- No category
advertisement
Create or Open a Project
The Project menu includes commands to create, open, save, and name projects.
Figure 7 Project Menu Commands
Command
New
Open
Close
Save
Save As
Description
Creates a project. Starting a new project closes the current project.
If you have not yet saved changes to the current project, a reminder to save your changes appears.
Opens a project. Opening another project closes the current project.
If you have not yet saved changes to the current project, a reminder to save your changes appears.
Closes the current project. This command does not close the software application.
If you have not yet saved changes to the current project, a reminder to save your changes appears.
Saves changes made to an open project. If your project is new, you are prompted to name the project.
Save As...: Provides the option to save the current project with a different name.
Save As Reduced Project: Provides the option to save the current project with a different name, at a reduced size. You cannot recover variants that were filtered out when saving at a reduced size.
BaseSpace VariantStudio v2.2 Software User Guide
9
advertisement
advertisement
Table of contents
- 5 Revision History
- 7 Table of Contents
- 9 Chapter 1 Getting Started
- 10 Introduction
- 12 VCF Input Requirements
- 14 BaseSpace VariantStudio Software Interface
- 17 Create or Open a Project
- 18 Import Variant Call Files
- 20 Data in BaseSpace VariantStudio Tables
- 29 VCF Fields Reported in the Variants Table
- 30 Somatic VCF Fields Reported in the Variants Table
- 33 Chapter 2 Applying Annotations and Classifications
- 34 Annotate Variants
- 37 Create Custom Annotations
- 39 Apply Variant Classifications
- 41 Edit Variant Classifications
- 43 Manage Classifications
- 45 Import Classifications
- 47 Chapter 3 Applying Filters
- 48 Apply Filters
- 57 Family-Based Filtering Workflows
- 63 Create Favorite Filters
- 65 Chapter 4 Generating Reports
- 66 Introduction
- 67 Sample Report Overview
- 68 Create a Sample Report Template
- 70 Create a Sample Report
- 71 Export Text Files and Charts
- 73 Appendix A Annotation Sources
- 74 Annotation Sources
- 77 Index
- 79 Technical Assistance