811
13396023
-
140
0
98
152
341767
341920
+
12
13396022
13396231
-
153
0
100
153
360780
360936
+
12
13396031
13396173
-
152
2.60E-197
99
156
359801
359956
-
12
13396031
13396173
-
129
2.50E-59
96
157
363976
364141
+
12
13396031
13396173
-
161
2.90E-81
99
165
331041
331231
+
12
13396420
13396533
-
186
0
99
190
360142
360335
+
12
13396608
13396724
-
185
8.40E-248
99
193
342862
343057
-
12
13396608
13396724
-
187
3.30E-279
99
195
329900
330091
-
12
13396815
13397113
-
92
1.40E-70
87
196
352476
352678
+
12
13398270
13398381
-
202
0
100
202
342609
342813
+
12
13398384
13398501
-
204
5.90E-105
100
204
330369
330583
-
12
13398384
13398501
-
210
3.30E-279
100
214
361003
361219
-
12
13398564
13398969
-
172
6.30E-129
95
216
331616
331835
-
12
13398564
13398969
-
199
1.90E-101
98
219
361204
361424
+
12
13399046
13399318
-
220
0
100
220
328375
328609
+
12
13399410
13399531
-
230
0
100
234
344999
345237
-
12
13399532
13399640
-
238
4.70E-129
100
238
359431
359687
-
12
13399734
13399877
-
206
0
95
258
359431
359687
+
12
13399908
13400063
-
202
0
95
258
361998
362259
-
12
13399908
13400063
-
253
0
99
261
342798
343074
-
12
13400330
13400438
-
272
2.60E-275
100
276
360693
360973
+
12
13400432
13400576
-
276
0
100
280
327246
327660
+
12
13400432
13400576
-
410
0
100
414
254
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
341374
341790
-
12
13400576
13400699
-
374
0
97
422
361093
361515
-
12
13400576
13400699
-
299
6.20E-163
93
423
337644
338361
-
12
13400700
13400886
-
717
0
100
717
360258
361219
-
12
13400976
13401262
-
837
0
97
961
340349
341374
-
12
13401265
13401408
-
1021
0
100
1025
349033
350118
+
12
13401408
13401585
-
1081
0
100
1085
336511
337636
-
12
13401585
13401767
-
1105
0
100
1125
359941
361178
-
12
13401767
13401905
-
1054
0
96
1238
338399
340172
-
12
13401767
13401905
-
1769
0
100
1773
313326
315416
+
12
13401915
13402016
-
2070
0
100
2090
315425
317210
+
12
13402017
13402124
-
1766
0
100
1786
283879
285342
+
12
13402126
13402269
-
1451
0
100
1463
283291
283871
+
12
13402271
13402474
-
580
0
100
580
289712
290227
+
12
13402271
13402474
-
445
2.80E-275
97
517
294215
294665
-
12
13402563
13402707
-
446
7.50E-299
100
450
317382
317745
+
12
13402706
13403123
-
363
0
100
363
311938
312286
+
12
13403224
13403391
-
348
0
100
348
299390
299720
+
12
13403395
13403567
-
303
0
98
331
285632
285938
-
12
13403404
13403522
-
298
4.90E-280
99
306
315127
315417
-
12
13403404
13403522
-
278
3.10E-273
99
290
285341
285573
+
12
13403566
13403675
-
232
0
100
232
291974
292204
-
12
13403826
13404398
-
230
0
100
230
320548
320761
-
12
13404396
13404505
-
209
3.10E-273
100
213
320491
320696
-
12
13404396
13404505
-
197
6.00E-114
99
205
315992
316195
+
12
13404600
13404724
-
191
2.80E-99
99
203
300659
300844
+
12
13404719
13404848
-
181
0
99
185
289206
289384
-
12
13404719
13404848
-
170
1.20E-157
99
178
317022
317194
+
12
13404719
13404848
-
156
9.70E-250
98
172
317218
317388
+
12
13404851
13404951
-
170
0
100
170
291594
291752
-
12
13404851
13404951
-
158
0
100
158
302308
302465
-
12
13404950
13405060
-
149
6.50E-191
99
157
284418
284568
+
12
13404950
13405060
-
130
0
97
150
312435
312583
+
12
13404950
13405060
-
140
2.90E-240
99
148
313754
313900
-
12
13404950
13405060
-
146
7.80E-199
100
146
318229
318374
-
12
13405061
13405193
-
133
6.50E-191
98
145
294583
294722
-
12
13405186
13405294
-
139
4.50E-90
100
139
255
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
294950
295089
+
12
13405577
13405795
-
131
5.30E-209
99
139
283879
284016
+
12
13405577
13405795
-
125
0
98
137
291111
291247
-
12
13406010
13406113
-
132
7.80E-199
99
136
296857
296992
-
12
13406010
13406113
-
131
2.40E-194
99
135
302810
302943
+
12
13406010
13406113
-
129
7.90E-215
99
133
293185
293307
+
12
13406290
13406440
-
122
0
100
122
301010
301131
+
12
13406290
13406440
-
121
2.50E-221
100
121
300198
300315
-
12
13406290
13406440
-
113
0
99
117
313324
313440
-
12
13406442
13406636
-
112
1.40E-205
99
116
298148
298262
-
12
13406442
13406636
-
106
0
98
114
306958
307070
+
12
13406637
13407050
-
112
9.70E-250
100
112
283485
283595
+
12
13407050
13407324
-
110
0
100
110
309054
309161
+
12
13407050
13407324
-
75
1.20E-67
93
107
295616
295719
+
12
13407050
13407324
-
99
0
99
103
285322
285422
-
12
13407325
13407558
-
92
4.90E-280
98
100
242827
243081
-
12
13407559
13407740
-
242
1.20E-177
99
254
242896
243000
-
12
13407559
13407740
-
104
0
100
104
244648
244823
+
12
13407734
13407901
-
171
1.50E-272
99
175
245413
245521
-
12
13408036
13408204
-
108
0
100
108
247314
247618
+
12
13408204
13408315
-
284
5.40E-294
98
304
247611
247867
+
12
13408481
13408656
-
256
5.40E-294
100
256
248111
248375
-
12
13408787
13408931
-
256
3.30E-204
99
264
249534
249654
-
12
13408787
13408931
-
120
1.00E-99
100
120
249633
249753
+
12
13408930
13409108
-
120
0
100
120
249633
249753
+
12
13409109
13409362
-
120
1.10E-64
100
120
249633
249753
-
12
13409361
13409559
-
120
1.40E-98
100
120
252205
252410
-
12
13409413
13409559
-
189
4.00E-96
98
205
253165
253406
-
12
13409560
13409842
-
217
1.50E-116
98
241
253423
253773
+
12
13409575
13409842
-
326
6.40E-180
98
350
253649
253757
+
12
13409575
13409842
-
104
0
99
108
253774
254036
+
12
13409842
13410038
-
242
5.50E-127
98
262
254062
255483
-
12
13409842
13410038
-
1333
0
98
1421
254627
255223
-
12
13410410
13410599
-
596
0
100
596
254766
254946
+
12
13410410
13410599
-
176
1.50E-272
99
180
255228
255483
-
12
13410740
13410897
-
255
0
100
255
255491
255677
-
12
13411140
13411456
-
174
0
98
186
256
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
255491
256952
-
12
13411457
13411608
-
1445
0
100
1461
255691
255965
-
12
13411607
13411808
-
258
0
99
274
256952
257981
-
12
13411607
13411808
-
1025
0
100
1029
257095
257389
+
12
13411898
13412011
-
247
3.80E-130
96
295
258002
264139
-
12
13412230
13412390
-
6105
0
100
6137
258477
258621
+
12
13412230
13412390
-
144
3.60E-233
100
144
260911
261160
+
12
13412389
13412490
-
245
0
100
249
261185
261582
+
12
13412389
13412490
-
365
0
98
397
261434
261564
+
12
13412488
13412595
-
118
8.40E-237
98
130
261438
261698
-
12
13412596
13412705
-
248
0
99
260
262407
262980
-
12
13412596
13412705
-
537
0
98
573
263028
263137
-
12
13412707
13412812
-
109
0
100
109
264186
267680
-
12
13412811
13413013
-
3482
0
100
3494
264524
264677
-
12
13412811
13413013
-
145
0
99
153
265534
265648
-
12
13413171
13413339
-
114
1.20E-174
100
114
267231
267345
-
12
13413171
13413339
-
106
0
98
114
267688
268494
-
12
13413423
13413626
-
806
0
100
806
267825
267946
+
12
13413627
13413761
-
117
1.10E-57
99
121
268126
268244
+
12
13413627
13413761
-
118
1.30E-241
100
118
268508
271851
-
12
13414167
13414272
-
3319
0
100
3343
268961
269171
+
12
13417526
13417676
-
206
3.60E-233
100
210
269019
269162
+
12
13417526
13417676
-
139
0
99
143
269041
269152
-
12
13417676
13417917
-
111
0
100
111
269694
269808
-
12
13417676
13417917
-
110
0
99
114
270716
270825
+
12
13417952
13418144
-
109
1.20E-53
100
109
271390
271627
-
12
13417952
13418144
-
229
0
99
237
271562
271851
-
12
13418145
13418290
-
281
0
99
289
271650
271769
-
12
13418291
13418395
-
104
2.70E-236
97
120
271901
273654
-
12
14772191
14772330
-
1745
0
100
1753
273283
273549
-
12
14981041
14981205
-
262
0
100
266
273645
275407
-
12
16610892
16611501
-
1642
0
98
1762
273645
277757
+
12
16610892
16611501
-
4084
0
100
4112
273735
273845
-
12
16631522
16632131
-
107
1.10E-246
99
111
274752
274902
-
12
16631522
16632131
-
150
1.00E-72
100
150
274799
274944
+
12
17342067
17342327
-
137
4.80E-209
99
145
274900
275028
-
12
17342067
17342327
-
120
0
98
128
257
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
275262
275407
-
12
17342327
17342676
-
133
0
98
145
276966
277163
-
12
17342327
17342676
-
197
0
100
197
277509
278495
-
12
17342677
17342902
-
948
0
99
988
277758
280409
+
12
17342677
17342902
-
2639
0
100
2651
279651
279755
-
12
17357534
17357660
-
92
0
97
104
279653
279783
+
12
17357534
17357660
-
126
1.40E-202
99
130
280422
281949
+
12
19160287
19160529
+
1515
0
100
1527
280497
280613
+
12
19710616
19710772
+
112
1.50E-272
99
116
280514
280789
+
12
19710616
19710772
+
255
0
98
275
280698
280853
+
12
20419344
20419983
-
143
5.80E-98
98
155
280792
280914
-
12
20419729
20419845
-
118
1.10E-246
99
122
280935
281128
-
12
20419729
20419845
-
185
9.20E-263
99
193
281163
281374
+
12
20419992
20420309
-
203
4.50E-251
99
211
281505
281656
+
12
20420319
20421738
-
151
0
100
151
281566
281709
-
12
20421747
20423045
-
139
0
99
143
281566
281709
+
12
20423054
20423204
-
135
1.30E-307
99
143
281588
281699
-
12
20423213
20426304
-
111
0
100
111
281947
283297
+
12
20426421
20426857
-
1342
0
100
1350
282176
282444
+
12
20426540
20426644
-
252
6.00E-230
99
268
282371
282535
-
12
20426859
20427981
-
156
9.20E-263
99
164
282868
282989
+
12
20427772
20427910
-
113
4.50E-251
98
121
202351
203251
+
12
20427990
20428706
-
892
0
100
900
202505
202946
+
12
20428744
20430515
-
283
0
100
287
203012
203885
-
12
20430693
20431717
-
204
8.70E-105
99
212
203140
204040
+
12
20430757
20431717
-
71
7.20E-47
91
111
203260
205514
+
12
20431726
20432147
-
1345
0
100
1345
204102
206214
-
12
20431726
20432147
-
353
0
99
361
204127
206381
-
12
20436908
20437268
-
426
0
97
478
204680
208378
+
12
20436908
20437268
-
1361
0
100
1369
204734
207694
-
12
20437701
20438044
-
521
0
97
581
205169
208103
-
12
20439143
20440227
-
104
1.50E-291
97
116
205199
208894
-
12
20439143
20440227
-
748
0
97
848
206042
209858
-
12
20440867
20441509
-
125
3.90E-289
100
125
206227
210656
+
12
20441518
20441668
-
545
0
100
553
206227
210656
-
12
20441677
20444768
-
489
0
97
553
206789
213105
-
12
20444885
20448123
-
1762
0
98
1878
258
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
206789
212971
+
12
20445004
20445109
-
1720
0
100
1744
212207
222209
-
12
20445603
20445745
-
138
0
99
146
212838
223934
+
12
20447767
20447885
-
605
0
100
609
213457
229731
+
12
20447767
20447885
-
5128
0
100
5168
214267
228191
-
12
20448133
20449283
-
1880
0
98
2008
214603
226965
-
12
20448487
20448606
-
107
0
99
111
215620
229039
-
12
20449292
20453757
-
150
7.10E-71
100
150
215667
229128
+
12
20453757
20454119
-
137
0
99
145
215768
229313
-
12
20464840
20465009
-
120
3.50E-286
98
128
216130
230054
-
12
20465018
20466803
-
133
0
98
145
217834
233514
-
12
20466813
20468902
-
197
3.90E-289
100
197
218377
235389
-
12
20468896
20469629
-
948
0
99
988
218626
237552
+
12
20469644
20470994
-
2639
0
100
2651
220519
238791
-
12
20470241
20470357
-
96
6.80E-188
98
104
220521
238821
+
12
20471006
20477054
-
130
2.10E-292
100
130
221290
241756
+
12
20477065
20480193
-
1515
0
100
1527
221365
240495
+
12
20480194
20481250
-
112
0
99
116
221382
240688
+
12
20481266
20483125
-
255
0
98
275
221566
240936
+
12
20483135
20488352
-
143
4.90E-110
98
155
221660
241091
-
12
20488371
20489059
-
118
0
99
122
221803
241448
-
12
20489068
20490478
-
185
0
99
193
222031
241922
+
12
20490492
20491314
-
203
0
99
211
222373
242546
+
12
20491323
20492069
-
151
0
100
151
222434
242660
-
12
20492083
20495368
-
139
3.80E-175
99
143
222434
242660
+
12
20495365
20495545
-
135
0
99
143
222456
242672
-
12
20495556
20495955
-
111
2.70E-302
100
111
222815
243776
+
12
20495964
20496549
-
493
0
100
497
223044
244020
+
12
20496558
20499991
-
267
0
99
283
223277
244318
-
12
20498740
20499189
-
115
1.60E-206
100
115
225662
249391
-
12
20500000
20501813
-
410
0
100
418
226126
250062
+
12
20501822
20502345
-
145
1.20E-304
98
161
236144
270233
+
12
20502354
20502875
-
292
0
100
296
238948
275737
-
12
20502884
20507802
-
189
3.80E-175
99
193
239006
275992
+
12
20507649
20507754
-
327
0
100
331
239933
277624
+
12
20507811
20508756
-
81
1.10E-33
94
109
241244
280258
-
12
20508798
20509296
-
67
3.20E-61
89
123
259
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
241905
281604
-
12
20510415
20514956
-
145
2.30E-71
100
145
242435
282641
-
12
20514964
20515067
-
114
0
98
122
242642
283112
-
12
20515083
20517500
-
175
0
99
179
180935
181037
+
12
20515616
20517500
-
102
8.60E-296
100
102
174956
175058
-
12
20517501
20521778
+
94
0
98
102
173523
173627
-
12
20517501
20522159
+
96
0
98
104
169819
169923
-
12
20521779
20522159
+
96
0
98
104
181968
182074
-
12
20522171
20522838
+
98
0
98
106
172587
172696
-
12
20522171
20522838
+
109
0
100
109
187527
187636
+
12
20534155
20534777
+
105
0
99
109
179576
179686
-
12
20534155
20534777
+
110
1.80E-246
100
110
163096
163206
-
12
20534765
20535416
+
106
4.60E-137
99
110
176842
176953
+
12
20534765
20535416
+
111
3.90E-51
100
111
190081
190194
+
12
20535424
20537031
+
113
0
100
113
176547
176660
-
12
20535424
20537466
+
113
0
100
113
163540
163653
-
12
20537475
20538466
+
105
0
98
113
175157
175275
-
12
20538486
20543240
+
94
7.00E-41
95
118
175259
175379
-
12
20543250
20545025
+
112
0
98
120
162821
162942
-
12
20544771
20544887
+
121
0
100
121
185767
185891
-
12
20544771
20544887
+
124
0
100
124
165551
165675
+
12
20545034
20545351
+
120
0
99
124
163391
163517
+
12
20545361
20546780
+
126
6.40E-60
100
126
179959
180085
+
12
20546789
20548087
+
122
5.30E-226
99
126
186613
186739
-
12
20548096
20548246
+
122
0
99
126
199192
199323
+
12
20548255
20551346
+
127
0
99
131
183204
183336
+
12
20551460
20552829
+
132
4.50E-265
100
132
177751
177884
-
12
20551582
20551687
+
113
0
96
133
175747
175886
+
12
20552181
20552323
+
139
0
100
139
170689
170831
+
12
20564908
20566784
+
138
2.60E-188
99
142
167062
167204
-
12
20566428
20566546
+
138
0
99
142
182974
183118
-
12
20566428
20566546
+
140
0
99
144
187791
187935
-
12
20566797
20567947
+
136
0
99
144
191699
191843
+
12
20567151
20567270
+
104
0
93
144
191699
191843
+
12
20567956
20572964
+
104
0
93
144
182567
182710
+
12
20573057
20578226
+
104
0
93
144
191699
191843
-
12
20573394
20573537
+
104
0
93
144
260
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
161881
162028
-
12
20578250
20580026
+
147
5.90E-133
100
147
178482
178633
+
12
20580035
20580878
+
151
0
100
151
178482
178633
+
12
20580888
20581018
+
151
0
100
151
178482
178633
-
12
20581133
20583243
+
151
0
100
151
178482
178633
-
12
20583167
20583588
+
151
0
100
151
181411
181563
-
12
20583597
20584065
+
152
0
100
152
191112
191270
-
12
20584025
20584217
+
150
0
99
158
162693
162855
-
12
20584066
20584965
+
154
0
99
162
180544
180707
-
12
20584975
20586319
+
135
1.10E-63
96
163
164324
164489
+
12
20586395
20587763
+
145
1.20E-73
97
165
184828
184996
+
12
20587803
20588355
+
168
0
100
168
185170
185338
+
12
20587803
20588355
+
161
0
99
169
185497
185669
-
12
20587803
20588355
+
148
0
97
172
184688
184861
+
12
20588364
20589105
+
165
0
99
173
182002
182185
-
12
20588364
20590106
+
171
0
98
183
168981
169178
-
12
20588364
20589105
+
189
0
99
197
165811
166014
+
12
20590112
20590720
+
191
0
99
203
185219
185427
-
12
20590731
20595897
+
204
6.80E-107
100
208
169395
169645
-
12
20591787
20595897
+
238
0
99
250
175487
175738
+
12
20591877
20592094
+
235
0
98
251
182742
183002
+
12
20595890
20598540
+
248
2.20E-132
99
260
184498
184771
-
12
20595890
20598540
+
265
0
99
273
175420
175738
+
12
20596498
20598540
+
318
0
100
318
175420
175738
-
12
20598554
20600080
+
318
0
100
318
175420
175738
+
12
20598554
20600080
+
314
0
100
318
187206
187550
-
12
20598554
20600080
+
312
0
98
344
165049
165410
-
12
20599698
20599840
+
341
0
99
361
162409
162790
-
12
20599748
20599925
+
369
0
99
381
172914
173336
+
12
20599748
20599925
+
406
0
99
422
201463
201877
+
12
20600088
20602017
+
352
0
96
424
181849
182287
-
12
20600088
20601437
+
422
0
99
438
201885
202351
+
12
20600088
20600584
+
434
0
98
470
177831
178474
-
12
20601438
20602017
+
639
0
100
643
174769
175412
-
12
20602026
20603488
+
631
0
100
643
165156
165803
+
12
20602026
20603488
+
600
0
98
652
165156
165803
+
12
20603472
20608703
+
600
0
98
652
261
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
198340
199184
+
12
20603472
20603703
+
844
0
100
844
168874
169850
+
12
20612138
20613890
+
960
0
100
976
167863
168855
+
12
20613941
20617282
+
992
0
100
992
167863
168855
+
12
20616629
20616771
+
988
0
100
992
185102
186253
+
12
20616629
20616771
+
1151
0
100
1151
185102
186253
-
12
20616629
20616771
+
1151
0
100
1151
185102
186253
+
12
20617297
20618102
+
1147
0
100
1151
177175
178474
+
12
20618112
20621605
+
1299
0
100
1299
177175
178474
+
12
20621653
20627789
+
1299
0
100
1299
177175
178474
-
12
20627811
20628839
+
1299
0
100
1299
181846
183216
+
12
20628840
20630300
+
1358
0
100
1370
175795
177167
+
12
20630309
20630563
+
1368
0
100
1372
175747
177167
-
12
20630560
20631155
+
1420
0
100
1420
175747
177167
+
12
20631157
20632441
+
1420
0
100
1420
173636
175412
+
12
20631157
20632441
+
1772
0
100
1776
173636
175412
+
12
20632429
20633080
+
1768
0
100
1776
196555
198332
+
12
20632429
20633080
+
1773
0
100
1777
183211
185090
+
12
20633088
20634695
+
1867
0
100
1879
165811
167855
+
12
20633088
20635130
+
2032
0
100
2044
165811
167855
+
12
20635139
20636130
+
2028
0
100
2044
199433
201538
+
12
20636150
20637125
+
2067
0
99
2111
178641
181733
-
12
20637121
20640761
+
3088
0
100
3092
178641
181733
+
12
20640771
20642546
+
3084
0
100
3092
178641
181733
-
12
20642292
20642408
+
3084
0
100
3092
178641
181733
+
12
20642292
20642408
+
3068
0
100
3092
181849
185090
-
12
20642555
20642872
+
3221
0
100
3241
181846
185090
+
12
20653666
20655037
+
3216
0
100
3244
186261
189871
+
12
20655046
20656344
+
3598
0
100
3610
169988
173627
+
12
20656353
20656503
+
3613
0
100
3641
186261
190727
-
12
20656512
20659603
+
4446
0
100
4466
168874
173627
+
12
20659717
20662958
+
4735
0
100
4755
186261
191270
+
12
20659839
20659944
+
4993
0
100
5009
191362
196532
+
12
20660438
20660580
+
5142
0
100
5170
127924
128024
-
12
20662602
20662720
+
101
0
100
101
150462
150566
-
12
20662969
20664119
+
105
0
100
105
139018
139122
-
12
20663323
20663442
+
101
0
99
105
262
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
156696
156802
+
12
20664128
20667737
+
103
2.60E-226
99
107
129751
129862
+
12
21311221
21311734
+
108
1.50E-270
99
112
135434
135548
-
12
21430205
21430366
-
111
0
99
115
154392
154515
-
12
21562122
21562515
-
120
0
99
124
126027
126153
+
12
21562122
21562515
-
123
2.70E-61
99
127
125101
125228
-
12
21562515
21562911
-
105
1.00E-56
95
129
149563
149695
+
12
21562909
21563157
-
133
1.50E-270
100
133
129053
129191
+
12
21567861
21568152
-
135
9.50E-116
99
139
127951
128090
-
12
21568154
21568493
-
136
1.10E-148
99
140
129682
129831
+
12
21922000
21922117
+
118
1.70E-86
95
150
122432
122582
-
12
21922116
21922324
+
139
0
98
151
150914
151072
-
12
21922116
21922324
+
144
0
98
160
125866
126026
-
12
21922328
21922730
+
157
0
99
161
125023
125189
+
12
21922328
21922730
+
131
1.30E-76
95
167
126953
127121
+
12
22304641
22304790
-
145
0
96
169
149802
149971
-
12
22304641
22304790
-
162
3.90E-82
99
170
124119
124295
-
12
23531238
23531655
-
173
0
99
177
121411
121607
-
12
23531238
23531655
-
177
4.00E-89
97
197
151528
151734
-
12
23831962
23832741
-
199
0
99
207
160769
160977
-
12
23991693
23991813
-
205
0
100
209
122136
122371
-
12
24134387
24134643
+
208
0
97
236
128749
128986
+
12
24562670
24562777
+
230
1.50E-270
99
238
134455
134730
-
12
24562670
24562777
+
272
0
100
276
157403
157711
-
12
24562776
24562922
+
301
0
99
309
122680
123110
-
12
24562776
24562922
+
335
0
94
435
123983
124453
-
12
24643620
24643749
+
463
0
100
471
148950
149502
-
12
24643822
24644026
+
549
0
100
553
148950
149502
+
12
24644027
24644167
+
493
0
97
553
125816
126425
-
12
24644173
24644390
+
578
0
99
610
125816
126425
-
12
24644734
24644884
+
578
0
99
610
130374
130988
-
12
24644998
24645158
+
579
0
99
615
121411
122138
-
12
24645393
24645497
+
647
0
97
735
148199
148940
-
12
24645393
24645497
+
742
0
100
742
148199
148940
+
12
24645497
24645651
+
714
0
99
742
125901
126943
+
12
24645497
24645651
+
961
0
98
1045
123254
124776
-
12
24645497
24645651
+
1399
0
98
1527
263
Mitochondria
Rice Chromosome
Stats
Start
End
Ori
Name
Start
End
Ori
Score
E-val
%ID
Length
139276
141160
+
12
26374197
26374333
-
1877
0
100
1885
134617
139275
-
12
26374197
26374361
-
4643
0
100
4659
264
Table A-3. Regions in the rice genome that align with the chloroplast and
mitochondrial genomes
Chromosome
Stats
Name
Start
End
Score
E-value
%ID
Length
1
33866500
33866741
242
1.10E-133
100
242
1
14119934
14120962
942
0
98
1030
1
14120966
14121202
217
3.90E-121
98
237
1
14121475
14121627
137
1.80E-73
97
153
1
14122334
14122491
150
4.40E-78
99
158
1
19324506
19324656
131
6.80E-70
97
151
1
28741733
28741882
134
5.50E-70
97
150
1
28741733
28741879
131
3.70E-68
97
147
1
33825204
33826025
806
0
100
822
1
33860717
33861517
797
0
100
801
1
33866753
33868023
1267
0
100
1271
1
33880076
33880228
149
1.30E-80
99
153
1
33880934
33881590
657
0
100
657
1
33893370
33893493
124
9.60E-64
100
124
1
33899948
33900078
131
7.20E-68
100
131
1
34038380
34038526
143
3.50E-75
99
147
1
34698144
34698281
134
1.30E-68
99
138
1
39445747
39445944
194
2.10E-104
99
198
1
39448764
39449062
279
2.00E-154
98
299
1
42048687
42049037
351
4.90E-198
100
351
2
18610761
18610873
109
1.30E-53
99
113
2
14938974
14939221
197
3.40E-106
95
249
3
31759894
31760130
237
4.70E-133
100
237
3
4991086
4991368
259
1.00E-159
98
283
3
7557897
7558285
373
5.70E-214
99
389
3
10113399
10113509
103
4.60E-50
98
111
3
13624253
13624456
196
1.80E-105
99
204
3
13624253
13624456
196
1.80E-105
99
204
265
Chromosome
Stats
Name
Start
End
Score
E-value
%ID
Length
3
31758096
31758590
491
2.10E-284
100
495
3
31758602
31759890
1289
0
100
1289
4
251376
251476
101
7.80E-49
100
101
4
9117300
9117470
171
1.00E-93
100
171
4
9117478
9119123
1646
0
100
1646
4
9119130
9119333
204
2.20E-113
100
204
4
9131921
9132124
204
2.20E-113
100
204
4
9131924
9132127
204
2.20E-113
100
204
4
9132131
9133776
1646
0
100
1646
4
9133784
9133954
171
1.00E-93
100
171
4
9142065
9142886
806
0
100
822
4
18018159
18018476
278
8.70E-155
97
318
4
23435139
23435309
167
2.40E-91
99
171
4
23435317
23436961
1590
0
99
1646
4
23436968
23437171
188
7.40E-104
98
204
5
20888563
20889265
699
0
100
703
5
20889269
20889505
229
2.70E-128
99
237
5
20889775
20889926
137
1.80E-73
97
153
5
20890614
20891646
988
0
99
1036
6
1094075
1094424
326
1.80E-191
98
350
6
1094436
1095606
1136
0
99
1172
6
1106818
1106940
115
0
98
123
6
12743717
12744122
382
1.10E-217
98
410
6
23569084
23569663
568
0
99
580
6
23569664
23569926
243
0
98
263
6
23577394
23577544
143
4.80E-77
99
151
6
23585786
23586071
274
4.20E-155
99
286
6
23586206
23587732
1512
0
100
1528
6
23588439
23588591
141
7.50E-76
98
153
6
23588861
23589097
237
4.70E-133
100
237
6
23589101
23590389
1265
0
100
1289
6
23590401
23590895
491
2.10E-284
100
495
266
Chromosome
Stats
Name
Start
End
Score
E-value
%ID
Length
6
24553703
24554031
306
3.40E-171
98
330
6
28261114
28261254
129
1.50E-65
98
141
7
4475047
4475153
85
2.70E-39
95
109
7
14240881
14241084
204
2.20E-113
100
204
7
14241088
14242733
1646
0
100
1646
7
14242741
14242911
171
1.00E-93
100
171
8
9254292
9254495
204
2.20E-113
100
204
8
9254502
9256147
1642
0
100
1646
8
9256155
9256325
171
1.00E-93
100
171
8
9264391
9265211
798
0
99
822
8
9272685
9272835
151
8.20E-82
100
151
8
16395631
16395888
218
3.10E-293
96
258
8
16395985
16396295
249
3.10E-293
95
313
8
22193027
22193197
171
1.00E-93
100
171
8
22193205
22194850
1638
0
100
1646
8
25291999
25292132
107
1.50E-53
95
135
9
11944700
11945740
976
0
98
1044
9
11945748
11945918
167
2.40E-91
99
171
9
14504571
14504774
204
2.20E-113
100
204
9
14504781
14506426
1646
0
100
1646
9
14506434
14506604
171
1.00E-93
100
171
9
16352174
16352287
98
1.30E-48
96
114
10
7814271
7814463
193
1.20E-102
100
193
10
7814893
7815005
113
5.50E-56
100
113
10
10473642
10473845
204
2.20E-113
100
204
10
10473852
10475497
1630
0
100
1646
10
10475505
10475675
171
1.00E-93
100
171
10
10526579
10527073
491
2.10E-284
100
495
10
10527085
10528373
1277
0
100
1289
10
10528377
10528613
237
4.70E-133
100
237
10
10528883
10529035
141
7.50E-76
98
153
267
Chromosome
Stats
Name
Start
End
Score
E-value
%ID
Length
10
10529741
10531268
1512
0
100
1528
10
10531403
10531688
278
1.70E-157
99
286
10
10539947
10540097
151
8.20E-82
100
151
10
10547565
10548386
810
0
100
822
10
10556447
10556617
171
1.00E-93
100
171
10
10556625
10558270
1606
0
99
1646
10
10558277
10558480
196
1.30E-108
99
204
10
10558280
10558483
196
1.30E-108
99
204
10
11458019
11458127
90
7.20E-43
95
110
10
11458140
11458295
129
1.20E-65
96
157
10
18586124
18586260
111
7.90E-55
95
139
10
20132992
20133236
241
4.30E-133
100
245
10
21006220
21006390
159
1.40E-86
98
171
10
21006402
21007680
1192
0
98
1280
10
22441033
22442031
971
0
99
999
10
22442035
22442238
204
2.20E-113
100
204
11
3496168
3496272
97
9.90E-46
98
105
11
10835550
10835666
113
1.30E-56
99
117
11
18857084
18858119
812
0
95
1036
11
18900791
18901042
236
0
98
252
11
18901179
18901466
232
2.30E-129
95
288
12
4566706
4566867
150
2.10E-78
98
162
12
5609877
5610371
479
3.00E-277
99
495
12
5610383
5611671
1261
0
99
1289
12
5611675
5611911
229
2.70E-128
99
237
12
5612181
5612333
149
1.30E-80
99
153
12
5613041
5614568
1492
0
99
1528
12
5614703
5614870
160
3.70E-85
99
168
12
5640464
5640614
151
8.20E-82
100
151
12
5651219
5652040
790
0
99
822
12
8527031
8527540
471
1.30E-269
98
511
12
8527545
8528030
410
1.00E-234
96
494
12
8554381
8554509
101
4.50E-50
95
129
268
Chromosome
Stats
Name
Start
End
Score
E-value
%ID
Length
12
11285335
11285829
471
1.70E-272
99
495
12
11285841
11286592
740
0
100
752
12
11410564
11410734
159
1.40E-86
98
171
12
11410742
11411788
971
0
98
1047
12
13350937
13351113
169
6.70E-113
99
177
12
13389650
13390120
448
9.00E-256
99
472
12
13392730
13392856
123
6.00E-62
99
127
12
13410973
13411133
157
3.20E-82
99
161
12
16609595
16610204
578
0
99
610
12
16630225
16630834
578
0
99
610
269
Table B-1. Rice tungro bacilliform virus (RTBV) alignments in the rice genome
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
148
750
1
6201518
6202111
1.40E-10
57
641
239
713
1
22956721
22957201
1.90E-07
59
507
309
513
1
1984826
1985030
6.30E-06
59
217
328
637
1
758758
759064
2.30E-101
59
333
1089
2121
1
757732
758766
2.30E-101
61
1107
1254
1402
1
831282
831423
6.00E-70
60
153
1537
2295
1
5977827
5978578
2.70E-06
58
810
1810
2025
1
757371
757583
5.60E-72
62
234
1842
2567
1
2030981
2031701
6.90E-07
58
772
1868
2567
1
615944
616633
3.80E-07
59
743
1868
2603
1
33278771
33279494
1.70E-05
59
786
2335
2453
1
6222511
6222630
2.00E-09
63
127
2338
2449
1
757755
757859
8.10E-71
64
114
2354
3813
1
11561513
11562975
5.70E-77
56
1570
2734
4247
1
26530645
26532156
1.50E-06
57
1635
2943
3110
1
18311187
18311357
4.30E-06
61
179
3023
4265
1
13958472
13959711
7.00E-06
56
1336
3213
4020
1
6286912
6287711
1.40E-10
58
865
3243
4155
1
18337610
18338516
4.30E-06
58
976
3297
3539
1
30654233
30654473
1.80E-05
59
258
3383
4302
1
6286409
6287321
6.10E-06
57
989
3386
4268
1
13459451
13460325
5.70E-09
59
952
3462
4217
1
30663533
30664287
1.80E-05
58
814
3677
3945
1
33396727
33396992
6.00E-05
59
292
4354
5831
1
753717
755196
2.30E-101
62
1541
4354
5831
1
11533296
11534775
5.70E-77
62
1546
4492
5581
1
5191893
5192980
3.10E-53
62
1136
4988
5229
1
22957931
22958168
1.90E-07
61
258
270
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
5106
5229
1
2031666
2031794
6.90E-07
65
134
5124
5229
1
13957529
13957631
7.00E-06
71
112
5589
5829
1
5192963
5193206
3.10E-53
61
249
32
622
2
30945109
30945691
5.10E-06
59
621
33
611
2
28437321
28437902
3.70E-05
59
617
36
622
2
33317652
33318239
1.30E-06
59
631
146
445
2
29145374
29145677
1.10E-05
58
321
151
862
2
296658
297382
1.80E-05
58
767
211
611
2
29328648
29329044
5.70E-06
62
426
221
628
2
24378428
24378829
6.50E-05
61
435
228
611
2
31610940
31611313
3.70E-05
62
408
259
622
2
9784310
9784666
7.50E-09
62
392
309
448
2
25476658
25476799
2.20E-08
63
149
328
496
2
9089130
9089291
1.10E-84
62
177
1553
2160
2
9090658
9091259
1.10E-84
61
650
1805
1954
2
25476674
25476825
5.80E-07
60
159
1810
2025
2
9091373
9091585
5.00E-71
62
235
1835
2094
2
9804630
9804889
4.10E-06
58
279
1835
2226
2
9804970
9805353
3.90E-09
59
424
1843
2503
2
8787412
8788072
2.20E-78
57
721
1894
2046
2
247009
247164
1.80E-05
62
166
2164
2561
2
9761096
9761499
7.50E-09
58
426
2338
2449
2
9091097
9091201
2.80E-69
63
114
3067
4037
2
25732159
25733121
1.10E-05
57
1040
3093
4087
2
33410029
33411015
6.50E-09
57
1066
3099
3717
2
33333849
33334463
1.30E-06
57
664
3227
4020
2
9784246
9785032
3.90E-09
58
843
3381
3824
2
25473046
25473488
7.90E-06
60
472
3639
5892
2
8789064
8791322
2.20E-78
60
2375
271
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
3694
4253
2
25473284
25473843
2.20E-08
61
607
3695
4894
2
29125260
29126448
1.10E-05
57
1284
3696
3873
2
9103002
9103187
1.50E-08
61
197
3877
4139
2
9088774
9089037
7.50E-73
59
281
4354
5812
2
9094213
9095675
1.10E-84
63
1526
4564
4889
2
210471
210792
1.80E-05
59
351
4581
4816
2
30962151
30962389
5.10E-06
60
254
4618
4819
2
9760712
9760911
6.20E-07
59
214
5132
5243
2
9761348
9761462
5.00E-08
65
124
115
622
3
34597692
34598195
4.20E-08
59
538
155
246
3
11788408
11788504
5.50E-06
65
103
1843
2830
3
14547569
14548544
4.30E-05
57
1054
1877
2090
3
35663597
35663810
1.20E-06
62
229
1986
2566
3
13574386
13574964
4.40E-11
60
628
2102
2603
3
35697061
35697564
1.20E-06
58
546
3144
3950
3
11893773
11894575
5.50E-06
59
871
3518
4140
3
2625906
2626523
2.20E-05
59
667
3527
3916
3
34586722
34587122
4.20E-08
60
427
3669
4235
3
33515961
33516525
4.30E-06
60
611
3759
3908
3
23890397
23890546
3.00E-15
60
156
4395
4823
3
35698436
35698867
2.20E-06
58
457
4685
5520
3
23902815
23903648
3.00E-15
60
884
4962
5229
3
35698604
35698874
1.20E-06
61
289
5107
5426
3
13573997
13574316
4.40E-11
60
342
155
636
4
30151197
30151675
2.20E-05
61
520
219
430
4
3049602
3049805
2.10E-05
61
223
315
410
4
20110151
20110240
1.80E-05
70
101
315
627
4
28049374
28049691
3.10E-62
61
336
272
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
544
991
4
18165592
18166039
2.40E-76
57
483
1089
2160
4
9551375
9552444
1.80E-108
61
1149
1096
2303
4
18165456
18166669
3.60E-104
59
1295
1137
1891
4
5696447
5697209
9.80E-09
57
831
1226
2160
4
20485795
20486718
1.40E-94
61
996
1810
2025
4
20486832
20487044
4.10E-68
61
235
1843
2503
4
18166632
18167292
2.40E-76
57
721
2338
2449
4
9551433
9551537
3.30E-77
63
114
2338
2449
4
20486557
20486660
2.20E-66
63
115
2342
2495
4
28557805
28557964
5.60E-06
61
168
2490
4260
4
28497921
28499689
5.60E-06
56
1912
2715
4100
4
16315671
16317056
1.10E-08
58
1493
2991
3241
4
20535833
20536088
7.00E-22
59
268
3051
3951
4
20130181
20131076
1.80E-05
58
969
3181
3334
4
5715241
5715397
8.20E-07
62
164
3408
3519
4
9468182
9468296
2.20E-24
61
119
3440
4062
4
472185
472807
1.50E-06
59
669
3639
4949
4
20488508
20489818
1.40E-94
59
1402
3639
5829
4
21529060
21531250
2.80E-72
60
2317
3639
5892
4
18168284
18170542
3.60E-104
60
2387
3641
5831
4
9547394
9549583
1.80E-108
61
2320
3788
3883
4
18173341
18173436
4.90E-21
66
101
3855
3976
4
20491519
20491638
3.60E-22
64
127
4027
4194
4
16333240
16333413
1.10E-08
60
181
4027
5829
4
28062269
28064060
3.10E-62
60
1907
4057
4195
4
18228452
18228591
4.90E-21
62
151
4650
5052
4
5692002
5692405
9.80E-09
63
431
4816
5354
4
3077892
3078446
2.10E-05
59
577
5001
5829
4
20489860
20490685
1.40E-94
63
862
5796
5937
4
21604058
21604205
2.80E-72
61
157
273
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
32
502
5
19929379
19929849
8.60E-05
60
505
157
623
5
18499119
18499579
1.10E-05
60
499
216
893
5
29259527
29260204
8.30E-06
59
734
259
713
5
21285350
21285798
4.30E-05
60
480
291
385
5
18102344
18102444
8.40E-100
66
106
294
613
5
18057240
18057562
1.50E-101
59
346
315
490
5
23533930
23534105
3.00E-06
61
190
328
496
5
18133836
18133997
2.20E-100
63
177
328
496
5
18922184
18922345
2.10E-92
63
178
328
546
5
18143566
18143786
3.00E-101
62
237
328
635
5
18145225
18145533
2.30E-100
58
331
397
533
5
19044547
19044675
2.30E-90
63
145
764
988
5
18145244
18145473
3.30E-99
59
241
1094
1239
5
18145201
18145349
7.70E-70
60
155
1096
2121
5
18134141
18135168
1.50E-101
60
1095
1096
2160
5
18920979
18922040
2.10E-92
60
1139
1096
2168
5
18142410
18143481
3.00E-101
61
1150
1810
2025
5
18135317
18135529
6.50E-74
61
233
1810
2025
5
18142094
18142306
3.70E-72
62
234
1810
2025
5
18920653
18920865
2.30E-65
62
235
1887
2008
5
6694847
6694975
9.20E-06
64
134
2035
2203
5
19927884
19928051
8.60E-05
61
181
2105
2594
5
29320886
29321369
8.50E-05
59
523
2131
2671
5
6690689
6691233
9.20E-06
59
589
2338
2531
5
18142398
18142582
2.00E-70
60
203
3071
4108
5
23512535
23513566
3.00E-06
57
1115
3257
3361
5
18996224
18996330
5.10E-61
63
113
3346
4258
5
14064381
14065288
2.90E-06
58
987
3348
3939
5
19922490
19923074
8.60E-05
58
631
274
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
3570
4268
5
20912552
20913251
4.10E-05
59
744
3639
4836
5
18139433
18140630
4.60E-48
59
1293
3639
5829
5
18136993
18139183
1.50E-101
60
2319
3639
5829
5
18917006
18919189
2.10E-92
60
2325
3708
3904
5
6661678
6661868
9.20E-06
61
205
3708
4253
5
11705942
11706483
1.30E-06
60
583
3932
4139
5
18143879
18144085
2.00E-70
60
220
3960
4096
5
23670892
23671037
1.10E-33
64
149
3994
4139
5
18145626
18145761
1.70E-70
62
151
4354
5831
5
18128727
18130206
3.00E-101
62
1548
4395
4819
5
11688525
11688947
6.40E-05
57
453
4402
5127
5
23633498
23634212
1.10E-33
64
763
4581
5493
5
20143828
20144730
1.50E-16
59
967
4815
5038
5
18159993
18160209
2.30E-26
61
235
4850
5106
5
19896973
19897230
8.60E-05
60
280
4962
5229
5
11688511
11688779
4.80E-06
60
289
4982
5259
5
29260148
29260423
8.30E-06
59
296
5007
5243
5
11689172
11689407
1.30E-06
61
258
5288
5418
5
29307394
29307524
8.30E-06
64
138
32
608
6
14893396
14893967
2.90E-06
60
618
211
883
6
25569540
25570205
5.30E-05
59
729
219
448
6
5110950
5111183
7.10E-71
62
252
328
636
6
1712440
1712741
1.10E-26
59
330
358
615
6
12627761
12628018
3.70E-12
59
275
544
728
6
12622451
12622633
2.00E-78
61
195
544
728
6
10574512
10574694
6.10E-32
61
196
1091
1332
6
25525728
25525976
5.30E-05
60
259
1096
1959
6
12622315
12623172
1.80E-106
61
922
1096
1959
6
10574376
10575234
1.70E-58
61
922
275
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
1096
2160
6
1711374
1712436
1.10E-26
61
1141
1625
1722
6
12635020
12635120
1.90E-12
64
106
1843
2503
6
10575564
10576224
1.70E-58
57
718
3452
4095
6
6877109
6877737
1.10E-05
59
682
3564
4145
6
10199335
10199925
4.60E-05
60
634
3639
5892
6
12625156
12627414
1.80E-106
60
2386
3699
4143
6
5052000
5052439
7.10E-71
56
474
3734
3838
6
5089438
5089546
1.40E-70
64
113
3925
4258
6
1640638
1640970
1.10E-26
59
363
4354
5831
6
4978177
4979656
7.10E-71
62
1541
4397
5018
6
10577988
10578604
1.70E-58
65
649
4421
5829
6
1713974
1715380
2.80E-73
63
1475
4476
5415
6
25569260
25570190
2.90E-06
57
1004
4685
5520
6
12718770
12719603
4.30E-40
60
887
5389
5829
6
4974998
4975438
1.60E-12
63
463
7189
7350
6
5009767
5009930
1.60E-12
61
175
156
370
7
23166889
23167095
1.20E-07
60
225
237
587
7
6671852
6672196
4.50E-26
59
374
328
496
7
2781355
2781516
1.10E-105
63
176
328
496
7
6646983
6647144
3.80E-24
63
178
368
728
7
17896119
17896480
7.70E-80
58
384
1096
1959
7
17895579
17896437
1.90E-105
61
916
1096
2160
7
2781660
2782722
1.10E-105
60
1136
1096
2168
7
6645767
6646839
3.80E-24
60
1146
1097
1338
7
23158290
23158533
2.00E-08
60
260
1131
1231
7
17908536
17908641
4.00E-80
68
108
1635
1754
7
24556947
24557065
1.00E-07
63
131
1810
2025
7
2782836
2783048
6.80E-77
61
235
1843
2503
7
17894589
17895249
1.90E-105
57
719
276
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
1846
2025
7
6652936
6653122
4.50E-26
61
202
2019
2321
7
6671770
6672072
3.40E-25
61
334
2338
2449
7
2782560
2782664
9.90E-76
63
114
2436
2564
7
17998630
17998755
2.00E-77
63
136
2438
2540
7
6501738
6501843
1.00E-22
64
112
3082
4082
7
25060531
25061532
9.80E-08
58
1086
3254
3572
7
6651736
6652043
4.50E-26
60
332
3315
4272
7
23198943
23199905
2.00E-08
58
1032
3315
4272
7
24560295
24561257
1.00E-07
58
1033
3476
3727
7
6504309
6504556
4.00E-22
57
265
3639
4844
7
6650275
6651472
4.50E-26
59
1286
3639
5892
7
17891339
17893597
1.90E-105
60
2380
3641
5831
7
2784514
2786702
1.10E-105
60
2314
3658
4248
7
17534172
17534762
8.40E-07
58
626
3692
4015
7
6521645
6521976
3.80E-24
60
356
4663
4870
7
2780861
2781073
4.40E-10
70
221
4842
5130
7
17606853
17607138
8.40E-07
61
314
4985
5229
7
23228684
23228929
2.00E-08
61
265
5143
5382
7
6543905
6544139
3.80E-22
59
258
187
493
8
1153826
1154123
1.50E-06
60
331
3519
4287
8
1154237
1154999
1.50E-06
58
822
3674
4139
8
1392447
1392905
1.80E-09
61
498
5035
5436
8
1393978
1394382
1.80E-09
59
425
2085
2568
8
4225542
4226025
6.30E-20
57
522
1096
2160
8
4245496
4246558
6.30E-20
60
1140
328
452
8
4246744
4246863
6.30E-20
65
131
4575
5831
8
4249016
4250264
9.10E-69
63
1296
4575
4909
8
4252558
4252889
1.20E-15
67
350
207
424
8
4274049
4274278
1.30E-66
60
243
277
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
405
622
8
4295611
4295828
9.10E-69
64
232
1097
1694
8
4295628
4296235
1.40E-65
57
654
3649
4061
8
4314871
4315284
2.10E-66
58
445
2459
2608
8
4314997
4315138
3.30E-61
61
157
3674
3804
8
11133524
11133645
3.60E-24
63
135
3639
5892
8
11152811
11155069
1.70E-106
60
2377
1843
2503
8
11156061
11156721
3.10E-79
57
717
1091
2386
8
11156619
11157907
1.70E-106
58
1372
2084
2685
8
11157386
11157984
8.80E-81
58
650
334
728
8
11157590
11157985
3.10E-79
58
426
1096
2160
8
11159035
11160097
5.10E-110
60
1136
2338
2529
8
11159935
11160125
4.90E-79
60
202
1810
2025
8
11160211
11160423
1.30E-79
61
235
3639
5831
8
11161887
11164077
5.10E-110
61
2322
1096
2160
8
11167145
11168207
2.20E-109
60
1136
2338
2529
8
11168045
11168235
2.20E-75
60
202
1810
2025
8
11168321
11168533
3.10E-74
61
235
3639
5831
8
11169997
11172187
2.20E-109
61
2319
313
615
8
11172552
11172856
6.40E-113
58
320
1096
3367
8
11174169
11176443
1.80E-111
57
2434
1096
3367
8
11181414
11183688
6.40E-113
58
2437
328
855
8
11188275
11188793
1.10E-109
58
572
1096
2160
8
11188580
11189642
1.10E-106
61
1137
2338
2449
8
11189480
11189584
2.40E-104
63
114
1810
2025
8
11189756
11189968
7.90E-77
61
235
3641
4824
8
11191433
11192609
1.10E-49
58
1271
3641
5831
8
11196272
11198460
5.70E-110
60
2318
1810
2025
8
11199926
11200138
8.10E-78
62
234
3639
5831
8
11201328
11203518
6.40E-113
60
2319
328
615
8
11203885
11204180
1.10E-109
60
314
278
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
1096
3367
8
11209154
11211428
7.90E-109
58
2438
1096
3367
8
11213335
11215609
5.40E-110
58
2436
1096
3367
8
11217516
11219790
7.90E-109
58
2436
1096
3367
8
11221697
11223971
2.10E-109
58
2436
1096
3367
8
11234234
11236507
5.70E-110
57
2443
4019
5831
8
11237480
11239291
5.40E-110
61
1911
2069
2255
8
11256622
11256807
6.20E-25
60
200
1096
1946
8
20043892
20044739
5.10E-23
61
909
1843
2503
8
20045088
20045748
1.80E-68
57
716
4447
5892
8
20047523
20048974
1.80E-68
62
1515
3167
3720
8
21073380
21073934
1.50E-24
57
597
5002
5178
8
21073830
21074017
6.00E-26
61
196
3847
4068
8
21102295
21102520
6.00E-26
60
238
3639
5829
8
21124354
21126543
6.30E-105
60
2332
92
432
8
21126363
21126699
2.30E-73
58
368
1810
2025
8
21128005
21128212
4.00E-76
62
229
1096
2121
8
21128366
21129393
6.30E-105
61
1097
322
624
8
21129407
21129709
6.30E-105
59
328
3378
3478
8
24738196
24738292
5.50E-23
65
105
3192
3324
8
24772188
24772318
5.50E-23
63
143
4354
5831
8
24785364
24786843
2.00E-101
63
1542
1810
2025
8
24789018
24789230
1.20E-72
62
234
1096
2160
8
24789344
24790406
2.00E-101
61
1140
1602
2449
8
24789402
24790245
3.50E-71
56
913
328
496
8
24790550
24790711
2.00E-101
63
178
3994
4139
8
24790804
24790939
4.70E-72
62
151
3902
5892
8
27066770
27068766
1.40E-78
61
2089
328
496
9
14502111
14502272
6.30E-21
62
177
328
496
9
16160807
16160968
1.10E-102
63
178
279
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
328
855
9
14494561
14495079
4.60E-22
58
574
1096
2041
9
14502416
14503369
4.60E-22
60
1015
1096
2121
9
14494866
14495893
6.30E-23
60
1096
1096
2160
9
16161112
16162174
1.10E-102
60
1137
1230
2386
9
1114430
1115586
1.10E-104
59
1229
1833
2025
9
16162280
16162479
2.70E-73
61
213
1843
2503
9
1113872
1114532
1.50E-79
57
719
2338
2529
9
16162012
16162202
2.00E-72
60
205
2646
4098
9
9821201
9822654
4.30E-05
57
1569
2776
2910
9
16148009
16148149
3.90E-72
63
148
2847
2997
9
16081701
16081847
5.30E-73
62
160
3639
5892
9
1110621
1112880
1.10E-104
60
2376
3900
5143
9
17970610
17971846
1.40E-05
57
1333
3994
4139
9
16160579
16160714
5.30E-73
63
153
3994
4139
9
14501883
14502018
6.30E-23
62
153
4019
5831
9
16164297
16166108
1.10E-102
61
1910
4397
5196
9
14491914
14492699
4.00E-33
63
836
4691
5153
9
5048518
5048984
4.30E-05
60
494
74
171
10
22506606
22506704
6.70E-19
64
105
211
593
10
1977831
1978206
7.70E-09
62
408
261
713
10
14535789
14536234
7.90E-06
60
485
291
400
10
9601961
9602075
8.10E-22
63
121
328
496
10
9157705
9157866
1.10E-94
63
177
328
496
10
9692802
9692964
5.70E-23
62
177
358
615
10
14044790
14045047
3.40E-23
59
273
544
728
10
21610241
21610423
9.50E-80
61
195
735
849
10
14084694
14084817
2.10E-68
62
128
834
996
10
22472347
22472514
6.70E-19
61
178
1096
2160
10
9693107
9694168
5.70E-23
60
1140
280
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
1106
1298
10
14121168
14121363
1.10E-68
62
211
1144
1256
10
1976967
1977091
7.70E-09
63
128
1230
1959
10
21609701
21610425
8.10E-107
62
768
1230
1959
10
14042108
14042832
3.40E-23
61
768
1230
2386
10
22388217
22389373
6.70E-19
59
1229
1351
2160
10
9155211
9156018
1.10E-94
61
866
1801
2603
10
5524121
5524919
1.70E-11
59
868
1810
2079
10
9154830
9155097
2.00E-71
61
292
1843
2503
10
21608711
21609371
8.10E-107
57
719
1843
2503
10
14041118
14041778
3.40E-23
57
719
1998
3515
10
19006380
19007899
4.20E-05
56
1628
2000
2572
10
1976140
1976713
7.70E-09
59
619
2038
2595
10
677303
677864
7.30E-06
59
602
3177
3336
10
14128039
14128202
1.10E-66
61
174
3246
3370
10
21536524
21536652
1.20E-22
62
137
3452
4099
10
5523972
5524615
8.40E-06
58
686
3639
5892
10
21605461
21607719
8.10E-107
60
2378
3644
3896
10
14504249
14504505
7.90E-06
63
273
3708
4140
10
1976259
1976693
2.60E-08
60
470
3744
4139
10
9157959
9158353
1.40E-72
59
429
3901
4036
10
14498476
14498612
7.90E-06
61
148
4019
5808
10
9151251
9153042
1.10E-94
61
1893
4394
5229
10
635883
636712
7.30E-06
56
898
4397
5892
10
14045394
14046886
1.10E-68
63
1560
4499
4932
10
14047012
14047434
1.30E-23
66
446
4598
5153
10
6236045
6236600
4.30E-05
58
592
5152
5303
10
5496770
5496911
1.70E-11
65
159
3
787
11
26839202
26839983
3.80E-07
58
844
14
636
11
4450337
4450960
8.20E-06
59
674
281
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
149
640
11
1954440
1954939
5.00E-08
61
537
259
622
11
324000
324357
2.20E-05
62
387
267
477
11
9542918
9543127
8.30E-74
59
223
291
565
11
1082170
1082444
2.80E-05
63
293
307
646
11
25621398
25621742
1.50E-08
61
371
321
647
11
22293263
22293589
2.60E-05
60
350
332
480
11
1455334
1455480
5.70E-05
62
156
1096
2306
11
25644826
25646044
7.80E-26
59
1298
1122
1228
11
19332995
19333094
2.00E-05
65
114
1230
2386
11
9603055
9604211
1.70E-24
59
1230
1407
1581
11
5035110
5035275
1.70E-61
61
184
1625
2594
11
22288636
22289598
2.60E-05
57
1037
1810
2025
11
9592313
9592525
8.30E-74
62
235
1854
2295
11
25621298
25621743
5.10E-08
59
475
3124
4037
11
27889790
27890696
1.70E-05
58
979
3207
3717
11
25728814
25729327
7.80E-26
58
554
3246
4255
11
27771435
27772440
9.60E-05
57
1089
3392
4140
11
25623213
25623954
1.50E-08
58
797
3408
4037
11
1450285
1450900
5.70E-05
59
668
3641
5892
11
9593991
9596247
8.30E-74
60
2381
3666
4156
11
4452192
4452683
8.20E-06
58
529
3847
4100
11
1091192
1091440
2.80E-05
60
270
4327
4437
11
22185305
22185412
2.60E-05
64
114
4338
5829
11
11632973
11634468
3.40E-63
61
1563
4415
5828
11
5065846
5067254
1.70E-61
62
1478
4598
5154
11
14764845
14765401
9.80E-08
60
598
4749
5069
11
27727126
27727451
9.60E-05
59
352
4850
5493
11
19323016
19323657
2.00E-05
58
683
5034
5166
11
25626507
25626637
1.50E-08
61
136
5606
5758
11
27866157
27866302
1.70E-05
61
161
282
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
7019
7116
11
11579301
11579397
3.40E-63
66
105
21
535
12
18995810
18996334
2.20E-05
59
549
34
601
12
5491369
5491934
1.50E-06
60
610
42
165
12
25754278
25754401
2.80E-99
65
135
94
777
12
1872204
1872878
6.20E-07
59
733
202
359
12
4576181
4576344
5.20E-77
60
169
328
452
12
22965076
22965195
1.30E-22
65
132
544
728
12
25812807
25812989
9.80E-74
61
195
544
728
12
17863728
17863910
3.70E-42
61
195
1096
2121
12
22963863
22964890
1.30E-22
61
1101
1230
1687
12
17863726
17864186
2.40E-59
62
478
1230
2388
12
25812805
25813964
2.80E-99
59
1236
1477
1584
12
19449318
19449425
4.10E-18
63
117
1814
2566
12
22216478
22217227
9.80E-05
58
809
1843
2503
12
25813860
25814520
9.80E-74
57
721
1868
2571
12
17560718
17561426
9.80E-08
59
768
1901
2054
12
17901476
17901629
3.30E-10
62
171
1911
2043
12
4571307
4571436
5.20E-77
61
138
1972
2347
12
17925099
17925471
1.30E-11
58
396
2533
2685
12
22902354
22902503
1.30E-22
61
162
3246
4184
12
518117
519062
1.50E-06
58
1018
3291
3481
12
4504668
4504854
1.80E-78
61
200
3440
4299
12
22277665
22278519
7.50E-07
58
930
3651
5892
12
4594578
4596829
1.80E-78
60
2367
3668
3796
12
22190743
22190868
9.80E-05
63
132
4021
5829
12
25117107
25118916
7.10E-74
61
1913
4397
4816
12
25811456
25811867
7.40E-11
64
440
4397
5829
12
26510705
26512129
5.40E-69
63
1492
4397
5892
12
25816386
25817878
2.80E-99
62
1557
283
RTBV
Rice
Stats
Start
End
Chr.
Start
End
E-value
% Identity
Length
4581
5493
12
19479869
19480773
1.10E-18
59
970
4852
5892
12
17864171
17865217
2.40E-59
62
1086
284
Table B-2. RNA viral homologies in the rice nuclear genome
Chr
Rice
Start
Length
Stats
E-Value
Viral homology
End
% Identity
1
2469482
1
2469808
354
2.30E-05
62
RGSV (NC_002328)
11464345
1
11464669
343
6.00E-06
62
RGSV (NC_002328)
25700098
25700455
387
6.00E-06
62
RGSV (NC_002328)
1
26530760
26531130
395
9.00E-05
61
RGSV (NC_002328)
1
28679419
28679805
413
6.40E-05
61
1
32150912
32151379
504
2.70E-06
60
1
38531674
38531963
311
4.60E-05
62
RGSV (NC_002328)
2
12524933
12525247
325
3.00E-06
62
RGSV (NC_002328)
RBSDV
(NC_003735)
RBSDV
(NC_003735)
2
12525835
12526173
360
7.80E-07
62
RGSV (NC_002328)
2
18870105
18870616
550
7.60E-05
61
OSE (NC_007647)
2
21461054
21461542
521
8.40E-05
59
OSE (NC_007647)
3
18200914
18201437
554
1.30E-07
59
RGSV (NC_002325)
3
25929928
25930244
337
2.30E-05
62
RGSV (NC_002328)
3
28899384
28899595
234
2.40E-05
63
3
28918522
28918803
295
2.40E-05
60
4
16316068
16317049
1057
5.40E-05
58
OSE (NC_007647)
4
26234062
26234407
377
1.20E-05
62
RGSV (NC_002328)
5
5735049
5735249
215
4.90E-09
65
RGSV (NC_002328)
4.90E-09
65
RGSV (NC_002328)
RBSDV
(NC_003735)
RBSDV
(NC_003735)
5
5751371
5751545
184
5
11692147
11692544
420
9.00E-05
60
RGSV (NC_002328)
6
6644000
6645675
1800
1.20E-05
56
RGSV (NC_002325)
2.00E-05
63
RSV (NC_003753)
6
12923333
12923600
284
6
14893394
14893780
428
9.00E-05
61
RGSV (NC_002328)
6
15878801
15879103
318
3.00E-06
63
RGSV (NC_002328)
6
29536650
29537081
464
8.40E-07
59
6
29591331
29591794
500
8.40E-07
60
7
18304362
18304614
268
9.00E-05
63
RBSDV
(NC_003735)
RBSDV
(NC_003735)
RGSV (NC_002328)
8
209536
209876
368
9.00E-05
61
RGSV (NC_002328)
8
1154316
1154673
386
6.00E-06
62
RGSV (NC_002328)
285
Chr
Rice
Start
End
Length
Stats
E-Value
% Identity
Viral homology
8
1390999
1391317
342
4.60E-05
62
RGSV (NC_002328)
8
1394984
1395358
399
4.00E-07
61
RGSV (NC_002328)
8
3548352
3548795
470
2.00E-07
60
RGSV (NC_002328)
8
8511475
8511561
92
1.70E-06
67
ORE (NC_007649)
8
8518853
8519786
1005
1.70E-06
58
ORE (NC_007649)
8
8602435
8602649
232
1.70E-06
63
ORE (NC_007649)
8
20497318
20497613
312
9.00E-05
63
RGSV (NC_002328)
8
23533493
23534077
626
5.60E-06
59
OSE (NC_007647)
8
23557095
23557877
837
5.60E-06
57
OSE (NC_007647)
9
9821130
9821963
904
1.20E-05
58
OSE (NC_007647)
9
10150703
10151069
393
6.00E-06
62
RGSV (NC_002328)
10
3468456
3468616
167
9.00E-05
69
RGSV (NC_002328)
10
10227825
10228578
808
1.10E-06
58
OSE (NC_007647)
10
15117266
15117621
379
9.00E-05
61
RSGV (NC_002328)
10
15516599
15516924
347
3.00E-06
62
RSGV (NC_002328)
11
322800
323380
623
2.40E-05
57
OSE (NC_007647)
11
323956
324388
465
2.40E-05
59
OSE (NC_007647)
11
20706041
20706329
297
7.70E-05
61
RSV (NC_003753)
11
24769846
24770400
588
9.00E-05
59
RGSV (NC_002328)
11
25902206
25902548
370
4.60E-05
62
RGSV (NC_002328)
11
27924348
27924813
498
3.80E-05
59
OSE (NC_007647)
12
4357548
4357776
237
2.00E-05
64
RSV (NC_003753)
OSE - Oryza sativa endornavirus; ORE - Oryza rufipogon endornavirus; RSV - Rice stripe virus; RBSDV - Rice black streaked dwarf
virus; RGSV-Rice grassy stunt virus
286
Table C-1. Bacillus cereus homologies in the rice nuclear genome
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
127
33591
33645
-
1
33566481
33566607
+
67
7.5E-47
88.19
13745
13871
-
1
33566481
33566607
+
67
7.5E-47
88.19
127
149705
149831
-
1
33566481
33566607
+
67
7.5E-47
88.19
127
283809
283935
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
304861
304987
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
318069
318195
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
327170
327296
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
334988
335186
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
609141
609267
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
822348
822474
-
1
33566481
33566607
+
67
2.9E-46
88.19
127
4651388
4651514
+
1
33566481
33566607
+
67
2.9E-46
88.19
127
33372
33486
-
1
33566640
33566753
+
44
7.5E-47
84.48
116
13598
13712
-
1
33566640
33566753
+
44
7.5E-47
84.48
116
149559
149672
-
1
33566640
33566753
+
44
7.5E-47
84.48
116
283663
283776
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
304715
304828
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
317923
318036
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
327024
327137
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
334842
335027
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
608995
609108
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
822202
822315
-
1
33566640
33566753
+
44
2.9E-46
84.48
116
4651547
4651660
+
1
33566640
33566753
+
44
2.9E-46
84.48
116
13576
13951
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
86467
86842
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
149537
149910
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
283641
284015
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
304693
305067
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
317901
318275
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
327002
327376
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
334820
335266
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
608973
609347
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
822180
822554
+
1
33567484
33567858
+
210
1.2E-114
88.74
382
4651308
4651682
-
1
33567484
33567858
+
210
1.2E-114
88.74
382
13617
13871
+
1
33567524
33567778
+
158
5E-84
90.31
258
33391
33645
+
1
33567524
33567778
+
158
5E-84
90.31
258
86507
86693
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
149577
149831
+
1
33567524
33567778
+
158
5E-84
90.31
258
304733
304918
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
317941
318126
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
327042
327227
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
334860
335045
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
287
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
122
609013
609133
+
1
33567524
33567644
+
66
1.8E-29
88.52
822220
822405
+
1
33567524
33567709
+
101
3.5E-50
88.36
189
4651457
4651642
-
1
33567524
33567709
+
101
3.5E-50
88.36
189
10630
10728
-
2
807711
807809
+
64
1.4E-28
91
100
30404
30502
-
2
807711
807809
+
64
1.4E-28
91
100
83748
83846
-
2
807711
807809
+
64
1.4E-28
91
100
146816
146914
-
2
807711
807809
+
64
1.4E-28
91
100
280922
281019
-
2
807711
807809
+
64
1.4E-28
91
100
10197
10315
-
2
808124
808242
+
79
2.1E-37
91.6
119
29971
30089
-
2
808124
808242
+
79
2.1E-37
91.6
119
83315
83433
-
2
808124
808242
+
79
2.1E-37
91.6
119
146383
146501
-
2
808124
808242
+
79
2.1E-37
91.6
119
280488
280606
-
2
808124
808242
+
79
2.1E-37
91.6
119
301538
301656
-
2
808124
808242
+
79
2.1E-37
91.6
119
314749
314867
-
2
808124
808242
+
79
2.1E-37
91.6
119
323848
323966
-
2
808124
808242
+
79
2.1E-37
91.6
119
331666
331784
-
2
808124
808242
+
79
2.1E-37
91.6
119
819027
819145
-
2
808124
808242
+
79
2.1E-37
91.6
119
4654717
4654835
+
2
808124
808242
+
79
2.1E-37
91.6
119
12879
12990
+
2
814495
814605
+
57
3.7E-24
87.18
117
32654
32764
+
2
814495
814605
+
56
1.5E-23
87.07
116
85770
85881
+
2
814495
814605
+
56
1.5E-23
87.07
116
148839
148949
+
2
814495
814605
+
57
3.7E-24
87.18
117
148853
148950
+
2
814495
814605
+
57
3.7E-24
87.18
117
282944
283053
+
2
814495
814604
+
56
1.5E-23
87.07
116
303996
304105
+
2
814495
814604
+
56
1.5E-23
87.07
116
317204
317313
+
2
814495
814604
+
56
1.5E-23
87.07
116
326305
326414
+
2
814495
814604
+
56
1.5E-23
87.07
116
334123
334232
+
2
814495
814604
+
56
1.5E-23
87.07
116
608276
608386
+
2
814495
814605
+
57
3.7E-24
87.18
117
821483
821593
+
2
814495
814605
+
57
3.7E-24
87.18
117
4652269
4652379
-
2
814495
814605
+
57
3.7E-24
87.18
117
148966
149072
+
2
814624
814729
+
62
3.1E-27
89.62
106
32916
33025
+
2
814764
814872
+
85
1.7E-42
94.5
109
86033
86142
+
2
814764
814872
+
85
1.7E-42
94.5
109
86033
86142
+
2
814764
814872
+
85
6.3E-42
94.5
109
149103
149211
+
2
814764
814872
+
85
1.7E-42
94.5
109
149121
149229
+
2
814764
814872
+
85
1.7E-42
94.5
109
304259
304367
+
2
814764
814872
+
85
1.7E-42
94.5
109
317467
317575
+
2
814764
814872
+
85
1.7E-42
94.5
109
326368
326476
+
2
814764
814872
+
85
1.7E-42
94.5
109
334386
334494
+
2
814764
814872
+
85
1.7E-42
94.5
109
288
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
608403
608511
+
2
814764
814872
+
85
1.7E-42
94.5
109
608539
608647
+
2
814764
814872
+
85
1.7E-42
94.5
109
821746
821854
+
2
814764
814872
+
85
1.7E-42
94.5
109
4652008
4652116
-
2
814764
814872
+
85
1.7E-42
94.5
109
13576
13951
+
2
815200
815574
+
179
4.3E-96
86.68
383
86467
86842
+
2
815200
815574
+
179
4.3E-96
86.68
383
149537
149910
+
2
815200
815574
+
179
4.3E-96
86.68
383
283641
284015
+
2
815200
815574
+
179
4.3E-96
86.68
383
304693
305067
+
2
815200
815574
+
179
4.3E-96
86.68
383
317901
318275
+
2
815200
815574
+
179
4.3E-96
86.68
383
327002
327376
+
2
815200
815574
+
179
4.3E-96
86.68
383
334820
335266
+
2
815200
815574
+
179
4.3E-96
86.68
383
608973
609347
+
2
815200
815574
+
179
4.3E-96
86.68
383
822180
822554
+
2
815200
815574
+
179
4.3E-96
86.68
383
4651308
4651682
-
2
815200
815574
+
179
4.3E-96
86.68
383
13618
13871
+
2
815241
815494
+
133
5.2E-69
87.94
257
33392
33645
+
2
815241
815494
+
133
5.2E-69
87.94
257
86509
86663
+
2
815241
815395
+
76
3.9E-35
87.18
156
149578
149831
+
2
815241
815494
+
133
5.2E-69
87.94
257
304734
304888
+
2
815241
815395
+
76
3.9E-35
87.18
156
317942
318096
+
2
815241
815395
+
76
3.9E-35
87.18
156
327043
327197
+
2
815241
815395
+
76
3.9E-35
87.18
156
334861
335015
+
2
815241
815395
+
76
3.9E-35
87.18
156
609014
609133
+
2
815241
815360
+
53
1.3E-21
85.95
121
822221
822375
+
2
815241
815395
+
76
3.9E-35
87.18
156
4651487
4651641
-
2
815241
815395
+
76
3.9E-35
87.18
156
10197
10315
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
10630
10728
+
2
14192081
14192179
+
68
4.9E-31
92
100
29971
30089
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
30404
30502
+
2
14192081
14192179
+
68
4.9E-31
92
100
83315
83433
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
83748
83846
+
2
14192081
14192179
+
68
4.9E-31
92
100
146383
146501
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
146816
146914
+
2
14192081
14192179
+
68
4.9E-31
92
100
280488
280606
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
280922
281019
+
2
14192081
14192179
+
68
4.9E-31
92
100
301538
301656
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
314749
314867
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
323848
323966
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
331666
331784
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
819027
819145
+
2
14191648
14191766
+
87
2.5E-42
93.28
119
4654717
4654835
-
2
14191648
14191766
+
87
2.5E-42
93.28
119
4347101
4347870
-
3
1817627
1818395
+
769
0
100
769
289
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
10192
10315
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
29966
30089
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
83310
83433
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
146379
146501
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
280484
280606
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
301534
301656
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
314745
314867
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
323844
323966
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
331662
331784
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
819023
819145
-
3
23618356
23618478
-
73
9.5E-34
89.6
125
4654717
4654839
+
3
23618356
23618478
-
73
9.5E-34
89.6
125
148966
149072
-
3
27564940
27565045
+
66
1.1E-29
90.57
106
12880
12989
-
3
27565065
27565174
+
50
6.5E-20
85.96
114
32653
32763
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
85770
85880
-
3
27565065
27565174
+
50
6.5E-20
85.96
114
148839
148948
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
148853
148949
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
282944
283053
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
303996
304105
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
317204
317313
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
326305
326414
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
334123
334232
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
608276
608385
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
821483
821592
-
3
27565065
27565174
+
51
1.6E-20
86.09
115
4652270
4652379
+
3
27565065
27565174
+
51
1.6E-20
86.09
115
12879
12990
-
3
31754647
31754757
-
53
1E-21
86.32
117
32653
32764
-
3
31754647
31754757
-
53
1E-21
86.32
117
85770
85881
-
3
31754647
31754757
-
52
4E-21
86.21
116
148839
148949
-
3
31754647
31754757
-
53
1E-21
86.32
117
148853
148950
-
3
31754647
31754757
-
53
1E-21
86.32
117
282944
283053
-
3
31754647
31754756
-
52
4E-21
86.21
116
303996
304105
-
3
31754647
31754756
-
52
4E-21
86.21
116
317204
317313
-
3
31754647
31754756
-
52
4E-21
86.21
116
326305
326414
-
3
31754647
31754756
-
52
4E-21
86.21
116
334123
334232
-
3
31754647
31754756
-
52
4E-21
86.21
116
608276
608386
-
3
31754647
31754757
-
53
1E-21
86.32
117
821483
821593
-
3
31754647
31754757
-
53
1E-21
86.32
117
4652269
4652379
+
3
31754647
31754757
-
53
1E-21
86.32
117
148966
149072
-
3
31754776
31754881
-
70
3.7E-32
91.51
106
32916
33025
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
86033
86142
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
290
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
149103
149211
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
149121
149229
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
304259
304367
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
317467
317575
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
326368
326476
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
334386
334494
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
608403
608511
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
608539
608647
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
821746
821854
-
3
31754916
31755024
-
93
1.4E-47
96.33
109
4652008
4652116
+
3
31754916
31755024
-
93
1.4E-47
96.33
109
13576
13951
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
86467
86842
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
149537
149910
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
283641
284015
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
304693
305067
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
317901
318275
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
327002
327376
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
334820
335266
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
608973
609347
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
822180
822554
-
3
31755352
31755726
-
210
1.2E-114
88.74
382
4651308
4651682
+
3
31755352
31755726
-
210
1.2E-114
88.74
382
13617
13871
-
3
31755392
31755646
-
158
5E-84
90.31
258
13617
13802
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
33391
33645
-
3
31755392
31755646
-
158
5E-84
90.31
258
33391
33576
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
86507
86693
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
149576
149761
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
149577
149831
-
3
31755392
31755646
-
158
5E-84
90.31
258
304733
304918
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
317941
318126
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
327042
327227
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
334860
335045
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
609013
609133
-
3
31755392
31755512
-
66
1.8E-29
88.52
122
822220
822405
-
3
31755392
31755577
-
101
3.5E-50
88.36
189
4651457
4651642
+
3
31755392
31755577
-
101
3.5E-50
88.36
189
13576
13951
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
13617
13871
-
3
31756524
31756778
-
158
5E-84
90.31
258
33391
33645
-
3
31756524
31756778
-
158
5E-84
90.31
258
86467
86842
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
149537
149910
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
149577
149831
-
3
31756524
31756778
-
158
5E-84
90.31
258
283641
284015
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
304693
305067
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
317901
318275
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
291
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
327002
327376
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
334820
335266
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
608973
609347
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
822180
822554
-
3
31756484
31756858
-
210
1.2E-114
88.74
382
4651308
4651682
+
3
31756484
31756858
-
210
1.2E-114
88.74
382
10197
10315
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
29971
30089
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
83315
83433
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
146383
146501
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
280488
280606
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
301538
301656
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
314749
314867
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
323848
323966
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
331666
331784
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
819027
819145
+
4
8907662
8907780
+
91
8.2E-45
94.12
119
4654717
4654835
-
4
8907662
8907780
+
91
8.2E-45
94.12
119
10630
10728
+
4
8908095
8908193
+
68
4.9E-31
92
100
30404
30502
+
4
8908095
8908193
+
68
4.9E-31
92
100
83748
83846
+
4
8908095
8908193
+
68
4.9E-31
92
100
146816
146914
+
4
8908095
8908193
+
68
4.9E-31
92
100
280922
281019
+
4
8908095
8908193
+
68
4.9E-31
92
100
12879
12990
+
4
8912461
8912571
+
53
1E-21
86.32
117
32653
32764
+
4
8912461
8912571
+
53
1E-21
86.32
117
85770
85881
+
4
8912461
8912571
+
52
4E-21
86.21
116
148839
148949
+
4
8912461
8912571
+
53
1E-21
86.32
117
148853
148950
+
4
8912461
8912571
+
53
1E-21
86.32
117
282944
283053
+
4
8912461
8912570
+
52
4E-21
86.21
116
303996
304105
+
4
8912461
8912570
+
52
4E-21
86.21
116
317204
317313
+
4
8912461
8912570
+
52
4E-21
86.21
116
326305
326414
+
4
8912461
8912570
+
52
4E-21
86.21
116
334123
334232
+
4
8912461
8912570
+
52
4E-21
86.21
116
608276
608386
+
4
8912461
8912571
+
53
1E-21
86.32
117
821483
821593
+
4
8912461
8912571
+
53
1E-21
86.32
117
4652269
4652379
-
4
8912461
8912571
+
53
1E-21
86.32
117
32916
33025
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
86033
86142
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
86033
86142
+
4
8912730
8912838
+
93
5.3E-47
96.33
109
148966
149072
+
4
8912590
8912695
+
70
3.7E-32
91.51
106
149103
149211
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
149121
149229
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
304259
304367
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
317467
317575
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
326368
326476
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
292
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
334386
334494
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
608403
608511
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
608539
608647
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
821746
821854
+
4
8912730
8912838
+
93
1.5E-47
96.33
109
4652008
4652116
-
4
8912730
8912838
+
93
1.5E-47
96.33
109
13576
13951
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
13617
13802
+
4
8913206
8913391
+
101
3.5E-50
88.36
189
33391
33645
+
4
8913206
8913460
+
158
5E-84
90.31
258
86467
86842
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
149537
149910
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
283641
284015
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
304693
305067
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
317901
318275
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
327002
327376
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
334820
335266
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
608973
609347
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
822180
822554
+
4
8913166
8913540
+
210
1.2E-114
88.74
382
4651308
4651682
-
4
8913166
8913540
+
210
1.2E-114
88.74
382
10197
10315
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
29971
30089
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
83315
83433
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
146383
146501
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
280488
280606
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
301538
301656
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
314749
314867
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
323848
323966
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
331666
331784
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
819027
819145
+
4
8984065
8984183
+
91
8.2E-45
94.12
119
4654717
4654835
-
4
8984065
8984183
+
91
8.2E-45
94.12
119
10630
10728
+
4
8984498
8984596
+
68
4.9E-31
92
100
30404
30502
+
4
8984498
8984596
+
68
4.9E-31
92
100
83748
83846
+
4
8984498
8984596
+
68
4.9E-31
92
100
146816
146914
+
4
8984498
8984596
+
68
4.9E-31
92
100
280922
281019
+
4
8984498
8984596
+
68
4.9E-31
92
100
10197
10315
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
29971
30089
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
83315
83433
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
146383
146501
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
280488
280606
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
301538
301656
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
314749
314867
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
323848
323966
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
331666
331784
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
293
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
819027
819145
+
4
9002493
9002611
+
91
8.2E-45
94.12
119
4654717
4654835
-
4
9002493
9002611
+
91
8.2E-45
94.12
119
10630
10728
+
4
9002926
9003024
+
64
1.4E-28
91
100
30404
30502
+
4
9002926
9003024
+
64
1.4E-28
91
100
83748
83846
+
4
9002926
9003024
+
64
1.4E-28
91
100
146816
146914
+
4
9002926
9003024
+
64
1.4E-28
91
100
280922
281019
+
4
9002926
9003024
+
64
1.4E-28
91
100
12879
12990
+
4
9007294
9007404
+
53
1E-21
86.32
117
32653
32764
+
4
9007294
9007404
+
53
1E-21
86.32
117
85770
85881
+
4
9007294
9007404
+
52
4E-21
86.21
116
148839
148949
+
4
9007294
9007404
+
53
1E-21
86.32
117
148853
148950
+
4
9007294
9007404
+
53
1E-21
86.32
117
282944
283053
+
4
9007294
9007403
+
52
4E-21
86.21
116
303996
304105
+
4
9007294
9007403
+
52
4E-21
86.21
116
317204
317313
+
4
9007294
9007403
+
52
4E-21
86.21
116
326305
326414
+
4
9007294
9007403
+
52
4E-21
86.21
116
334123
334232
+
4
9007294
9007403
+
52
4E-21
86.21
116
608276
608386
+
4
9007294
9007404
+
53
1E-21
86.32
117
821483
821593
+
4
9007294
9007404
+
53
1E-21
86.32
117
4652269
4652379
-
4
9007294
9007404
+
53
1E-21
86.32
117
148966
149072
+
4
9007423
9007528
+
70
3.7E-32
91.51
106
32916
33025
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
86033
86142
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
149103
149211
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
304259
304367
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
317467
317575
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
326368
326476
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
334386
334494
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
608403
608511
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
608539
608647
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
821746
821854
+
4
9007563
9007671
+
93
1.5E-47
96.33
109
4652008
4652116
-
4
9007563
9007671
+
93
1.5E-47
96.33
109
13576
13951
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
86467
86842
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
149537
149910
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
283641
284015
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
304693
305067
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
317901
318275
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
327002
327376
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
334820
335266
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
608973
609347
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
822180
822554
+
4
9007999
9008373
+
206
3.1E-112
88.48
382
294
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
4651308
4651682
-
4
9007999
9008373
+
206
3.1E-112
88.48
382
13617
13871
+
4
9008039
9008293
+
154
1.3E-81
89.92
258
33391
33645
+
4
9008039
9008293
+
154
1.3E-81
89.92
258
86507
86693
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
149577
149831
+
4
9008039
9008293
+
154
1.3E-81
89.92
258
304733
304918
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
317941
318126
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
327042
327227
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
334860
335045
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
609013
609133
+
4
9008039
9008159
+
62
4.8E-27
87.7
122
822220
822405
+
4
9008039
9008224
+
97
9.1E-48
87.83
189
4651457
4651642
-
4
9008039
9008224
+
97
9.1E-48
87.83
189
10197
10315
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
29971
30089
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
83315
83433
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
146383
146501
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
280488
280606
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
301538
301656
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
314749
314867
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
323848
323966
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
331666
331784
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
819027
819145
+
4
9043093
9043211
+
91
8.2E-45
94.12
119
4654717
4654835
-
4
9043093
9043211
+
91
8.2E-45
94.12
119
10630
10728
+
4
9043526
9043624
+
68
4.9E-31
92
100
30404
30502
+
4
9043526
9043624
+
68
4.9E-31
92
100
83748
83846
+
4
9043526
9043624
+
68
4.9E-31
92
100
146816
146914
+
4
9043526
9043624
+
68
4.9E-31
92
100
280922
281019
+
4
9043526
9043624
+
68
4.9E-31
92
100
12879
12990
+
4
9047894
9048004
+
53
1E-21
86.32
117
32653
32764
+
4
9047894
9048004
+
53
1E-21
86.32
117
85770
85881
+
4
9047894
9048004
+
52
4E-21
86.21
116
148839
148949
+
4
9047894
9048004
+
53
1E-21
86.32
117
148853
148950
+
4
9047894
9048004
+
53
1E-21
86.32
117
282944
283053
+
4
9047894
9048003
+
52
4E-21
86.21
116
303996
304105
+
4
9047894
9048003
+
52
4E-21
86.21
116
317204
317313
+
4
9047894
9048003
+
52
4E-21
86.21
116
326305
326414
+
4
9047894
9048003
+
52
4E-21
86.21
116
334123
334232
+
4
9047894
9048003
+
52
4E-21
86.21
116
608276
608386
+
4
9047894
9048004
+
53
1E-21
86.32
117
821483
821593
+
4
9047894
9048004
+
53
1E-21
86.32
117
4652269
4652379
-
4
9047894
9048004
+
53
1E-21
86.32
117
32916
33025
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
295
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
86033
86142
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
148966
149072
+
4
9048023
9048128
+
70
3.7E-32
91.51
106
149103
149211
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
149121
149229
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
304259
304367
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
317467
317575
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
326368
326476
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
334386
334494
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
608403
608511
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
608539
608647
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
821746
821854
+
4
9048163
9048271
+
93
1.5E-47
96.33
109
4652008
4652116
-
4
9048163
9048271
+
93
1.5E-47
96.33
109
13576
13951
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
86467
86842
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
149537
149910
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
283641
284015
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
304693
305067
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
317901
318275
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
327002
327376
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
334820
335266
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
608973
609347
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
822180
822554
+
4
9048599
9048973
+
210
1.2E-114
88.74
382
4651308
4651682
-
4
9048599
9048973
+
210
1.2E-114
88.74
382
13617
13871
+
4
9048639
9048893
+
158
5E-84
90.31
258
33391
33645
+
4
9048639
9048893
+
158
5E-84
90.31
258
86507
86693
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
149577
149831
+
4
9048639
9048893
+
158
5E-84
90.31
258
304733
304918
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
317941
318126
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
327042
327227
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
334860
335045
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
609013
609133
+
4
9048639
9048759
+
66
1.8E-29
88.52
122
822220
822405
+
4
9048639
9048824
+
101
3.5E-50
88.36
189
4651457
4651642
-
4
9048639
9048824
+
101
3.5E-50
88.36
189
10200
10315
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
29974
30089
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
83318
83433
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
146386
146501
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
280491
280606
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
301541
301656
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
314752
314867
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
323851
323966
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
331669
331784
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
819030
819145
-
4
23268276
23268391
+
81
1.2E-38
92.31
117
296
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
4654717
4654832
+
4
23268276
23268391
+
81
1.2E-38
92.31
117
32916
33025
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
86033
86142
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
149103
149211
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
149121
149229
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
304259
304367
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
317467
317575
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
326368
326476
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
334386
334494
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
608403
608511
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
608539
608647
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
821746
821854
-
4
23281924
23282032
+
93
1.3E-47
96.33
109
4652008
4652116
+
4
23281924
23282032
+
93
1.3E-47
96.33
109
148966
149072
-
4
23282067
23282172
+
66
1.1E-29
90.57
106
10192
10300
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
29966
30074
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
83310
83418
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
146379
146486
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
280484
280591
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
301534
301641
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
314745
314852
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
323844
323956
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
331662
331769
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
819023
819130
-
4
32486318
32486425
+
74
2.3E-34
91.82
110
4654732
4654839
+
4
32486318
32486425
+
74
2.3E-34
91.82
110
10197
10315
-
5
884190
884308
+
91
8.2E-45
94.12
119
29971
30089
-
5
884190
884308
+
91
8.2E-45
94.12
119
83315
83433
-
5
884190
884308
+
91
8.2E-45
94.12
119
146383
146501
-
5
884190
884308
+
91
8.2E-45
94.12
119
280488
280606
-
5
884190
884308
+
91
8.2E-45
94.12
119
301538
301656
-
5
884190
884308
+
91
8.2E-45
94.12
119
314749
314867
-
5
884190
884308
+
91
8.2E-45
94.12
119
323848
323966
-
5
884190
884308
+
91
8.2E-45
94.12
119
331666
331784
-
5
884190
884308
+
91
8.2E-45
94.12
119
819027
819145
-
5
884190
884308
+
91
8.2E-45
94.12
119
4654717
4654835
+
5
884190
884308
+
91
8.2E-45
94.12
119
10630
10728
-
5
12784826
12784924
+
68
4.9E-31
92
100
30404
30502
-
5
12784826
12784924
+
68
4.9E-31
92
100
83748
83846
-
5
12784826
12784924
+
68
4.9E-31
92
100
146816
146914
-
5
12784826
12784924
+
68
4.9E-31
92
100
280922
281019
-
5
12784826
12784924
+
68
4.9E-31
92
100
297
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
10197
10315
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
29971
30089
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
83315
83433
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
146383
146501
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
280488
280606
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
301538
301656
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
314749
314867
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
323848
323966
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
331666
331784
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
819027
819145
-
5
12785239
12785357
+
91
8.2E-45
94.12
119
4654717
4654835
+
5
12785239
12785357
+
91
8.2E-45
94.12
119
13617
13802
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
33391
33576
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
86507
86693
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
149576
149761
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
283681
283866
-
6
16740597
16740782
+
65
5.5E-28
83.6
189
304733
304918
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
317941
318126
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
327042
327227
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
334860
335045
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
609013
609198
-
6
16740597
16740782
+
65
5.5E-28
83.6
189
822220
822405
-
6
16740597
16740782
+
65
1.6E-28
83.6
189
4651457
4651642
+
6
16740597
16740782
+
65
1.6E-28
83.6
189
10630
10728
-
6
18949473
18949571
+
60
4.1E-26
90
100
30404
30502
-
6
18949473
18949571
+
60
4.1E-26
90
100
83748
83846
-
6
18949473
18949571
+
60
4.1E-26
90
100
146816
146914
-
6
18949473
18949571
+
60
4.1E-26
90
100
280922
281019
-
6
18949473
18949571
+
60
4.1E-26
90
100
10630
10728
-
7
14230992
14231090
+
68
4.9E-31
92
100
30404
30502
-
7
14230992
14231090
+
68
4.9E-31
92
100
83748
83846
-
7
14230992
14231090
+
68
4.9E-31
92
100
146816
146914
-
7
14230992
14231090
+
68
4.9E-31
92
100
280922
281019
-
7
14230992
14231090
+
68
4.9E-31
92
100
10197
10315
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
29971
30089
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
83315
83433
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
146383
146501
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
280488
280606
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
301538
301656
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
314749
314867
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
323848
323966
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
331666
331784
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
819027
819145
-
7
14231405
14231523
+
91
8.2E-45
94.12
119
298
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
4654717
4654835
+
7
14231405
14231523
+
91
8.2E-45
94.12
119
13576
13951
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
86467
86842
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
149537
149910
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
283641
284015
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
304693
305067
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
317901
318275
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
327002
327376
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
334820
335266
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
608973
609347
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
822180
822554
-
8
9239342
9239716
+
210
1.2E-114
88.74
382
4651308
4651682
+
8
9239342
9239716
+
210
1.2E-114
88.74
382
13617
13871
-
8
9239422
9239676
+
158
5E-84
90.31
258
33391
33645
-
8
9239422
9239676
+
158
5E-84
90.31
258
149577
149831
-
8
9239422
9239676
+
158
5E-84
90.31
258
13617
13802
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
33391
33576
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
86507
86693
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
149576
149761
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
304733
304918
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
317941
318126
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
327042
327227
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
334860
335045
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
822220
822405
-
8
9239491
9239676
+
101
3.5E-50
88.36
189
4651457
4651642
+
8
9239491
9239676
+
101
3.5E-50
88.36
189
609013
609133
-
8
9239556
9239676
+
66
1.8E-29
88.52
122
32916
33025
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
86033
86142
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
149103
149211
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
149121
149229
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
304259
304367
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
317467
317575
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
326368
326476
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
334386
334494
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
608403
608511
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
608539
608647
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
821746
821854
-
8
9240044
9240152
+
93
1.4E-47
96.33
109
4652008
4652116
+
8
9240044
9240152
+
93
1.4E-47
96.33
109
148966
149072
-
8
9240187
9240292
+
70
3.7E-32
91.51
106
12879
12990
-
8
9240311
9240421
+
53
1E-21
86.32
117
299
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
117
32653
32764
-
8
9240311
9240421
+
53
1E-21
86.32
85770
85881
-
8
9240311
9240421
+
52
4E-21
86.21
116
148839
148949
-
8
9240311
9240421
+
53
1E-21
86.32
117
148853
148950
-
8
9240311
9240421
+
53
1E-21
86.32
117
282944
283053
-
8
9240312
9240421
+
52
4E-21
86.21
116
303996
304105
-
8
9240312
9240421
+
52
4E-21
86.21
116
317204
317313
-
8
9240312
9240421
+
52
4E-21
86.21
116
326305
326414
-
8
9240312
9240421
+
52
4E-21
86.21
116
334123
334232
-
8
9240312
9240421
+
52
4E-21
86.21
116
608276
608386
-
8
9240311
9240421
+
53
1E-21
86.32
117
821483
821593
-
8
9240311
9240421
+
53
1E-21
86.32
117
4652269
4652379
+
8
9240311
9240421
+
53
1E-21
86.32
117
10630
10728
-
8
9244405
9244503
+
68
4.9E-31
92
100
30404
30502
-
8
9244405
9244503
+
68
4.9E-31
92
100
83748
83846
-
8
9244405
9244503
+
68
4.9E-31
92
100
146816
146914
-
8
9244405
9244503
+
68
4.9E-31
92
100
280922
281019
-
8
9244405
9244503
+
68
4.9E-31
92
100
10197
10315
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
29971
30089
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
83315
83433
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
146383
146501
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
280488
280606
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
301538
301656
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
314749
314867
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
323848
323966
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
331666
331784
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
819027
819145
-
8
9244818
9244936
+
91
8.2E-45
94.12
119
4654717
4654835
+
8
9244818
9244936
+
91
8.2E-45
94.12
119
32916
33025
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
86033
86142
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
149103
149211
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
149121
149229
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
304259
304367
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
317467
317575
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
326368
326476
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
334386
334494
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
608403
608511
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
608539
608647
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
821746
821854
-
10
10281248
10281356
+
93
1.4E-47
96.33
109
4652008
4652116
+
10
10281248
10281356
+
93
1.4E-47
96.33
109
148966
149072
-
10
10281391
10281496
+
70
3.7E-32
91.51
106
12879
12990
-
10
10281515
10281625
+
53
1E-21
86.32
117
300
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
117
32653
32764
-
10
10281515
10281625
+
53
1E-21
86.32
85770
85881
-
10
10281515
10281625
+
52
4E-21
86.21
116
148839
148949
-
10
10281515
10281625
+
53
1E-21
86.32
117
148853
148950
-
10
10281515
10281625
+
53
1E-21
86.32
117
282944
283053
-
10
10281516
10281625
+
52
4E-21
86.21
116
303996
304105
-
10
10281516
10281625
+
52
4E-21
86.21
116
317204
317313
-
10
10281516
10281625
+
52
4E-21
86.21
116
326305
326414
-
10
10281516
10281625
+
52
4E-21
86.21
116
334123
334232
-
10
10281516
10281625
+
52
4E-21
86.21
116
608276
608386
-
10
10281515
10281625
+
53
1E-21
86.32
117
821483
821593
-
10
10281515
10281625
+
53
1E-21
86.32
117
4652269
4652379
+
10
10281515
10281625
+
53
1E-21
86.32
117
10630
10728
-
10
10285899
10285997
+
68
4.9E-31
92
100
30404
30502
-
10
10285899
10285997
+
68
4.9E-31
92
100
83748
83846
-
10
10285899
10285997
+
68
4.9E-31
92
100
146816
146914
-
10
10285899
10285997
+
68
4.9E-31
92
100
280922
281019
-
10
10285899
10285997
+
68
4.9E-31
92
100
10196
10315
+
10
10389963
10390082
+
92
2E-45
94.17
120
29970
30089
+
10
10389963
10390082
+
92
2E-45
94.17
120
83314
83433
+
10
10389963
10390082
+
92
2E-45
94.17
120
146382
146501
+
10
10389963
10390082
+
92
2E-45
94.17
120
280487
280606
+
10
10389963
10390082
+
92
2E-45
94.17
120
301537
301656
+
10
10389963
10390082
+
92
2E-45
94.17
120
314748
314867
+
10
10389963
10390082
+
92
2E-45
94.17
120
323847
323966
+
10
10389963
10390082
+
92
2E-45
94.17
120
331665
331784
+
10
10389963
10390082
+
92
2E-45
94.17
120
819026
819145
+
10
10389963
10390082
+
92
2E-45
94.17
120
4654717
4654836
-
10
10389963
10390082
+
92
2E-45
94.17
120
12879
12990
+
10
10394751
10394861
+
53
1E-21
86.32
117
32653
32764
+
10
10394751
10394861
+
53
1E-21
86.32
117
85770
85881
+
10
10394751
10394861
+
52
4E-21
86.21
116
148839
148949
+
10
10394751
10394861
+
53
1E-21
86.32
117
148853
148950
+
10
10394751
10394861
+
53
1E-21
86.32
117
282944
283053
+
10
10394751
10394860
+
52
4E-21
86.21
116
303996
304105
+
10
10394751
10394860
+
52
4E-21
86.21
116
317204
317313
+
10
10394751
10394860
+
52
4E-21
86.21
116
326305
326414
+
10
10394751
10394860
+
52
4E-21
86.21
116
334123
334232
+
10
10394751
10394860
+
52
4E-21
86.21
116
608276
608386
+
10
10394751
10394861
+
53
1E-21
86.32
117
821483
821593
+
10
10394751
10394861
+
53
1E-21
86.32
117
4652269
4652379
-
10
10394751
10394861
+
53
1E-21
86.32
117
32916
33025
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
86033
86142
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
301
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
148966
149072
+
10
10394880
10394985
+
70
3.7E-32
91.51
106
149103
149211
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
149121
149229
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
304259
304367
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
317467
317575
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
326368
326476
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
334386
334494
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
608403
608511
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
608539
608647
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
821746
821854
+
10
10395020
10395128
+
89
4.4E-45
95.41
109
4652008
4652116
-
10
10395020
10395128
+
89
4.4E-45
95.41
109
13576
13951
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
86467
86842
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
149537
149910
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
283641
284015
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
304693
305067
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
317901
318275
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
327002
327376
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
334820
335266
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
608973
609347
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
822180
822554
+
10
10395456
10395830
+
202
7.6E-110
88.22
382
4651308
4651682
-
10
10395456
10395830
+
202
7.6E-110
88.22
382
13617
13871
+
10
10395496
10395750
+
150
3.2E-79
89.53
258
13617
13802
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
33391
33645
+
10
10395496
10395750
+
150
3.2E-79
89.53
258
33391
33576
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
86507
86693
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
149576
149761
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
149577
149831
+
10
10395496
10395750
+
150
3.2E-79
89.53
258
304733
304918
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
317941
318126
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
327042
327227
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
334860
335045
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
609013
609133
+
10
10395496
10395616
+
62
4.8E-27
87.7
122
822220
822405
+
10
10395496
10395681
+
97
9.1E-48
87.83
189
4651457
4651642
-
10
10395496
10395681
+
97
9.1E-48
87.83
189
10197
10315
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
29971
30089
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
83315
83433
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
146383
146501
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
280488
280606
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
301538
301656
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
314749
314867
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
323848
323966
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
302
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
331666
331784
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
819027
819145
-
10
19946322
19946440
-
91
8.2E-45
94.12
119
4654717
4654835
+
10
19946322
19946440
-
91
8.2E-45
94.12
119
10630
10728
-
10
19946755
19946853
-
68
4.9E-31
92
100
30404
30502
-
10
19946755
19946853
-
68
4.9E-31
92
100
83748
83846
-
10
19946755
19946853
-
68
4.9E-31
92
100
146816
146914
-
10
19946755
19946853
-
68
4.9E-31
92
100
280922
281019
-
10
19946755
19946853
-
68
4.9E-31
92
100
12879
12990
-
10
19951121
19951231
-
53
1E-21
86.32
117
32653
32764
-
10
19951121
19951231
-
53
1E-21
86.32
117
85770
85881
-
10
19951121
19951231
-
52
4E-21
86.21
116
148839
148949
-
10
19951121
19951231
-
53
1E-21
86.32
117
148840
148949
-
10
19951121
19951230
-
52
4E-21
86.21
116
282944
283053
-
10
19951121
19951230
-
52
4E-21
86.21
116
303996
304105
-
10
19951121
19951230
-
52
4E-21
86.21
116
317204
317313
-
10
19951121
19951230
-
52
4E-21
86.21
116
326305
326414
-
10
19951121
19951230
-
52
4E-21
86.21
116
334123
334232
-
10
19951121
19951230
-
52
4E-21
86.21
116
608276
608386
-
10
19951121
19951231
-
53
1E-21
86.32
117
821483
821593
-
10
19951121
19951231
-
53
1E-21
86.32
117
4652269
4652379
+
10
19951121
19951231
-
53
1E-21
86.32
117
32916
33025
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
86033
86142
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
148966
149072
-
10
19951250
19951355
-
70
3.7E-32
91.51
106
149103
149211
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
149121
149229
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
304259
304367
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
317467
317575
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
326368
326476
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
334386
334494
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
608403
608511
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
608539
608647
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
821746
821854
-
10
19951390
19951498
-
93
1.2E-47
96.33
109
4652008
4652116
+
10
19951390
19951498
-
93
1.2E-47
96.33
109
13576
13951
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
86467
86842
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
149537
149910
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
283641
284015
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
304693
305067
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
317901
318275
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
327002
327376
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
334820
335266
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
608973
609347
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
303
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
822180
822554
-
10
19951829
19952203
-
210
1.2E-114
88.74
382
4651308
4651682
+
10
19951829
19952203
-
210
1.2E-114
88.74
382
13617
13871
-
10
19951869
19952123
-
158
5E-84
90.31
258
33391
33645
-
10
19951869
19952123
-
158
5E-84
90.31
258
86507
86693
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
149577
149831
-
10
19951869
19952123
-
158
5E-84
90.31
258
304733
304918
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
317941
318126
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
327042
327227
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
334860
335045
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
609013
609133
-
10
19951869
19951989
-
66
1.8E-29
88.52
122
822220
822405
-
10
19951869
19952054
-
101
3.5E-50
88.36
189
4651457
4651642
+
10
19951869
19952054
-
101
3.5E-50
88.36
189
13576
13951
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
86467
86842
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
149537
149910
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
283641
284015
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
304693
305067
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
317901
318275
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
327002
327376
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
334820
335266
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
608973
609347
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
822180
822554
+
12
5633037
5633411
-
203
1.9E-110
88.25
383
4651308
4651682
-
12
5633037
5633411
-
203
1.9E-110
88.25
383
13618
13871
+
12
5633117
5633370
-
153
5.1E-81
89.88
257
33392
33645
+
12
5633117
5633370
-
153
5.1E-81
89.88
257
149578
149831
+
12
5633117
5633370
-
153
5.1E-81
89.88
257
13618
13802
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
33392
33576
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
86509
86693
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
149577
149761
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
304734
304918
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
317942
318126
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
327043
327227
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
334861
335045
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
609014
609133
+
12
5633251
5633370
-
61
1.9E-26
87.6
121
822221
822405
+
12
5633186
5633370
-
96
3.7E-47
87.77
188
4651457
4651641
-
12
5633186
5633370
-
96
3.7E-47
87.77
188
12879
12986
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
32653
32760
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
85770
85877
+
12
5633988
5634094
-
48
1.1E-18
85.71
112
148839
148954
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
304
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
282944
283050
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
303996
304102
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
317204
317310
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
326305
326411
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
334123
334229
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
608276
608382
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
821483
821589
+
12
5633988
5634094
-
49
2.6E-19
85.84
113
4652273
4652379
-
12
5633988
5634094
-
49
2.6E-19
85.84
113
13598
13712
+
12
8526139
8526251
+
40
1E-39
83.62
116
33372
33486
+
12
8526139
8526251
+
40
1E-39
83.62
116
149559
149671
+
12
8526139
8526251
+
43
6.1E-41
84.35
115
283663
283776
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
304715
304828
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
317923
318036
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
327024
327137
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
334842
335027
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
608995
609108
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
822202
822315
+
12
8526139
8526251
+
40
3.6E-39
83.62
116
4651547
4651660
-
12
8526139
8526251
+
40
3.6E-39
83.62
116
13745
13871
+
12
8526284
8526410
+
59
1E-39
86.61
127
33518
33645
+
12
8526284
8526410
+
59
1E-39
86.61
127
149704
149830
+
12
8526284
8526410
+
59
6.1E-41
86.61
127
283809
283935
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
304861
304987
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
318069
318195
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
327170
327296
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
334988
335186
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
609141
609867
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
822348
822474
+
12
8526284
8526410
+
59
3.6E-39
86.61
127
4651388
4651514
-
12
8526284
8526410
+
59
3.6E-39
86.61
127
13745
13871
+
12
13351723
13351849
-
63
4.4E-27
87.4
127
33518
33645
+
12
13351723
13351849
-
63
4.4E-27
87.4
127
149704
149830
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
283809
283935
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
304861
304987
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
318069
318195
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
327170
327296
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
334988
335186
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
609141
609267
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
822348
822474
+
12
13351723
13351849
-
63
8.6E-27
87.4
127
4651388
4651514
-
12
13351723
13351849
-
63
8.6E-27
87.4
127
10192
10315
-
12
20601570
20601692
+
85
4.3E-41
92
125
29966
30089
-
12
20601570
20601692
+
85
4.3E-41
92
125
305
Bacillus
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
83310
83433
-
12
20601570
20601692
+
85
4.3E-41
92
125
146379
146501
-
12
20601570
20601692
+
85
4.3E-41
92
125
280484
280606
-
12
20601570
20601692
+
85
4.3E-41
92
125
301534
301656
-
12
20601570
20601692
+
85
4.3E-41
92
125
314745
314867
-
12
20601570
20601692
+
85
4.3E-41
92
125
323844
323966
-
12
20601570
20601692
+
85
4.3E-41
92
125
331662
331784
-
12
20601570
20601692
+
85
4.3E-41
92
125
819023
819145
-
12
20601570
20601692
+
85
4.3E-41
92
125
4654717
4654839
+
12
20601570
20601692
+
85
4.3E-41
92
125
13709
13932
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
33490
33645
-
12
24643391
24643553
+
89
1.2E-42
88.48
165
86600
86832
-
12
24643330
24643553
+
105
7.1E-52
86.46
223
149668
149891
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
283773
284015
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
304825
305048
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
318033
318256
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
327134
327357
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
334952
335247
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
609105
6093288
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
822312
822535
-
12
24643330
24643553
+
105
7.1E-52
86.46
229
4651327
4651550
+
12
24643330
24643553
+
105
7.1E-52
86.46
229
306
Table C-2. Xanthomonas oryzae alignments in the rice genome
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
3101765
3101906
-
1
21872692
21872833
+
73
1.40E-33
87.59
145
3817658
3817830
+
1
29540592
29540764
+
69
5.70E-31
84.75
177
309637
309746
-
1
33567086
33567195
+
62
1.10E-26
89.09
110
310122
536923
310366
537032
-
1
33566480
33566724
+
111
3.90E-56
86.06
251
-
1
33567086
33567195
+
62
1.10E-26
89.09
110
537408
537652
-
1
33566480
33566724
+
111
3.90E-56
86.06
251
306611
306716
-
2
808137
808242
+
78
4.10E-37
93.4
106
310157
310261
+
2
815286
815390
+
48
5.00E-41
86.11
108
533897
534002
-
2
808137
808242
+
78
4.10E-37
93.4
106
537443
537547
+
2
815286
815390
+
48
5.00E-41
86.11
108
306611
306716
+
2
14191648
14191753
+
86
3.10E-42
95.28
106
533897
534002
+
2
14191648
14191753
+
86
3.10E-42
95.28
106
3845432
3845575
-
2
23057548
23057691
+
71
2.30E-32
87.07
147
3862858
3863001
-
2
23057548
23057691
+
71
2.30E-32
87.07
147
306611
306716
-
3
23618360
23618465
-
75
3.10E-35
92.52
107
533897
534002
-
3
23618360
23618465
-
75
3.10E-35
92.52
107
310157
310365
-
3
31755438
31755646
-
97
1.40E-52
86.18
217
537443
537651
-
3
31755438
31755646
-
97
1.40E-52
86.18
217
310157
310365
-
3
31756570
31756778
-
97
1.40E-52
86.18
217
537443
537651
-
3
31756570
31756778
-
97
1.40E-52
86.18
217
306611
306716
+
4
8907662
8907767
+
90
5.40E-45
96.23
106
310157
310365
+
4
8913252
8913460
+
97
1.60E-52
86.18
217
533897
534002
+
4
8907662
8907767
+
90
5.40E-45
96.23
106
537443
537651
+
4
8913252
8913460
+
97
1.60E-52
86.18
217
306611
306716
+
4
8984065
8984170
+
90
5.40E-45
96.23
106
533897
534002
+
4
8984065
8984170
+
90
5.40E-45
96.23
106
306611
306716
+
4
9002493
9002598
+
90
5.40E-45
96.23
106
533897
534002
+
4
9002493
9002598
+
90
5.40E-45
96.23
106
310157
537443
310365
537651
+
4
9008085
9008293
+
97
1.60E-52
86.18
217
+
4
9008085
9008293
+
97
1.60E-52
86.18
217
306611
306716
+
4
9043093
9043198
+
90
5.40E-45
96.23
106
533897
534002
+
4
9043093
9043198
+
90
5.40E-45
96.23
106
310157
310365
+
4
9048685
9048893
+
97
1.60E-52
86.18
217
307
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
537443
537651
+
4
9048685
9048893
+
97
1.60E-52
86.18
217
306614
306716
-
4
23268289
23268391
+
79
9.70E-38
94.17
103
533900
534002
-
4
23268289
23268391
+
79
9.70E-38
94.17
103
306611
306714
-
4
32486318
32486421
+
77
1.70E-36
93.33
105
533897
534000
-
4
32486318
32486421
+
77
1.70E-36
93.33
105
306611
306716
-
5
884203
884308
+
90
5.40E-45
96.23
106
533897
534002
-
5
884203
884308
+
90
5.40E-45
96.23
106
306611
306716
-
5
12785252
12785357
+
90
5.40E-45
96.23
106
533897
534002
-
5
12785252
12785357
+
90
5.40E-45
96.23
106
2130495
2130652
-
5
17472623
17472780
+
54
6.40E-22
83.33
162
2130555
2130652
-
5
20846967
20847064
+
49
4.50E-23
87.13
101
310122
310365
-
6
16740598
16740771
+
81
1.10E-37
86.44
177
537408
537581
-
6
16740598
16740771
+
81
1.10E-37
86.44
177
3817655
3817780
-
6
24360517
24360642
+
48
1.30E-26
84.38
128
306611
306716
-
7
14231418
14231523
+
90
5.40E-45
96.23
106
533897
534002
-
7
14231418
14231523
+
90
5.40E-45
96.23
106
310157
310365
-
8
9239422
9239630
+
97
1.50E-52
86.18
217
537443
537651
-
8
9239422
9239630
+
97
1.50E-52
86.18
217
306611
306716
-
8
9244831
9244936
+
90
5.40E-45
96.23
106
533897
534002
-
8
9244831
9244936
+
90
5.40E-45
96.23
106
2130515
2130652
-
8
5640788
5640925
+
55
1.60E-22
84.62
143
306611
306716
+
10
10389964
10390069
+
90
5.40E-45
96.23
106
533897
534002
+
10
10389964
10390069
+
90
5.40E-45
96.23
106
310157
310365
+
10
10395542
10395750
+
92
1.30E-49
85.65
216
537443
537651
+
10
10395542
10395750
+
92
1.30E-49
85.65
216
306611
306716
-
10
19946322
19946427
-
90
5.40E-45
96.23
106
533897
534002
-
10
19946322
19946427
-
90
5.40E-45
96.23
106
310157
310365
-
10
19951915
19952123
-
97
1.20E-52
86.18
217
537443
537651
-
10
19951915
19952123
-
97
1.20E-52
86.18
217
310157
310365
+
12
5633117
5633325
-
93
3.60E-50
85.71
217
537443
537651
+
12
5633117
5633325
-
93
3.60E-50
85.71
217
310136
310366
+
12
8526182
8526411
+
93
2.00E-45
84.81
237
308
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
537422
537652
+
12
8526182
8526411
+
93
2.00E-45
84.81
237
310133
310366
+
12
13351722
13351966
-
99
2.00E-48
84.86
251
537408
537652
+
12
13351722
13351966
-
99
2.00E-48
84.86
251
306611
306716
-
12
20601583
20601688
+
83
2.90E-40
94.39
107
533897
534002
-
12
20601583
20601688
+
83
2.90E-40
94.39
107
309
Table C-3. Pseudomonas syringae alignments in the rice genome
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
1240999
1241175
-
1
29540592
29540767
+
61
3.80E-26
83
181
3847997
3848275
+
1
33566475
33566753
+
122
1.00E-62
86
286
5413584
5423862
+
1
33566475
33566753
+
118
2.50E-60
85
286
5948505
5948783
+
1
33566475
33566753
+
122
1.00E-62
86
286
3848073
3848246
+
1
33566551
33566724
+
82
8.40E-39
87
178
5423659
5423832
+
1
33566551
33566724
+
78
2.10E-36
86
178
5423659
5423760
+
1
33566551
33566652
+
52
3.30E-21
88
104
5948581
5948754
+
1
33566551
33566724
+
82
8.40E-39
87
178
3848622
3848731
+
1
33567086
33567195
+
63
2.80E-27
89
111
5424208
5424317
+
1
33567086
33567195
+
63
2.80E-27
89
111
5949130
5949239
+
1
33567086
33567195
+
63
2.80E-27
89
111
3847930
3848211
-
1
33567570
33567851
+
100
4.90E-49
84
292
3848107
3848211
-
1
33567570
33567674
+
53
2.30E-21
87
109
5423517
5423798
-
1
33567570
33567851
+
104
2.00E-51
84
292
5423659
5423797
-
1
33567570
33567708
+
56
3.60E-23
85
144
5948438
5948719
-
1
33567570
33567851
+
100
4.90E-49
84
292
3851688
3851806
+
2
808124
808242
+
71
1.40E-32
90
119
5427274
5427392
+
2
808124
808242
+
71
1.40E-32
90
119
5952196
5952314
+
2
808124
808242
+
71
1.40E-32
90
119
3848107
3848211
-
2
815286
815390
+
48
6.20E-40
86
108
3848107
3848211
-
2
815286
815390
+
48
2.30E-18
86
108
5423688
5423797
-
2
815286
815395
+
49
5.70E-19
86
113
5423689
5423798
-
2
815286
815395
+
49
1.60E-40
86
113
5948615
5948719
-
2
815286
815390
+
48
6.20E-40
86
108
3847930
3848080
-
2
815417
815567
+
52
6.20E-40
83
156
5423517
5423667
-
2
815417
815567
+
52
1.60E-40
83
156
5948438
5948588
-
2
815417
815567
+
52
6.20E-40
83
156
3851688
3851806
-
2
14191648
14191766
+
79
1.80E-37
92
119
5427274
5427392
-
2
14191648
14191766
+
79
1.80E-37
92
119
5952196
5952314
-
2
14191648
14191766
+
79
1.80E-37
92
119
4010715
4010842
+
3
1769236
1769363
-
63
1.20E-27
87
131
3847930
3848211
+
3
31755438
31755719
-
100
4.90E-49
84
292
5423517
5423798
+
3
31755438
31755719
-
104
2.00E-51
84
292
5948438
5948719
+
3
31755438
31755719
-
100
4.90E-49
84
292
5423659
5423760
+
3
31755475
31755576
-
35
6.50E-11
83
107
310
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
3847930
3848211
+
3
31756570
31756851
-
100
4.90E-49
84
292
5423517
5423798
+
3
31756570
31756851
-
104
2.00E-51
84
292
5948438
5948719
+
3
31756570
31756851
-
100
4.90E-49
84
292
5423659
5423760
+
3
31756607
31756708
-
35
6.50E-11
83
107
3851688
3851806
-
4
8907662
8907780
+
83
6.40E-40
92
119
5427274
5427392
-
4
8907662
8907780
+
83
6.40E-40
92
119
5952196
5952314
-
4
8907662
8907780
+
83
6.40E-40
92
119
3847930
3848211
-
4
8913252
8913533
+
100
4.90E-49
84
292
3848107
3848211
4
8913252
8913356
+
53
2.30E-21
87
109
5423517
5423798
-
4
8913252
8913533
+
104
2.00E-51
84
292
5948438
5948719
-
4
8913252
8913533
+
100
4.90E-49
84
292
5423659
5423760
-
4
8913289
8913390
+
35
6.50E-11
83
107
3851688
3851806
-
4
8984065
8984183
+
83
6.40E-40
92
119
5427274
5427392
-
4
8984065
8984183
+
83
6.40E-40
92
119
5952196
5952314
-
4
8984065
8984183
+
83
6.40E-40
92
119
3851688
3851806
-
4
9002493
9002611
+
83
6.40E-40
92
119
5427274
5427392
-
4
9002493
9002611
+
83
6.40E-40
92
119
5952196
5952314
-
4
9002493
9002611
+
83
6.40E-40
92
119
3847930
3848211
-
4
9008085
9008366
+
100
4.90E-49
84
292
5423517
5423798
-
4
9008085
9008366
+
104
2.00E-51
84
292
5423659
5423797
-
4
9008085
9008223
+
56
3.60E-23
85
144
5948438
5948719
-
4
9008085
9008366
+
100
4.90E-49
84
292
3851688
3851806
-
4
9043093
9043211
+
83
6.40E-40
92
119
5427274
5427392
-
4
9043093
9043211
+
83
6.40E-40
92
119
5952196
5952314
-
4
9043093
9043211
+
83
6.40E-40
92
119
3847930
3848211
-
4
9048685
9048966
+
100
4.90E-49
84
292
3848107
3848211
-
4
9048685
9048789
+
53
2.30E-21
87
109
5423517
5423798
-
4
9048685
9048966
+
104
2.00E-51
84
292
5423659
5423797
-
4
9048685
9048823
+
56
3.60E-23
85
144
5948438
5948719
-
4
9048685
9048966
+
100
4.90E-49
84
292
5952196
5952314
+
4
23268276
23268391
+
73
8.50E-34
91
117
3851688
3851806
+
5
884190
884308
+
83
6.40E-40
92
119
5427274
5427392
+
5
884190
5952196
5952314
+
5
3851688
3851806
+
5
+
83
6.40E-40
92
119
884190
884308
884308
+
83
6.40E-40
92
119
12785239
12785357
+
83
6.40E-40
92
119
311
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
5427274
5427392
+
5
12785239
12785357
+
83
6.40E-40
92
119
5952196
5952314
+
5
12785239
12785357
+
83
6.40E-40
92
119
3848073
3848246
+
6
16740598
16740771
+
85
1.30E-40
87
177
5423659
5423832
+
6
16740598
16740771
+
81
3.40E-38
86
177
5423660
5423833
+
6
16740598
16740771
+
81
1.10E-37
86
177
5948581
5948754
+
6
16740598
16740771
+
85
1.30E-40
87
177
1240999
1241179
+
6
24360464
24360643
+
69
5.90E-31
84
185
3851688
3851806
+
7
14231405
14231523
+
83
6.40E-40
92
119
5427274
5427392
+
7
14231405
14231523
+
83
6.40E-40
92
119
5952196
5952314
+
7
14231405
14231523
+
83
6.40E-40
92
119
3848211
+
8
9239349
9239630
+
100
4.90E-49
84
292
5423798
+
8
9239349
9239630
+
104
2.00E-51
84
292
5948438
5948719
+
8
9239349
9239630
+
100
4.90E-49
84
3851688
3851806
+
8
9244818
9244936
+
83
6.40E-40
92
119
5427274
5427392
+
8
9244818
9244936
+
83
6.40E-40
92
119
5952196
5952314
+
8
9244818
9244936
+
83
6.40E-40
92
119
3847930
3848211
-
10
10395542
10395823
+
95
4.80E-46
83
291
3851688
3851806
-
10
10389964
10390082
+
83
6.40E-40
92
119
5423517
5423798
-
10
10395542
10395823
+
99
2.00E-48
84
291
5427274
5427392
-
10
10389964
10390082
+
83
6.40E-40
92
119
5948438
5948719
-
10
10395542
10395823
+
95
4.80E-46
83
291
5952196
5952314
-
10
10389964
10390082
+
83
6.40E-40
92
119
3847930
3848211
+
10
19951915
19952196
-
100
4.90E-49
84
292
3851688
3851806
+
10
19946322
19946440
-
83
6.40E-40
92
119
5423517
5423798
+
10
19951915
19952196
-
104
2.00E-51
84
292
5427274
5427392
+
10
19946322
19946440
-
83
6.40E-40
92
119
5948438
5948719
+
10
19951915
19952196
-
100
4.90E-49
84
292
5952196
5952314
+
10
19946322
19946440
-
83
6.40E-40
92
119
3848073
3848174
+
11
13074159
13074260
+
52
9.00E-21
88
104
5423659
5423760
+
11
13074159
13074260
+
48
9.00E-19
87
104
5423660
5423761
+
11
13074159
13074260
+
48
5.90E-18
87
104
5948581
5948682
+
11
13074159
13074260
+
52
3.30E-21
88
104
3847930
3848211
-
12
5633044
5633325
-
96
1.20E-46
83
292
5423517
5423798
-
12
5633044
5633325
-
100
4.90E-49
84
292
5948438
5948719
-
12
5633044
5633325
-
96
1.20E-46
83
292
3847997
3848275
-
12
8526139
8526416
+
107
9.00E-54
84
287
5423584
5423862
-
12
8526139
8526416
+
103
2.20E-51
84
287
5948505
5948783
-
12
8526139
8526416
+
107
9.00E-54
84
287
3847930
5423517
292
312
Xanthomonas
Query
Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
5948581
5948740
-
12
8526182
8526340
+
68
2.20E-30
85
164
3847997
3848246
-
12
13351717
13351966
-
108
8.10E-54
86
256
5423584
5423833
-
12
13351717
13351966
-
104
2.00E-51
85
256
5948505
5948754
-
12
13351717
13351966
-
108
8.10E-54
86
256
3847950
3848070
+
12
24643338
24643458
+
40
5.90E-20
83
124
5423537
5423657
+
12
24643338
24643458
+
40
1.50E-20
83
124
5948458
5948578
+
12
24643338
24643458
+
40
5.90E-20
83
124
313
Table D-1. Magnaporthe grisea alignments in the rice genome
Magnapothe
Query
Contig Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
1238
40793
40894
+
1
24262
24362
+
54
2.00E-22
88
102
103
5481
5615
-
1
10096525
10096658
+
86
3.90E-62
91
134
103
4715
4849
-
1
10097755
10097888
+
32
7.60E-09
81
136
103
4465
4599
-
1
10098717
10098850
+
59
5.00E-25
86
135
232
32593
32784
+
1
12628560
12628750
+
77
8.20E-35
85
193
1472
28409
29251
+
1
12628569
12628780
+
94
1.70E-45
86
218
232
32394
32586
+
1
12628589
12628780
+
65
1.20E-27
83
193
232
32167
32358
+
1
12628590
12628780
+
60
1.10E-24
83
192
1129
6724
6907
-
1
12628591
12628772
+
80
1.50E-37
86
184
1472
28429
29251
-
1
26094018
26094209
+
79
1.60E-36
85
195
232
32593
32784
-
1
26094048
26094238
+
65
6.40E-41
83
193
1129
6724
6907
+
1
26094108
26094207
+
41
3.90E-14
85
101
232
32149
32265
-
1
26094111
26094226
+
48
3.90E-19
85
116
232
32593
32747
-
1
26098507
26098660
+
51
2.60E-19
83
155
232
32154
32272
-
1
26098526
26098643
+
38
6.40E-41
83
118
1472
28409
29165
-
1
26098526
26098651
+
48
5.30E-18
84
128
887
20571
20739
-
1
28658039
28658206
+
65
1.30E-28
85
169
190
17742
17840
-
1
31730847
31730945
+
41
3.30E-14
85
101
103
4506
4599
+
1
34495993
34496085
+
61
3.20E-26
91
93
103
5481
5615
+
1
34498016
34498149
+
78
5.20E-52
90
134
1169
37522
37679
+
1
36167620
36167776
+
69
4.70E-31
86
161
1287
62858
62984
+
1
36366779
36366904
+
45
8.80E-17
84
129
789
9724
9836
-
1
36368256
36368367
+
29
6.50E-07
81
113
2242
2527
2649
-
1
36368314
36368435
+
44
6.10E-16
84
124
1287
63220
63344
+
1
36368323
36368446
+
64
1.90E-27
88
124
1287
64122
64268
+
1
36369164
36369309
+
62
1.60E-36
85
150
767
14380
14564
-
1
37838097
37838281
+
82
1.00E-44
86
186
767
14403
14630
+
1
42812394
42812620
+
47
3.80E-17
80
231
929
12303
12407
+
2
83463
83566
+
30
7.20E-08
82
106
1506
27065
27252
+
2
1116252
1116438
+
50
1.60E-19
82
190
828
29843
30045
-
2
2560454
2560655
+
75
1.80E-34
84
207
232
31897
32046
+
2
3340643
3340791
+
47
9.40E-138
83
151
232
32130
32787
+
2
3340648
3341304
+
241
1.20E-132
84
665
1472
28393
29192
+
2
3340648
3340816
+
76
1.20E-49
86
172
183
1129
6724
6907
-
2
3340686
3340867
+
87
9.20E-42
87
232
32089
32787
+
2
3340835
3341532
+
219
9.40E-138
83
707
1472
28393
29251
+
2
3340876
3341103
+
114
1.80E-57
87
234
1129
6724
6907
-
2
3340914
3341076
+
75
1.50E-34
87
163
1472
28393
29188
+
2
3341104
3341268
+
98
9.40E-63
90
166
232
31906
32187
+
2
3341108
3341388
+
81
1.50E-130
82
285
1129
6724
6907
-
2
3341142
3341323
+
87
9.20E-42
87
183
314
Magnapothe
Query
Contig Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
232
32394
32787
+
2
3341368
3341760
+
142
4.20E-112
84
398
1472
28429
29191
+
2
3341368
3341499
+
94
2.30E-60
93
134
177
1129
6724
6907
-
2
3341370
3341544
+
73
2.40E-33
85
232
32203
32787
+
2
3341405
3341988
+
173
1.50E-130
82
593
1472
28394
29191
+
2
3341561
3341727
+
85
5.30E-55
88
169
232
31906
32187
+
2
3341564
3341844
+
75
1.30E-33
82
283
232
32200
32559
+
2
3341630
3341988
+
103
6.60E-89
82
363
232
31906
32130
+
2
3341792
3342015
+
54
4.30E-21
81
226
1472
28429
29191
+
2
3341824
3341955
+
70
5.50E-39
88
134
103
4465
4626
+
2
3620110
3620270
+
71
3.00E-32
86
163
103
5481
5615
+
2
3622270
3622403
+
74
1.50E-52
89
134
1169
37524
37679
-
2
27988474
27988628
+
67
7.40E-30
86
159
1491
14983
15083
+
2
28714599
28714698
+
88
2.80E-44
97
100
2169
4957
5201
+
2
28714599
28714842
+
185
1.50E-100
94
245
2169
5381
5510
+
2
28715028
28715156
+
93
2.30E-51
93
129
1280
19275
19418
+
2
28767311
28767453
+
49
4.20E-19
83
145
103
4468
4623
+
3
318636
318790
+
58
2.00E-24
84
158
103
4996
5106
+
3
319210
319319
+
50
6.50E-20
86
110
103
5481
5615
+
3
319654
319787
+
67
2.90E-50
87
135
1169
37522
37679
+
3
1059361
1059517
+
69
4.70E-31
86
161
714
20910
209135
+
3
4074435
4074559
-
66
1.80E-29
88
126
714
20190
20303
+
3
4075697
4075809
-
46
5.00E-17
85
114
714
20910
209135
+
3
4079982
4080106
-
66
1.80E-29
88
126
714
20190
20303
+
3
4081137
4081249
-
46
5.00E-17
85
114
714
20910
209135
+
3
4090650
4090774
-
70
6.70E-32
89
126
714
20190
20303
+
3
4091819
4091931
-
46
5.00E-17
85
114
714
20910
209135
-
3
4096846
4096970
+
58
1.20E-24
87
126
1472
28412
29146
-
3
7083432
7083535
-
54
1.90E-48
88
106
1472
28515
29251
-
3
7083626
7083731
-
60
1.90E-48
89
108
1472
28515
29251
-
3
8389102
8389207
+
47
5.40E-36
86
107
1287
62858
62984
-
3
9349412
9349537
-
41
2.30E-14
83
129
789
9725
9836
+
3
9350367
9350477
-
53
2.70E-21
87
113
1287
63188
63349
-
3
9350402
9350561
-
75
5.10E-34
87
163
126
2242
2525
2651
+
3
9350423
9350548
-
58
2.40E-24
87
1287
64094
64268
-
3
9351247
9351420
-
79
2.20E-45
86
179
2242
2525
2705
-
3
9358177
9358356
-
56
3.80E-23
83
180
789
9725
9836
-
3
9358248
9358358
-
41
4.20E-14
84
113
1287
63189
63344
-
3
9392316
9392470
+
61
8.00E-48
85
157
2242
2525
2663
+
3
9392325
9392462
+
54
6.10E-22
85
138
789
9725
9836
+
3
9392396
9392506
+
45
1.70E-16
85
113
1287
62858
62982
-
3
9394785
9394908
+
45
8.80E-17
84
125
1278
9586
9702
+
3
11502555
11502670
+
36
2.00E-11
83
116
103
4514
4626
-
3
25897273
25897384
-
57
8.00E-24
88
113
103
5481
5615
-
3
25900350
25900483
-
62
4.50E-43
87
134
767
14352
14565
-
3
29024871
29025083
+
102
1.80E-51
87
214
315
Magnapothe
Query
Contig Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
1238
18714
18814
-
3
29479121
29479220
+
76
5.20E-36
94
100
103
4465
4626
+
3
32311011
32311171
+
75
1.20E-34
87
163
103
5481
5615
+
3
32313158
32313291
+
78
5.70E-36
90
134
837
44948
45056
-
3
33946435
33946542
+
45
6.70E-17
85
109
1287
62858
62984
+
3
34385481
34385606
+
60
7.80E-26
87
128
1287
63358
63533
+
3
34388048
34388222
+
71
5.70E-34
85
179
1287
64122
64228
+
3
34388745
34388850
+
36
9.10E-11
83
108
190
17757
17855
-
3
34534979
34535077
-
48
2.10E-18
87
100
1254
63711
63869
+
4
474956
475113
+
58
2.90E-56
84
162
1254
63978
64097
+
4
475223
475341
+
42
2.90E-56
84
122
256
143
254
+
4
23876766
23876875
+
51
2.10E-20
86
111
1902
25590
25695
-
4
23876766
23876870
+
38
1.10E-12
84
106
1902
25596
25695
-
4
23876766
23876864
+
36
1.70E-11
84
100
1169
37524
37679
-
4
29270088
29270242
+
67
7.40E-30
86
159
232
32431
32586
-
4
31744688
31744842
+
83
2.20E-38
88
155
1129
6724
6907
+
4
31744697
31744877
+
79
4.50E-38
86
183
232
32659
32787
-
4
31744715
31744842
+
41
4.10E-122
83
129
232
31906
32613
-
4
31744889
31745595
+
199
4.10E-122
82
715
1472
28406
29251
-
4
31744916
31745130
+
70
3.70E-31
83
218
1129
6724
6907
+
4
31744925
31745105
+
87
6.90E-43
87
183
232
31972
32787
-
4
31744943
31745757
+
234
1.80E-128
82
822
1129
6724
6907
+
4
31745156
31745333
+
92
6.70E-46
88
180
1472
28429
29191
-
4
31745204
31745335
+
66
9.20E-29
87
134
232
32130
32604
-
4
31745354
31745827
+
146
1.20E-90
83
478
1472
28466
29251
-
4
31745372
31745526
+
84
9.20E-44
88
156
1129
6724
6872
+
4
31745380
31745526
+
76
2.90E-36
88
148
1129
6724
6907
+
4
31745608
31745789
+
73
2.40E-33
85
185
232
32622
32787
-
4
31745627
31745791
+
63
1.80E-26
84
167
1472
28393
29191
-
4
31745660
31745827
+
73
6.00E-33
86
169
767
14403
14565
+
5
333703
333864
+
72
4.60E-32
86
164
232
32383
32586
-
5
3513431
3513633
+
61
2.90E-25
82
205
232
32167
32358
-
5
3513431
3513621
+
69
4.80E-30
84
193
1472
28409
29251
-
5
3513431
3513642
+
111
6.70E-64
88
215
1129
6724
6907
+
5
3513439
3513620
+
84
5.90E-40
86
184
232
32593
32784
-
5
3513461
3513651
+
81
3.40E-37
85
193
1285
22135
22267
+
5
5775966
5776097
+
65
8.20E-29
87
133
1441
6072
6180
-
5
6629639
6629746
+
46
1.70E-17
85
110
1129
6724
6878
-
5
8624329
8624467
+
60
1.20E-26
86
140
123
1472
28409
29160
+
5
8624506
8624626
+
55
3.50E-22
86
232
32176
32540
+
5
8624764
8625130
+
76
3.20E-34
80
372
1472
28439
29167
+
5
8624764
8624863
+
49
2.20E-22
87
101
1129
6724
6872
-
5
8624791
8624918
+
57
7.00E-25
86
129
232
31921
32046
+
5
8624968
8625092
+
42
6.10E-14
83
126
1472
28415
29191
+
5
8624971
8625116
+
60
3.60E-25
85
148
316
Magnapothe
Query
Contig Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
1129
6724
6905
-
5
8624989
8625130
+
59
4.50E-26
85
143
103
4507
4626
+
5
20121761
20121879
+
56
3.20E-23
87
120
103
4698
4849
+
5
20122052
20122202
+
65
1.10E-28
86
153
103
4717
4858
+
5
20122072
20122212
+
59
7.00E-25
85
143
103
5481
5615
+
5
20123753
20123886
+
70
7.00E-48
88
134
508
41401
41526
+
5
20952159
20952283
+
39
6.30E-13
83
127
1287
64122
64315
-
5
22516956
22517148
+
70
1.20E-34
84
198
1287
62858
62984
-
5
22519029
22519154
+
43
1.40E-15
83
127
1169
37524
37679
-
5
22653687
22653841
+
67
7.40E-30
86
159
1169
37522
37679
+
5
22820168
22820324
+
69
4.70E-31
86
161
837
44948
45056
+
5
23976507
23976614
+
60
5.40E-26
89
108
232
32200
32586
-
5
24780203
24780588
+
124
3.70E-87
83
392
1129
6724
6864
+
5
24780215
24780349
+
69
2.00E-34
88
137
232
32668
32787
-
5
24780230
24780348
+
48
1.70E-80
85
120
232
32394
32643
-
5
24780374
24780622
+
79
1.70E-80
83
255
1129
6724
6864
+
5
24780453
24780577
+
51
1.10E-23
85
127
232
32394
32787
-
5
24780458
24780850
+
118
1.70E-60
82
398
1472
28415
29167
-
5
24780515
24780636
+
65
5.80E-39
88
125
232
31921
32130
-
5
24780659
24780867
+
56
3.70E-87
82
212
1472
28406
29251
-
5
24780659
24780873
+
90
4.10E-43
85
218
1129
6724
6907
+
5
24780667
24780848
+
83
2.40E-39
86
183
232
32308
32592
-
5
24780881
24781164
+
92
2.00E-63
83
288
1472
28429
29251
-
5
24780887
24781078
+
69
1.50E-30
84
197
232
32394
32751
-
5
24780950
24781306
+
110
1.70E-54
83
358
1129
6724
6907
+
5
24781123
24781304
+
71
3.80E-32
85
183
232
32668
32787
-
5
24781142
24781260
+
38
1.50E-11
83
122
1472
28409
29188
-
5
24781178
24781326
+
71
1.60E-42
87
151
190
17742
17855
+
5
28010943
28011056
+
53
2.00E-21
86
117
1189
16856
16959
-
6
1470529
1470631
+
43
9.80E-16
85
103
289
26103
26357
-
6
4668751
4669004
+
54
9.90E-22
80
258
1558
12945
13046
+
6
5884317
5884417
+
58
7.30E-25
89
102
1558
12945
13046
+
6
5894534
5894634
+
43
9.50E-16
85
103
1558
12945
13046
+
6
5917857
5917957
+
35
6.50E-11
84
103
1189
16856
16959
+
6
8230404
8230506
+
39
2.60E-13
84
103
103
5412
5585
-
6
27876984
27877156
+
86
1.20E-52
87
174
103
4465
4626
-
6
27878673
27878833
+
79
4.60E-37
87
163
1129
6724
6907
-
6
27957912
27958089
+
76
3.80E-35
86
180
232
32431
32640
+
6
27957947
27958155
+
49
8.50E-34
81
213
1472
28415
29182
+
6
27958124
27958260
+
47
2.10E-17
83
139
178
1129
6724
6907
-
6
27958140
27958317
+
82
9.40E-39
87
232
32659
32787
+
6
27958175
27958302
+
42
8.50E-34
83
130
232
32383
32586
-
6
28401587
28401789
+
69
2.40E-105
83
205
232
32167
32358
-
6
28401587
28401777
+
68
1.10E-55
84
192
1472
28409
29251
-
6
28401587
28401798
+
118
7.30E-60
89
214
1129
6724
6907
+
6
28401599
28401776
+
87
9.20E-42
87
179
317
Magnapothe
Query
Contig Start
End
Ori
Name
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
232
32394
32787
-
6
28401614
28402006
+
143
1.50E-141
84
395
232
32161
32361
-
6
28401812
28402011
+
98
2.40E-105
87
202
1472
28409
29251
-
6
28401815
28402026
+
119
1.80E-60
89
215
1129
6724
6907
+
6
28401823
28402004
+
85
1.50E-40
86
185
232
32383
32787
-
6
28401842
28402245
+
127
4.90E-132
83
407
232
32167
32361
-
6
28402040
28402233
+
84
6.00E-141
86
196
232
31917
32130
-
6
28402043
28402255
+
55
2.10E-102
81
215
1472
28409
29251
-
6
28402043
28402254
+
111
1.10E-55
88
215
1129
6724
6907
+
6
28402051
28402232
+
81
3.80E-38
86
185
232
32383
32787
-
6
28402070
28402473
+
127
4.90E-132
83
407
232
31975
32133
-
6
28402268
28402425
+
54
2.10E-137
84
158
232
32164
32358
-
6
28402271
28402464
+
79
5.50E-138
85
195
1472
28409
29251
-
6
28402271
28402482
+
108
7.00E-54
88
216
1129
6724
6907
+
6
28402279
28402460
+
103
2.10E-51
89
183
232
31975
32133
-
6
28402496
28402653
+
46
1.20E-132
82
158
232
32383
32586
-
6
28402499
28402701
+
88
1.50E-67
86
204
232
32167
32358
-
6
28402499
28402689
+
85
1.50E-141
86
193
1472
28409
29251
-
6
28402499
28402710
+
111
1.10E-55
88
215
1129
6724
6907
+
6
28402507
28402688
+
116
2.90E-59
91
184
232
32431
32787
-
6
28402526
28402881
+
122
1.20E-61
84
358
232
31936
32136
-
6
28402721
28402920
+
60
1.50E-141
83
200
232
32167
32364
-
6
28402721
28402917
+
87
2.90E-116
86
199
1472
28415
29251
-
6
28402727
28402932
+
103
6.90E-51
87
207
1129
6724
6878
+
6
28402735
28402887
+
82
1.20E-41
88
154
232
32358
32592
-
6
28402949
28403182
+
72
5.10E-35
83
236
1472
28394
29251
-
6
28402955
28403181
+
97
2.70E-47
86
229
1129
6724
6907
+
6
28402963
28403144
+
73
2.40E-33
85
185
232
32586
32787
-
6
28402982
28403182
+
74
5.00E-33
84
202
1121
33812
33964
+
7
10798
10949
+
83
1.30E-53
88
155
837
44952
45056
-
7
6808013
6808116
+
53
9.60E-22
88
105
837
44952
45056
-
7
6821385
6821488
+
45
6.70E-17
86
105
232
32593
32714
+
7
18133178
18133297
+
42
3.30E-30
84
122
1472
28409
29151
+
7
18133187
18133297
+
54
2.60E-51
87
114
1472
28514
29251
+
7
18133489
18133595
+
65
2.60E-51
90
109
1169
37524
37679
+
7
21825745
21825899
+
67
7.40E-30
86
159
232
32358
32586
+
8
5073183
5073410
+
84
7.80E-47
84
232
1472
28394
29251
+
8
5073184
5073410
+
83
6.30E-39
84
231
232
31906
32070
+
8
5073187
5073350
+
42
3.40E-21
81
166
1129
6724
6907
-
8
5073221
5073398
+
60
1.60E-25
83
180
1472
28497
29251
+
8
5088188
5088311
+
23
0.0046
80
127
508
41401
41526
+
8
5640822
5640946
+
43
2.50E-15
83
127
1954
14696
14871
-
8
22202223
22202397
+
63
5.90E-38
84
175
1254
63975
64136
-
8
24587485
24587645
+
52
6.50E-27
83
164
1254
63189
63314
-
8
24589134
24589258
+
46
2.20E-17
84
126
318
Magnapothe
Query
Contig Start
End
15083
Ori
Name
+
9
Rice
Chromosome
Start
End
Stats
Ori
Score
E-val
%ID
Length
97
100
1491
14983
3737
3836
+
88
2.80E-44
2169
4957
5201
+
2169
5381
5510
+
9
3737
3980
+
185
1.50E-100
94
245
9
4166
4294
+
93
1.80E-51
93
129
1491
14983
15083
+
2169
4957
5201
+
9
11665
11764
+
88
2.80E-44
97
100
9
11665
11908
+
185
1.50E-100
94
2169
5381
5510
245
+
9
12094
12222
+
93
1.80E-51
93
129
1491
14983
15083
+
9
19593
19692
+
88
2.80E-44
97
100
2169
4957
5201
+
9
19593
2169
5381
5510
+
9
20022
19836
+
185
1.50E-100
94
245
20150
+
93
1.80E-51
93
129
1491
14983
15083
+
9
27521
27620
+
88
2.80E-44
97
100
2169
4957
5201
+
9
27521
27764
+
185
1.50E-100
94
245
2169
5381
5510
+
9
27950
28078
+
93
1.80E-51
93
129
1491
14983
15083
+
9
35449
35548
+
88
2.80E-44
97
100
2169
4957
5201
+
9
35449
35692
+
185
1.50E-100
94
245
2169
5381
5510
+
9
35878
36006
+
93
67
1.80E-51
93
129
7.40E-30
86
159
57
41
2.20E-23
88
109
1.10E-26
84
113
1.20E-40
87
107
1169
37524
37679
+
9
15915210
15915364
+
1472
28514
29251
-
9
16972783
16972889
+
232
31915
32028
-
9
16973794
16973906
+
1472
28515
29251
-
9
18663147
18663252
+
232
32149
32256
-
9
18663867
18663973
+
51
47
1.80E-28
86
107
1472
28514
29251
-
9
18668398
18668504
+
56
1.30E-43
88
108
232
32580
32712
-
9
18669574
18669704
+
37
2.40E-24
82
133
232
32149
32256
-
9
18669574
18669680
+
35
2.10E-39
83
107
1169
37522
37679
-
9
21911806
21911962
+
86
161
28515
29251
-
9
22692292
22692397
+
69
60
4.70E-31
1472
1.30E-49
89
108
232
32584
32709
-
9
22692496
22692620
+
1.60E-31
85
125
1472
28412
29146
-
9
22692496
22692599
+
49
56
1.30E-49
88
104
232
32356
32478
-
9
22692499
22692620
+
34
1.10E-22
82
122
1121
33815
33964
+
10
65974
66122
+
53
1.70E-26
84
153
1169
37522
37679
+
10
20689841
20689997
-
69
4.60E-31
86
161
767
14385
14635
-
11
3075716
3075965
+
100
47
5.60E-58
85
252
9.70E-18
83
155
2.10E-20
85
127
2242
2525
2678
+
11
4463670
4463822
+
1287
62858
62982
+
11
28246412
28246535
+
1287
63130
63344
+
11
28248601
28248814
+
51
62
5.60E-54
82
214
789
9643
9795
-
11
28248665
28248816
+
48
2.70E-18
83
152
1287
63376
63492
+
11
28248853
28248968
+
62
5.60E-54
88
118
767
14463
14565
+
12
3232550
3232651
+
92
103
14352
14565
-
12
27458631
27458843
+
71
113
1.90E-44
767
1.70E-76
88
213
767
14088
14213
-
12
27458983
27459107
+
49
1.70E-76
85
125
319
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