Average speed of wild-type CC-1690 and mutant

Average speed of wild-type CC-1690 and mutant
Average speed of wild-type CC-1690 and mutant strain CC-3913 of Chlamydomonas
reinhardtii in response to varying light intensities
Sonam S. Bola, Steven S. Cheema, Brendan E. Lim, Zohaib T. Mahmood
Chlamydomonas reinhardtii responds to environmental stimuli such as light,
carbon dioxide and oxygen with the goal of finding an optimal environment to grow.
Their ability to move allows them to find a suitable environment. This study looks at the
speeds that C. reinhardtii swim at when exposed to three different light intensities (10
Lux, 270 Lux, 500 Lux). For each, the mutant strain CC-3913 and the wild-type strain
CC-1690, there were three replicates per light treatment. All of the replicates were
exposed to the three different light intensities with their movement recorded using the
DinoXcope. The videos were then projected onto CellTrack a program that calculated the
average speed of C. reinhardtii. A two-way analysis of variance test was used to interpret
the results. The test revealed three calculated p-values all of which indicated rejection of
the null hypotheses, thus providing support for all three alternate hypotheses. For an
improved future study, a way to control the heat emitted from the light sources should be
Chlamydomonas reinhardtii are single-celled green algae that inhabit terrestrial
and aquatic environments (Harris 2001). The organism’s prominent features include a
large circular shaped chloroplast, which facilitates photosynthesis and an eyespot that
senses light (Yoshimura 2011). In addition to these features there is a visually distinct
feature that differentiates the mutant strain CC-3913 and wild-type strain CC-1690 of C.
reinhardtii. This feature is the underdeveloped flagella on the mutant strain.
Under different light intensities, C. reinhardtii demonstrates positive phototaxis,
which is movement towards light and negative phototaxis, which is movement away from
light (Yoshimura 2011). When light hits C. reinhardtii’s eyespot, a light-sensitive
receptor protein called rhodopsin sends a signal to the flagellar membrane where calcium
channels open. The opening of the calcium channels leads to high concentrations of
calcium, which leads to the activity of kinase in the flagella, this generates movement.
This process is outlined in Figure 1, which is from King and Dutcher study on C.
reinhardtii in 1997.
Figure 1. The top of the diagram labeled A, shows how C. reinhardtii, moves in response to light.
The bottom of the figure, labeled B, shows how darkening conditions leads to decreases movement.
As such, the objective of our experiment was to examine if the speed by which C.
reinhardtii moved during positive and negative phototaxis, under different light
intensities was different for the mutant and wild-type. Accompanying our objective were
our three sets of hypotheses.
The null hypothesis for our first set is that light intensity has no effect on the
average speed of C. reinhardtii. In contrast, our first alternate hypothesis is that light
intensity has an effect on the average speed of C. reinhardtii. In the 1971 study
conducted by Feinleib and Curry, the relationship between light stimuli and oriented
phototactic responses was studied. Results of the study suggested that C. reinhardtii take
about one second for c. reinhardtii to switch from positive to negative phototaxis, thus
altering speed.
The null hypothesis of our second set of hypotheses is that the presence of
mutation has no effect on the average speed of C. reinhardtii. The alternate hypothesis of
our second set of hypotheses was that the presence of mutation has an effect on average
speed of C. reinhardtii. Our alternate hypothesis is supported by a 1984 study, which
looked at the different beat-like projections of flagella in the mutant and wild-type strains
(Segal et al. 1984). They discovered that their mutant strain of C. reinhardtii exhibited
only backward motions whereas the wild-type exhibited both forward and backward
The null hypothesis of our last set was that the effect of light intensity on average
speed of C. reinhardtii is the same in wild type and mutant. The alternate hypothesis to
this is that the effect of light intensity on average speed of C. reinhardtii is not the same
in wild type and mutant. The 1982 study looked at flagella structure and function, which
validates that the presence of well-developed flagella results in faster motion (Brokaw et
al. 1982).
The results of our study are important because it can ignite further investigation
on the behavior of C. reinhardtii and on its control process in regards to directional
To determine whether or not light intensity had an effect of cell speed, we used
three separate light intensities: a dark setting, a control or normal setting and a bright
setting. To set up the dark setting, we used a box covered in black plastic and placed it
over top of our compound microscope to ensure no outside light would enter. There were
holes cut at the top of the box to allow the exchange of the slides and to allow the
eyepieces to come out. We used a light meter to measure the intensity inside the box and
found the dark setting to be 10 Lux. For the control, we removed the box and just used
the natural light in the room. Again, we used the light meter and found our control setting
to be 270 Lux. For our third treatment, we used a lamp and placed it 60 cm away from
the microscope to set the Lux at 500.
We used three replicates under each of the light intensities for our experiment. We
took three samples from both the wild type and the mutant type solutions. From these
samples, we took 20 µL using the micropipettes for each of the three settings. Figure 1
shows an example of how the replicates were done.
Figure 2. Sample of how the replicates were used. The letters represent the conditions each replicate was
placed under. D represents the dark, L represents light added and N represent no added light.
The movement of the cells was measured by using a DinoXcope and a compound
microscope. We replaced one of the eyepieces with the DinoXcope and plugged it into
the laptop. We allowed each of our samples to acclimate to the change in light intensity
for two minutes before measuring the speed. Once acclimated, we picked a random part
on the slide by not looking through the eyepiece and scrolling around the slide for five
seconds. Once the five seconds were up, that particular spot was chosen as the testing site
and recorded a 30-second video. We analyzed the video using the program CellTrack
(Sacan et al., 2008) that allowed us to gather tracking data on the cells of our choice.
From each sample, we chose three C. reinhardtii cells that were moving and focused on
those as seen in Figure 2 below. We then used the program to gather tracking information
for each cell and then we analyzed this information using CellTrack (Sacan et al., 2008)
to find the average speed. We did this for all six of our replicates.
Figure 3. This is an image of us preparing one of our
mutant type cells for tracking.
The other factor that we had to account for was temperature to ensure that the
change in cell speed was not due to the temperature; however, we could not control the
change. We measured the temperature with a thermometer and recorded it in degrees
Celsius for each treatment. The temperature for the dark treatment was 250 C, 25.50C for
the control and 270C for the third treatment. The same microscope and DinoXcope were
used for all replicates to ensure minimal change. To determine if there was a significant
difference, we used a two-way Analysis of Variance (ANOVA) test.
Average Speed (micrrometers/sec)
Wild Type
Mutant Type
Light Intensity (Lux)
Figure 4. Average speed of mutant and wild type C. reinhardtii as a function of different treatments at
various light intensities. At n=3, the speeds at the 95% confidence interval were, in μm/s, displayed as the
error bars. The average speeds were displayed as the mean speed for that particular type of cell. The
calculated p-values were 2.41 x 10-11, 1.69 x-11, and 2.57 x-8.
As seen in Figure 3, there appears to be a positive trend as increasing light
intensity leads to an increase of the average speed of C. reinhardtii. There was no overlap
in confidence intervals between the mutant and wild-type cells.
We applied a two-way ANOVA test to differentiate between the effect of light
intensity and also wild and mutant types while using the means. We found that the
average speed of C. reinhardtii is significantly different over different light intensities as
the calculated p-value was 2.41 x 10-11.
The average speeds of wild type C. reinhardtii are significantly different than
mutant C. reinhardtii as the calculated p-value was 1.69 x -11.
We also discovered that the effect of light intensity on average speeds of C.
reinhardtii is significantly different for wild type and mutant as the calculated p-value
was 2.57 x 10-8.
For our first hypothesis the p-value was much less than 0.05. Therefore, we were
able to reject our first null hypothesis and provide support for its alternate hypothesis that
light intensity has an effect on the average speed of C. reinhardtii. We observed this
effect as C. reinhardtii had a faster mean speed as we increased the light intensity.
The scientific literature supports our observations regarding our first hypothesis.
This is most evident as C. reinhardtii have an eyespot and chloroplast that they use in
conjunction to sense light and facilitate photosynthesis. Since they require photosynthesis
as a means to acquire nutrients, C. reinhardtii display a behavior called phototaxis which
causes them to move toward light sources (Yoshimura 2011).
However, phototaxis can cause organisms to exhibit a negative response to
environmental factors as well. In his research, Yoshimura (2011) also found that C.
reinhardtii would move away from light sources if the intensity was too high. We also
observed this negative phototaxis response in the practice run of our experiment when C.
reinhardtii had very little to no movement in our bright light intensity treatment.
Consequently, we reduced the light intensity for our bright light intensity treatment from
1980 Lux to 500 Lux in our final experiment.
The p-value for our second hypothesis was also much less than 0.05. As a result,
we were able to reject our second null hypothesis and provide support for its alternate
hypothesis that mutation has an effect on average speed of C. reinhardtii. As observed in
Figure 3, the mutant-type C. reinhardtii demonstrated a much slower average speed at
each treatment compared to the wild-type of C. reinhardtii.
Since Brokaw et al. (1982) found that the presence of functioning flagella enable
faster motion, it makes sense that the presence of mutation caused lower speeds in C.
reinhardtii because each of our mutant types were missing developed flagella. When
Plummer et al. (1978) induced paralysis in C. reinhardtii, they observed a loss of
function in radial spokes and dynein in the axonemes C. reinhardtii. In turn, the loss of
function in these parts disrupted the sliding and bending process that facilitates doubletmicrotubule interaction in cells (Plummer et al. 1978). It is these doublet-microtubule
interactions that are largely responsible for flagella formation and activity (Plummer et al.
Additionally, the p-value for our third hypothesis was also less than 0.05. This
lead us to reject the third null hypothesis and provide support for its alternate hypothesis
that effect of light intensity on average speed of C. reinhardtii is not the same in wildtype and mutant. Even though both the wild type and mutant type of C. reinhardtii had
increased speed as light intensity increased, the wild type was still noticeably more active
and faster at each light intensity.
Furthermore, the results of our third hypothesis agree with research that was
previously completed. In a similar experiment, Kuchka and Jarvik (1987) observed some
C. reinhardtii that were moving noticeably slower than the others because they all had
shorter or no flagella at all. Upon further investigation they found that all the slower C.
reinhardtii had multiple gene mutations that were causing the change in flagella function
(Kuchka and Jarvik 1987).
Even though there was a strict attention to detail during the methods and data
collection, there are some sources of uncertainty and variation that must be taken into
consideration. For example, it is possible to create contamination when transferring our
organisms from the given flasks and tubes to the microscope slides via micropipette. This
includes exposure to any other chemicals or substances in our laboratory environment
that may have had an effect on the behavior of C. reinhardtii. As well the presence of air
bubbles formed from the placement of the coverslip to some of the microscope slides
may have affected the speed of the C. reinhardtii. We noticed that when a large air
bubble was present, our organism had less space to move in because they tended to avoid
moving close to the air bubble. This may have been because they preferred the medium
that they were already in.
While the program CellTrack is more accurate than trying to measure the speed of
C. reinhardtii manually, there are still some limitations associated with using it to
analyze the video data that was recorded (Sacan et al. 2008). Oftentimes, the program
would fail to identify some C. reinhardtii cells so the cells had to be identified manually.
This can be attributed to the cells being quite small. Also, our results may be affected by
sampling bias because the C. reinhardtii cells that were moving very fast could not be
easily recorded for analysis as they moved out of the area being recorded. Therefore,
many of the cells that were recorded may represent C. reinhardtii cells that are slower.
Although we found a significant statistical difference for all three of our
hypotheses, there is some uncertainty associated with biological variations between
individual C. reinhardtii cells. For example, some cells may have experienced different
levels of energy during the time that they were being observed. Aside from the
differences caused by mutation, this may have been caused by factors such as fatigue, age,
sex, genetic differences or size. Since the mutant type cells had a more irregular and
asymmetrical movement pattern, they tended to circle around a smaller area compared to
the wild types (Brokaw et al. 1982). In contrast the wild type were noticeably quicker and
had a more symmetrical movement pattern (Brokaw et al. 1982).
Additionally, there were some environmental factors that could have also caused
uncertainty in our experiment. We were able to keep light intensity constant for each
treatment as outlined in the methods section. However, the higher light intensity
treatments had slightly higher temperatures mainly due to the warmth emitted from the
lamp that we used. Even though the difference in temperature was a mere one or two
degrees Celsius, this may still cause variation of speed in C. reinhardtii (Majima and
Oosawa 1975). Future experiments may want to improve on our own experiment by
maintaining a more constant temperature between treatments. This may be obtained by
using temperature controlled water baths.
While increased light intensity also increases average speed of C. reinhardtii there
are other abiotic environmental factors that can be tested. A similar study to perform in
the future is how the inorganic nitrogen levels affect the average speed of C. reinhardtii
cells. This would be a compatible study because inorganic nitrogen is a main nutrient
source for photosynthetic organisms (Fernandez and Galvan 2007).
We rejected all three sets of our null hypotheses. It was found that an increased
light intensity led to an increased cell speed for both wild-type and mutant C. reinhardtii.
Furthermore, a significant difference was found between the wild-type and mutant cell
speeds at all light intensities, which was proven by two-way ANOVA test.
We would like to thank Dr. Carol Pollock for her continuous input on our
experimental design and her guidance through our data analysis. We would also like to
extend our gratitude to the lab technician, Mindy Chow, for providing us with our stock
samples and all of the necessary equipment for our experiment. Additionally, we would
like to thank our peer tutor, Kathleen Cruz and our teaching assistant, Katelyn Tovey, for
their assistance throughout our experiment. Lastly, we thank the University of British
Columbia for allowing us to enroll in the lab and for supplying us with all the materials.
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