Investigation into L3 CCD Performance, (word)

Investigation into L3 CCD Performance
University of Durham Sep 2002-June 2003
Simon Tulloch
Aug 03
Aug 03
Introduction to L3 technology
An L3 chip, the CCD60, is shown schematically below. In a conventional CCD the
serial register contains approximately the same number of pixels as there are columns
in the image. L3 chips have an unusually serial register design. This register is
extended by 520 pixels into what is referred to as the Multiplication Register. Photoelectrons generated in the imaging part of the chip are amplified as they pass along
this register, by a process of avalanche multiplication. The degree of amplification
can be adjusted externally from unity up to several tens of thousand. A single
photoelectron entering the multiplication register exits as a substantial packet of
charge that produces a signal in the output amplifier far in excess of its read noise.
Single photon detection is therefore possible.
Two scientific grade (i.e. thinned, backside illuminated) L3 chips are currently
available from the manufacturers, E2V technologies. The smallest, shown above, is
the CCD60. The second is the CCD87, also a frame transfer device with a 512 x 512
pixel imaging area. The QE of these devices matches that of conventional E2V
thinned CCDs. The L3 technology could be applied to any desired image format for
those willing to pay for a custom manufacturing run.
The multiplication process offers a large potential gain in SNR at low signal levels.
Unfortunately the process introduces an unavoidable extra noise source, known as
Multiplication Noise that actually degrades the SNR at high signal levels. There is
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thus a crossover point , only below which L3 chips offer a real advantage. The graph
below shows this. The crossover point comes at the 20-30e signal level for normal
slow scan levels of noise (3 to 5e)
The precise effect of the multiplication noise is to degrade the SNR in the high signal
regime by a factor of 21/2.This is tantamount to a halving of quantum efficiency. An L3
chip can therefore be modelled very closely (for the purposes of limiting magnitude
calculations for example) as a zero-noise CCD with a QE one half of a conventional
scientific device.
Investigation program at Durham.
A CCD60 scientific grade CCD was purchased in 2002 for the study. The principal
aim was to assess the chip’s likely performance in NAOMI, but the photon counting
performance was also investigated. The study aims were:
1) Investigate maximum frame rate possible with an SDSU controller
2) Measure SNR improvements at low signal levels
3) Measure the gain stability of the CCD60
4) Confirm the presence of multiplication noise
5) Investigate other noise sources in the chip.
Aug 03
Test Camera Design.
The CCD60 was incorporated into a standard ING 2.5l Oxford Instruments dewar.
The equilibrium temperature once filled with LN2 was –100oC and the hold time
>20hrs. The camera was connected to an SDSU II controller which supplied all the
clock and bias signals to the CCD with the exception of H2V : the hi voltage clock
that induces the avalanche gain mechanism. This clock, although timed from the
SDSU clock board, was actually generated by an extra card bought in from E2V. In
their literature this is described as an L3MHV module. Another connection was made
between one of the DAC channels on the SDSU video board and the gain control pin
of the E2V module so that the multiplication gain could be adjusted in software.
The E2V module was not specifically designed for the CCD60. Although it worked
well, it had very unpleasant start up transients that had to be limited through the
addition of a zener clamp on the output. It was physically small enough to mount on a
Eurocard that was inserted into a spare slot inside the SDSU. The backplane
connector of this card was used to supply power, all signal connections were made
from a separate connector at the front.
Test Camera part assembled.
Aug 03
Test Camera after wiring
Demonstration of L3 Gain and Sub-Electron Noise
The first measurement to be done was of the multiplication effect itself. A stable light
source was observed for short exposures with a variety of gain settings and at
different temperatures.
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The illumination of the chip was varied by making changes to the exposure time. The
CCD was of frame transfer architecture (i.e. it has integral electronic shuttering) so
the exposure time could be accurately varied down to a few ms duration. It was
therefore possible to calculate the gain by measuring the change in exposure time
required to maintain the signal level constant. The gain DAC of the SDSU video
board had a range of 0 to +5V. When set to 0V, the multiplication gain of the CCD60
was 1, DAC voltages above 4V were not used as the chip maximums were
approached and in any case a protection zener on the output would start to clamp.
As can be seen from the graph the multiplication gain was strongly temperature
dependant, increasing at lower temperatures.
The intrinsic amplifier noise was 50e (a consequence of very rapid video waveform
sampling and the use of unshielded cables in the camera design). At multiplication
gains above 50 then, the effective readnoise of the amplifier was sub-electron. With
higher gains, and zero illumination, the noise in the bias frames (as measured in
ADU) eventually started to increase and the effective readnoise bottomed out at about
0.1e RMS. This noise had a strange speckled character. It was later realised that the
speckles corresponded to individual electron events. Unfortunately these were not
photo-electrons but were instead produced inside the CCD itself through a process
known as Spurious Charge Generation. This was explored in some depth later in the
study (see the section on Photon Counting).
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Measurements of the Multiplication Noise
Monte Carlo simulations of the multiplication process were done using GnuC and the
Gnu Scientific Library 9see Appendix) that confirmed what the manufacturers earlier
stated about the 21/2 degradation in SNR at high signal levels. This was later backed up
by actual measurements.
These measurements were done by uniformly illuminating the CCD with a stable light
source whose intensity in photoelectrons per pixel per second was known. The
exposure time was gradually increased and the relationship between mean signal level
and the RMS variation in the signal level was plotted. In the case of a noise free
system this would result in a straight line graph (indicated below by the bold black
line) with a gradient of one i.e. Poissonian statistics. The measurements were
repeated at 3 different gain settings between 11.8 and 283 to see if there was any
As can be seen , the data at all gain settings fits very well to a line of gradient 21/2, the
excess noise factor.
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Monte Carlo Simulations of Multiplication Noise
The simulation model assumed that the gain of each multiplication stage was equal,
and that the probability of an electron being multiplied was independent of the
number of other electrons in the pixel. The model was very valuable as it showed up
some non-intuitive results and showed that multiplication noise is an unavoidable
feature of L3 CCDs. In the Monte Carlo model, a single electron was simulated
entering a 520 stage L3 gain register with a total gain of 1060. The number of output
electrons was recorded and the simulation run again, a total of 2 million times. A
histogram of output values is shown below:
Monte Carlo Simulation. L3 Gain=1060, Input=1e, Binwidth=10e
Rather than showing a peak at 1000e, the curve shows a peak in the first histogram
bin. So a single electron entering the gain register can give rise to a wide range of
output signals.
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As the number of electrons in a pixel increases the output of the model starts to look
more intuitive. The Sigma of the distribution is 1.4 times higher, with the
multiplication noise included in the model, as expected.
Monte Carlo Model. 10e mean input, L3 gain 100
Monte Carlo Model. 30e mean input, L3 gain 100
Aug 03
Application to Wavefront Sensing
Some preliminary simulations done by Richard Wilson indicated that a zero noise
detector with multiplication noise could offer quite an advantage to the Naomi SH
WFS. Richard’s result is shown below.
Another simulation is being done for the end of August to include more accurate
predictions of the CCD60s electro-optical performance. Its suitability as a NGS tip tilt
sensor will also be simulated.
Tests were done to verify that the required frame rates could be achieved. These are
described in the following section.
Readout Speed through an SDSU II controller
The maximum read out speed of the CCD is quoted as 16Mpix per second i.e. 1000
frames per second when using an E2V controller. This was not available for the study
so all the measurements presented here were obtained with an SDSU II controller.
If applied to the NAOMI, the CCD will need to be windowed in quite a complex
fashion. The NAOMI Shack Hartman (SH) spot pattern consists of an 8 x 8 matrix of
spots with 8 pixels separating the spots in both the vertical and horizontal directions.
The centroiding is calculated from a 4 x 4 pixel window around the nominal position
of each spot . There are thus 4 dead (or ‘guard’) pixels between each spot that must
be skipped over by the windowing algorithm. The total number of pixels that need to
be digitised in a NAOMI WFS frame is therefore 32 x 32 = 1024. In order to check
that the windowing algorithm was indeed functioning correctly, a SH test target was
made using pinholes in an aluminium foil target illuminated from behind by an
extended diffuse source.
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Various windows were set up and their timings are shown below:
A) Full CCD60 128 x 128 pixel frame
Frame rate 28Hz
B) Windowed down to 100 sub-windows of 4 x 4 pixels
The dead space between windows was skipped over.
Frame rate 211Hz
C) Windowed down to 64 sub-windows of 4 x 4 pixels
This is the format required by NAOMI.
Frame Rate 320Hz
The peak pixel rate was about 400Kpix/second, well below the 2.5Mpix/s controller
limit. The bottleneck comes in the speed of operation of the SDSU clock card which
allows a minimum of 40ns between consecutive clock transitions. Nevertheless
320Hz is quite acceptable for almost all NAOMI regimes.
More recently, the CCD60 has been proposed as an NGS tip tilt sensor for the
Rayleigh laser system. This would require imaging of a single small window only.
Here, frame rates of >500Hz should be achievable, although no specific tests have yet
been done.
Positioning of the image on the CCD is critical to the readout speed. The image
should be as close as possible to the side (left or right) of the chip containing the
readout amplifier. The vertical position of the image is not important.
Aug 03
Image Quality
The SH spots all showed horizontal streaking, indicative of poor Horizontal CTE.
Various changes to the timing and levels of the clocks were made but it was not
possible to improve the CTE, which remained at 0.9998. The streaking was equally
bad at the left and right hand sides of the image which indicates the poor CTE
originates in the multiplication register rather than the serial register itself. This level
of CTE corresponds to a deferred charge of about 8% (compared to less than 0.5% for
a conventional scientific device). The manufacturers have confirmed that this is a
known problem. A CCD60 image below shows the soft right hand edge of a flat field
where the image area charge is trailed into the bias area. The exposure level was a few
thousand electrons per pixel.
CCD60 Flat Field
Aug 03
Using L3 CCDs for Photon Counting
If the multiplication gain is increased above several hundred, and the illumination
kept sufficiently low, the L3 images take on an unusual appearance. A cut through
such an image is shown below:
Cross section of L3 image taken with high gain
Overlying the Gaussian amplifier noise is a forest of ‘spikes’, which are all positive
going. These spikes are in fact individual electrons entering the multiplication
register. These spikes stand out clearly from the noise and could in principle be
thresholded , either using a hardware comparator or by post processing of saved
images, to give photon counting performance. Using photon counting mode removes
the effects of SNR degradation due to multiplication noise and gets us one step closer
to the ideal detector. In practice, there are a number of problems that arise. The most
serious of these is ‘Spurious Charge’.
Spurious charge in L3 CCDs
Even when the illumination was reduced to zero , the electron ‘spikes’ did not entirely
disappear from the image, although a considerable reduction could be produced
simply by letting the CCD settle for about 10 minutes after it was first powered up.
These spurious electrons are created within the CCD by the high electric fields in the
region of the transfer clock electrodes. Specifically, they are created when the CCD
goes from the inverted to non-inverted states ( as the clocks pass above approximately
the substrate voltage). This effect is present in normal CCDs but is generally masked
by the read noise except when high binning factors are used. In photon counting
applications its effect is more serious.
A reduction in spurious charge can be achieved by reducing the clock swings or by
using ‘tri-level clocking’. In this mode, the clocks pause in their positive going
transitions at an intermediate level close to the substrate voltage. The manufacturers
also suggested running the CCD (an AIMO or ‘Advanced Inverted Mode Operation’
device) in its non-inverted state, where the default state of the vertical clocks was high
rather than low. This would produce at least a 2 order magnitude increase in dark
Aug 03
current , but at cryogenic temperatures and short exposure times , this would not be
Tri-level clocking was not tried; with the SDSU controller there would be a large
speed penalty. Reducing the clock swings did not help as the charge transfer
efficiency suffered very badly with only a small reduction in swing. Running noninverted, however, gave a considerable improvement.
In order to investigate the spurious charge further, the CCD was read out with large
overscan areas. It would then be easier to work out where in the chip the noise was
actually being generated. The image format is shown below. The actual light
sensitive 128 x 128 pixel region of the chip is delineated by the large red square. It is
being weakly illuminated in this image and a large number of photon events are
visible. The other two delineated regions occupy the serial overscan (to the right) and
the parallel overscan (at the top). These regions are not light sensitive and the events
that they show are spurious charge only.
The pixels in the serial overscan have only ever transferred through the serial register
so any spurious charge they contain must have originated there. On the other hand,
pixels in the image area and the parallel overscan have been transferred through both
parallel and serial registers and contain spurious charge generated in both places.
The density of events in the serial overscan and parallel overscan regions is identical
indicating that there is now no spurious charge generation from the vertical clocks.
Aug 03
Once run in non-inverted mode the CCD60 only generates significant spurious
charge in the serial/multiplication registers.
A large number of the frames like the one shown above were analysed statistically
and a histogram of the pixel values in the image area and the serial overscan
compared. This histogram is shown on the next page overlaid with the output of the
Monte Carlo model. The first thing to notice is that the model agrees very closely
with the actual distribution of photon event pixel values at least towards the right side
of the graph.
The second thing to notice is that the spurious charge events in the serial overscan
have a different distribution to the photon/spurious charge from the image area. There
are clearly less of them, as this region is un-illuminated and contains no genuine
photon events, but they also show a large excess of low signal events.
This low signal excess can be explained if the spurious charge in the serial overscan is
generated at all positions along the multiplication register. For example, if a spurious
electron is generated at the start of the L3 register then it will be amplified by the
maximum amount possible. However, it is more likely that it will be generated at
some intermediate point along the gain register where it will not subsequently be
transferred through all stages of amplification and will therefore give rise to a low
signal event.
This further complicates the question of where is the best level at which to threshold
the photon events. Rising the threshold slightly will reduce the false events from
spurious charge generated in the serial register quite sharply whilst only slightly
reducing the number of genuine photon detections. Each photon counting system will
have to be individually tuned , depending on its intrinsic amplifier noise and spurious
charge levels. The intensity of the source will also be a factor.
Aug 03
Histogram analysis of weakly illuminated images and comparison with
Monte Carlo model.
Aug 03
The curve below shows exactly how the detected fraction of single photon events
varies with the threshold level. The curve was derived from the Monte Carlo result
obtained earlier. Placing the threshold at the 0.1e level (as referenced to the input of
the L3 register) should catch 90% of the photo-electrons. Placing the threshold any
higher will reduce the effective QE of the chip unacceptably, as some of the photoelectron events will fall under the threshold.
How photon counting efficiency changes with threshold position.
At the lower end it is important that the threshold should not lie within the intrinsic
output referenced noise of the amplifier. The RMS noise of the CCD60 amplifier in
the test camera was 50e. To avoid intrinsic noise triggering false photon events we
need the threshold to be at least 5 times higher than this i.e. 250e output referenced.
To ensure we detect 90% of the photon events, this 250e level at the output needs to
correspond to 0.1e at the input of the L3 gain register. This places a constraint on the
minimum L3 gain permissible if we are to photon count efficiently , in this case 2500.
E2V do not recommend gains in excess of 1000 so a low intrinsic noise output
amplifier and good shielding practice continue to be important even in this regime.
The spurious charge in the CCD60 affected about 1 in 25 pixels. Its effect on the SNR
of scientific observations is the same as that of a weak background illumination. It
should be noted that spurious charge will worsen in its effect as the frame rate goes up
since its contribution is measured per readout rather than per second in the case of a
normal background noise source. For best SNR, the photon counting camera frame
rate will need to be tuned to the source intensity.
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Actual Photon Counting Performance
To test the photon counting performance it was necessary to add an ND4 filter to the
front of the test camera so as to cut down the peak illumination to about 0.1 photons
per pixel per frame. The test target used was the same SH spot pattern used for the
WFS windowing tests. A series of 300 images of this target were read out and stored.
The individual images showed no recognisable features, merely a scattering of
electron events. The images were then fed into a thresholding program
(threshold=0.4e input referenced, that should catch 70% of the photons) that detected
the photo-electrons and added them to an output image array which is shown below:
Photon counted image (300 frames, thresholded and summed)
The square image area can be seen bordered on three sides by the underscan and
overscan regions. A cut through a row of this image , plotted below at the same
horizontal scale, shows that these non-light sensitive regions contain about 8e of
signal : the spurious charge from the serial transfer clocks.
Cut through above image
Aug 03
To get good dynamic range from a photon counting camera it is important that they be
used at high speed. If the speed is too low or the source too bright then coincidence
losses give a reduction in sensitivity.
It should be added that photon counting mode cannot be used for wavefront sensing
where the required frame rates are just too high.
The CCD60 could be extremely useful for the NAOMI AO system, both as a SH
sensor and as a NGS tip-tilt sensor. It remains to be seen whether there are any
applications for photon counting operations. A Java application based around the
WHT uDAS Corba grab client (being used currently for rapid simplexing) could be
developed quite straightforwardly to add a photon counting capability to the WHT.
Photon Counting Movie made with a CCD60:
L3 CCD Publications:
ING L3 Project Page:
Aug 03
Appendix A
A program to calculate the multiplication noise using the Monte Carlo Method. A
charge packet is followed through the multiplication register and its size at the output
added to a histogram. The program finishes with the histogram loaded with the
outcome of 50,000 such trials. The input charge packet varies around a mean entered
as a parameter. The actual size of the input charge packet varies around this mean
with the Poissonian distribution, as it would in a real flat field image.
// Simon Tulloch
// Isaac Newton Group
// La Palma
// Aug 2003
Program to calculate the histogram of output values from
electrons entering the CCD60 gain register
Expects 2 parameters: 1st is the mean input electrons, 2nd is gain.
The mean is turned into a poissonian distribution so that each trial
mimics a seperate pixel
in a real flat field image of even illumination.
// gcc myhist2.c -static -I/usr/local/include/gsl -lgsl -o myhist2 -lm
// Gnu Scientific Library required for compilation.
// To get library, see
int main(int argc, char *argv[])
int start_electrons=atoi(argv[1]);
int overall_gain=atoi(argv[2]);
int stages=520;
int trials =50000;
float gain_per_stage=pow(10,(log10(overall_gain)/stages));
float thresh =(RAND_MAX*(gain_per_stage-1));
int stage_num=0;
int electron=0;
unsigned long total=0;
int seed=0;
int rn=0;
int x;
float randnum=0.0;
int count;
unsigned long inp_electrons=start_electrons;
double mu;
float y=0.0,check=0.0;
// setup histogram bins so that each bin is 1 electron wide
// (referenced to input)
gsl_histogram *h = gsl_histogram_alloc(2*start_electrons);
Aug 03
// start Poissonian RNG
const gsl_rng_type * T;
gsl_rng * r;
printf("\nMonte Carlo Simulation of An L3 Electron Multiplication
for(count=1;count<=trials;count++) {
// Mean into a Poiss. Dist.
// Now follow the input electron charge packet through each
// stage of the L3 register
for(stage_num=1;stage_num<=stages;stage_num++) {
// Follow each electron in the packet from one gain
// stage to the next.
for(electron=1;electron<=inp_electrons;electron++) {
if (rn<thresh) total++;
printf("Input electrons have a POISSONIAN distribution\n");
printf("Input Electrons(mean)=%d\n",start_electrons);
printf("L3 gain=%d\n",overall_gain);
printf("Sigma of Output signal=%g e-\n",gsl_histogram_sigma(h));
printf("Output e- from L3 register (as a fraction of the
total)\nwould be :\n\n");
printf("Bin Value (e-) Bin content\n");
for (x=0;x<2*start_electrons;x++) {
// Read out bin values and recalculate bin boundaries
// referenced to output of L3 register
Aug 03
Appendix B
The following setup voltages were used with the CCD60:
Parallel Clocks
Serial Clocks
Dump Gate
Appendix C
Test Camera to SDSU wiring schedule:
Aug 03
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